Wall clock time and date at job start Tue Mar 31 2020 12:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47242 * 2 1 4 4 C 1.52996 * 109.47462 * 239.99798 * 2 1 3 5 5 C 1.50698 * 109.47108 * 59.99880 * 4 2 1 6 6 C 1.38237 * 120.00325 * 269.73256 * 5 4 2 7 7 C 1.38236 * 120.00066 * 179.78746 * 6 5 4 8 8 C 1.38229 * 119.99819 * 0.43785 * 7 6 5 9 9 C 1.38236 * 120.00594 * 359.81276 * 8 7 6 10 10 C 1.38236 * 119.99473 * 359.97438 * 9 8 7 11 11 C 1.50708 * 109.47046 * 119.99612 * 2 1 3 12 12 O 1.21283 * 119.99664 * 107.21623 * 11 2 1 13 13 N 1.34769 * 119.99986 * 287.22201 * 11 2 1 14 14 C 1.46935 * 120.60370 * 176.33588 * 13 11 2 15 15 C 1.53194 * 108.77164 * 233.52973 * 14 13 11 16 16 C 1.53033 * 109.33853 * 305.41221 * 15 14 13 17 17 C 1.53047 * 109.54052 * 61.34872 * 16 15 14 18 18 H 1.08997 * 109.49521 * 58.61307 * 17 16 15 19 19 C 1.50691 * 109.50167 * 178.68284 * 17 16 15 20 20 H 1.08000 * 120.00312 * 119.99462 * 19 17 16 21 21 C 1.37878 * 120.00105 * 300.00621 * 19 17 16 22 22 N 1.31512 * 119.99895 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 120.00144 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47170 * 59.99310 * 23 21 19 25 25 H 1.48504 * 109.47144 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47061 * 299.99304 * 23 21 19 27 27 C 1.46924 * 120.63492 * 356.30449 * 13 11 2 28 28 H 1.08998 * 109.47283 * 299.99805 * 1 2 3 29 29 H 1.09001 * 109.47157 * 60.00507 * 1 2 3 30 30 H 1.09005 * 109.46894 * 180.02562 * 1 2 3 31 31 H 0.96697 * 114.00456 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47505 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.47212 * 299.99984 * 4 2 1 34 34 H 1.07998 * 119.99659 * 359.97438 * 6 5 4 35 35 H 1.08001 * 119.99710 * 180.26919 * 7 6 5 36 36 H 1.08004 * 119.99933 * 179.83543 * 8 7 6 37 37 H 1.07995 * 120.00424 * 179.97438 * 9 8 7 38 38 H 1.08003 * 119.99990 * 180.02562 * 10 9 8 39 39 H 1.08999 * 109.56646 * 113.75507 * 14 13 11 40 40 H 1.09003 * 109.61352 * 353.32714 * 14 13 11 41 41 H 1.09003 * 109.49821 * 185.44161 * 15 14 13 42 42 H 1.09006 * 109.49560 * 65.37877 * 15 14 13 43 43 H 1.09001 * 109.46211 * 181.36896 * 16 15 14 44 44 H 1.09002 * 109.46203 * 301.32785 * 16 15 14 45 45 H 0.97003 * 120.00048 * 180.02562 * 22 21 19 46 46 H 1.09004 * 109.58126 * 6.65261 * 27 13 11 47 47 H 1.08994 * 109.70952 * 246.29688 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 6 0.3326 -0.3800 -3.0473 7 6 -0.1303 0.2745 -4.1735 8 6 0.6164 1.2921 -4.7372 9 6 1.8241 1.6578 -4.1727 10 6 2.2848 1.0062 -3.0440 11 6 2.0323 -0.7104 1.2306 12 8 2.5275 -1.8133 1.1343 13 7 1.9311 -0.1201 2.4379 14 6 2.3427 -0.8321 3.6555 15 6 1.1825 -0.8095 4.6557 16 6 0.7443 0.6378 4.8909 17 6 0.2581 1.2460 3.5733 18 1 -0.5699 0.6541 3.1832 19 6 -0.2034 2.6605 3.8122 20 1 0.2729 3.4789 3.2929 21 6 -1.2335 2.9099 4.6940 22 7 -1.8137 1.9133 5.3263 23 14 -1.8051 4.6634 4.9907 24 1 -2.2765 5.2534 3.7120 25 1 -2.9176 4.6617 5.9744 26 1 -0.6760 5.4690 5.5211 27 6 1.4081 1.2473 2.5612 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.9703 1.4236 0.0004 32 1 3.1300 -0.7217 -1.2489 33 1 1.6768 -1.7490 -1.2492 34 1 -0.2488 -1.1778 -2.6092 35 1 -1.0739 -0.0110 -4.6144 36 1 0.2561 1.8017 -5.6187 37 1 2.4076 2.4525 -4.6134 38 1 3.2281 1.2921 -2.6026 39 1 3.2108 -0.3379 4.0916 40 1 2.5926 -1.8641 3.4091 41 1 1.5067 -1.2493 5.5989 42 1 0.3460 -1.3824 4.2556 43 1 -0.0650 0.6582 5.6208 44 1 1.5879 1.2159 5.2682 45 1 -2.5387 2.0888 5.9464 46 1 1.0417 1.5871 1.5924 47 1 2.1984 1.9134 2.9070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597909422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:24 Heat of formation + Delta-G solvation = -66.969712 kcal Electronic energy + Delta-G solvation = -27792.253863 eV Core-core repulsion = 24132.430118 eV Total energy + Delta-G solvation = -3659.823745 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.51775 -39.14484 -37.13418 -36.59494 -33.41594 -33.01824 -31.67193 -30.95712 -30.34149 -29.82811 -26.83053 -25.25910 -24.86751 -22.89668 -22.49571 -21.65869 -20.82585 -19.83314 -18.66072 -17.55186 -16.61922 -16.26117 -15.89218 -15.55775 -15.27119 -15.03954 -14.85707 -14.56800 -13.94734 -13.67894 -13.43943 -13.22447 -13.00011 -12.87422 -12.75691 -12.63981 -12.23557 -12.07084 -11.89779 -11.87159 -11.80491 -11.43605 -11.06202 -10.97444 -10.96248 -10.90103 -10.76084 -10.49657 -10.21788 -9.94186 -9.76354 -9.56240 -8.98030 -8.90657 -8.80670 -8.58455 -8.39826 -7.91563 -6.03428 -4.11024 1.33517 1.39982 2.85396 3.29662 3.34629 3.36422 3.