Wall clock time and date at job start Tue Mar 31 2020 12:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47235 * 2 1 4 4 C 1.50708 * 109.47027 * 120.00201 * 2 1 3 5 5 C 1.38544 * 119.79994 * 299.97773 * 4 2 1 6 6 C 1.37793 * 120.30011 * 179.69761 * 5 4 2 7 7 C 1.39708 * 119.90223 * 0.59994 * 6 5 4 8 8 C 1.47535 * 120.18921 * 179.69765 * 7 6 5 9 9 O 1.21594 * 120.00212 * 233.56488 * 8 7 6 10 10 N 1.34776 * 119.99926 * 53.56971 * 8 7 6 11 11 C 1.46931 * 120.62884 * 176.14474 * 10 8 7 12 12 C 1.53192 * 108.77242 * 233.60509 * 11 10 8 13 13 C 1.53042 * 109.31665 * 305.36552 * 12 11 10 14 14 C 1.53039 * 109.53378 * 61.36541 * 13 12 11 15 15 H 1.09002 * 109.49722 * 58.61922 * 14 13 12 16 16 C 1.50706 * 109.49313 * 178.68524 * 14 13 12 17 17 H 1.07998 * 120.00296 * 5.74715 * 16 14 13 18 18 C 1.37881 * 119.99639 * 185.47884 * 16 14 13 19 19 N 1.31512 * 119.99884 * 356.43754 * 18 16 14 20 20 Si 1.86795 * 119.99781 * 176.43390 * 18 16 14 21 21 H 1.48498 * 109.47134 * 94.99306 * 20 18 16 22 22 H 1.48504 * 109.47012 * 214.99559 * 20 18 16 23 23 H 1.48500 * 109.47369 * 334.99086 * 20 18 16 24 24 C 1.46931 * 120.60656 * 356.16418 * 10 8 7 25 25 C 1.40136 * 119.61938 * 359.42592 * 7 6 5 26 26 O 1.35654 * 120.15228 * 180.29791 * 25 7 6 27 27 C 1.38051 * 119.80592 * 119.99954 * 4 2 1 28 28 H 1.08998 * 109.47135 * 300.00216 * 1 2 3 29 29 H 1.09002 * 109.47022 * 60.00291 * 1 2 3 30 30 H 1.09004 * 109.47127 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47135 * 239.99784 * 2 1 3 32 32 H 1.08994 * 109.47031 * 299.99525 * 3 2 1 33 33 H 1.09004 * 109.46836 * 59.99839 * 3 2 1 34 34 H 1.08999 * 109.47002 * 179.97438 * 3 2 1 35 35 H 1.08001 * 119.85369 * 359.97438 * 5 4 2 36 36 H 1.07997 * 120.04973 * 180.32589 * 6 5 4 37 37 H 1.08999 * 109.58557 * 113.82236 * 11 10 8 38 38 H 1.08995 * 109.58795 * 353.39341 * 11 10 8 39 39 H 1.09007 * 109.49470 * 185.41207 * 12 11 10 40 40 H 1.08997 * 109.52391 * 65.33674 * 12 11 10 41 41 H 1.09000 * 109.45979 * 301.34871 * 13 12 11 42 42 H 1.08996 * 109.45901 * 181.38271 * 13 12 11 43 43 H 0.97002 * 119.99858 * 180.02562 * 19 18 16 44 44 H 1.09000 * 109.61455 * 6.62113 * 24 10 8 45 45 H 1.08996 * 109.56318 * 246.19716 * 24 10 8 46 46 H 0.96696 * 114.00438 * 89.99870 * 26 25 7 47 47 H 1.08001 * 119.95893 * 0.02562 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.6955 -0.2333 2.4868 6 6 2.1439 -0.8785 3.6188 7 6 2.9524 -2.0118 3.5004 8 6 3.4416 -2.7036 4.7082 9 8 4.6310 -2.9131 4.8491 10 7 2.5700 -3.1034 5.6553 11 6 3.0314 -3.8672 6.8226 12 6 2.2035 -5.1517 6.9298 13 6 0.7158 -4.7940 6.9607 14 6 0.3340 -4.0803 5.6619 15 1 0.5544 -4.7274 4.8128 16 6 -1.1379 -3.7573 5.6794 17 1 -1.7222 -3.9486 6.5673 18 6 -1.7374 -3.2123 4.5638 19 7 -1.0121 -2.9093 3.5094 20 14 -3.5797 -2.9043 4.5500 21 1 -3.8496 -1.4986 4.9455 22 1 -4.1117 -3.1453 3.1846 23 1 -4.2426 -3.8243 5.5089 24 6 1.1406 -2.7837 5.5395 25 6 3.2912 -2.4909 2.2278 26 8 4.0706 -3.5939 2.1003 27 6 2.8257 -1.8326 1.0992 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6768 1.9563 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.0749 0.6457 2.5794 36 1 1.8745 -0.5061 4.5961 37 1 2.8989 -3.2707 7.7252 38 1 4.0845 -4.1203 6.7007 39 1 2.4696 -5.6807 7.8450 40 1 2.4067 -5.7889 6.0692 41 1 0.5177 -4.1372 7.8077 42 1 0.1254 -5.7047 7.0617 43 1 -1.4338 -2.5255 2.7247 44 1 0.9461 -2.3224 4.5712 45 1 0.8540 -2.0984 6.3371 46 1 3.5751 -4.4235 2.0632 47 1 3.0847 -2.1980 0.1164 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597902680.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:53:23 Heat of formation + Delta-G solvation = -87.607529 kcal Electronic energy + Delta-G solvation = -28104.804947 eV Core-core repulsion = 24444.086279 eV Total energy + Delta-G solvation = -3660.718668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.68150 -40.15534 -38.50130 -38.06264 -35.81081 -35.02212 -33.63669 -31.89463 -31.18963 -30.34422 -27.91826 -26.97839 -26.51011 -24.71790 -23.79722 -23.24770 -21.80704 -21.16091 -20.22087 -18.62672 -18.51137 -17.98493 -17.43486 -16.93583 -16.52369 -16.47821 -15.74719 -15.67413 -15.24126 -15.16112 -14.76010 -14.67496 -14.53864 -14.34236 -14.24864 -13.75061 -13.62224 -13.53591 -13.16714 -12.90930 -12.86591 -12.82487 -12.54528 -12.32506 -12.22776 -12.20859 -11.95633 -11.82857 -11.66132 -11.61531 -11.48276 -11.12770 -10.88336 -10.65765 -10.48935 -9.69360 -9.57099 -9.37860 -8.04776 -6.16207 0.03578 0.36860 1.44097 1.48547 1.55869 1.65035 2.16185 2.47902 2.67535 3.23213 3.23323 3.57062 3.81603 3.83264 4.09013 4.12709 4.15481 4.29134 4.31350 4.36799 4.46582 4.52574 4.55909 4.69399 4.79420 4.82146 4.85077 4.87393 4.93531 5.01228 5.05067 5.05488 5.16217 5.19223 5.23275 5.26663 5.29649 5.34812 5.42702 5.46476 5.61569 5.65671 5.67285 5.86227 5.87598 6.00554 6.32928 6.54087 6.70764 6.90730 7.17499 7.50988 9.00000 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.009501 B = 0.006668 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.268264 B = 4198.034588 C = 6514.001202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.053 4.053 3 C -0.141 4.141 4 C -0.037 4.037 5 C -0.121 4.121 6 C -0.061 4.061 7 C -0.172 4.172 8 C 0.557 3.443 9 O -0.582 6.582 10 N -0.600 5.600 11 C 0.108 3.892 12 C -0.122 4.122 13 C -0.107 4.107 14 C 0.041 3.959 15 H -0.005 1.005 16 C -0.537 4.537 17 H 0.053 0.947 18 C 0.030 3.970 19 N -0.893 5.893 20 Si 0.942 3.058 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.276 1.276 24 C 0.106 3.894 25 C 0.138 3.862 26 O -0.502 6.502 27 C -0.153 4.153 28 H 0.053 0.947 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.077 0.923 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.143 0.857 36 H 0.123 0.877 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.047 0.953 41 H 0.056 0.944 42 H 0.052 0.948 43 H 0.263 0.737 44 H 0.115 0.885 45 H 0.043 0.957 46 H 0.401 0.599 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.974 5.543 -5.070 8.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.071 4.071 3 C -0.198 4.198 4 C -0.037 4.037 5 C -0.139 4.139 6 C -0.080 4.080 7 C -0.175 4.175 8 C 0.346 3.654 9 O -0.464 6.464 10 N -0.331 5.331 11 C -0.014 4.014 12 C -0.160 4.160 13 C -0.144 4.144 14 C 0.021 3.979 15 H 0.013 0.987 16 C -0.576 4.576 17 H 0.071 0.929 18 C -0.172 4.172 19 N -0.530 5.530 20 Si 0.769 3.231 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.016 4.016 25 C 0.092 3.908 26 O -0.314 6.314 27 C -0.171 4.171 28 H 0.072 0.928 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.161 0.839 36 H 0.141 0.859 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.133 0.867 45 H 0.061 0.939 46 H 0.258 0.742 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.019 5.890 -5.138 8.789 hybrid contribution -1.440 -0.584 0.202 1.567 sum 2.578 5.306 -4.936 7.692 Atomic orbital electron populations 1.21832 0.93803 1.01702 1.02560 1.20220 0.96219 0.96721 0.93986 1.21846 1.01060 0.93984 1.02898 1.20121 0.94166 0.93696 0.95723 1.20992 1.00626 1.01043 0.91248 1.21089 0.93534 0.93490 0.99875 1.20185 1.03575 1.00548 0.93203 1.18516 0.85266 0.78428 0.83156 1.90676 1.17087 1.59054 1.79606 1.48502 1.09531 1.53128 1.21914 1.21695 0.99027 0.93009 0.87641 1.21868 0.95520 0.96259 1.02347 1.21552 0.94525 0.99822 0.98549 1.18882 0.93885 0.92188 0.92905 0.98721 1.21325 0.94201 1.42740 0.99309 0.92906 1.25556 1.01089 0.95099 0.95450 1.69965 1.36099 1.42344 1.04621 0.85794 0.81879 0.78344 0.77088 1.20226 1.21196 1.20096 1.22435 0.75701 0.99757 1.03658 1.18503 0.91553 0.89783 0.90962 1.84694 1.35049 1.16092 1.95524 1.21361 0.99920 0.97742 0.98085 0.92813 0.90414 0.93865 0.89230 0.90455 0.92386 0.92713 0.83937 0.85874 0.90400 0.90288 0.88531 0.93449 0.92514 0.92927 0.92783 0.86698 0.93876 0.74151 0.83343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.09 9.00 71.98 0.65 -2.44 16 2 C -0.05 -1.14 3.09 -11.54 -0.04 -1.17 16 3 C -0.14 -2.48 9.00 71.98 0.65 -1.83 16 4 C -0.04 -1.05 4.79 -19.83 -0.09 -1.15 16 5 C -0.12 -3.78 8.68 22.24 0.19 -3.59 16 6 C -0.06 -2.24 7.41 22.52 0.17 -2.08 16 7 C -0.17 -6.96 4.91 -20.01 -0.10 -7.06 16 8 C 0.56 24.42 6.86 86.70 0.59 25.01 16 9 O -0.58 -28.14 16.17 -0.62 -0.01 -28.15 16 10 N -0.60 -24.77 2.97 -822.65 -2.45 -27.22 16 11 C 0.11 3.83 6.42 86.36 0.55 4.38 16 12 C -0.12 -4.05 6.08 30.67 0.19 -3.86 16 13 C -0.11 -4.11 5.11 30.62 0.16 -3.96 16 14 C 0.04 1.90 2.18 -11.46 -0.02 1.87 16 15 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 16 C -0.54 -27.12 8.49 25.60 0.22 -26.91 16 17 H 0.05 2.66 7.75 -2.91 -0.02 2.63 16 18 C 0.03 1.48 5.36 84.66 0.45 1.93 16 19 N -0.89 -45.29 11.67 21.45 0.25 -45.04 16 20 Si 0.94 40.23 29.54 68.60 2.03 42.25 16 21 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 22 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 24 C 0.11 4.66 4.54 86.36 0.39 5.05 16 25 C 0.14 5.16 6.70 22.84 0.15 5.31 16 26 O -0.50 -18.30 12.69 -86.30 -1.10 -19.39 16 27 C -0.15 -4.78 9.59 22.34 0.21 -4.57 16 28 H 0.05 1.23 7.37 -2.39 -0.02 1.21 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.09 1.70 7.86 -2.39 -0.02 1.68 16 32 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.06 1.03 7.37 -2.38 -0.02 1.02 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.14 3.78 7.07 -2.91 -0.02 3.76 16 36 H 0.12 4.43 7.33 -2.91 -0.02 4.41 16 37 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.08 2.84 7.02 -2.39 -0.02 2.82 16 39 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 42 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.26 12.81 8.31 -92.71 -0.77 12.04 16 44 H 0.12 5.30 3.12 -2.39 -0.01 5.30 16 45 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.40 11.81 9.06 -74.06 -0.67 11.14 16 47 H 0.15 3.85 7.93 -2.91 -0.02 3.83 16 Total: -1.00 -62.82 372.34 3.35 -59.47 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.30 Total: 33.13 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: 4.33 Total: -15.05 kcal Atomic # 7 Polarization: -70.07 SS G_CDS: -2.20 Total: -72.26 kcal Atomic # 8 Polarization: -46.44 SS G_CDS: -1.11 Total: -47.55 kcal Atomic # 14 Polarization: 40.23 SS G_CDS: 2.03 Total: 42.25 kcal Total: -62.82 3.35 -59.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597902680.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.134 kcal (2) G-P(sol) polarization free energy of solvation -62.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds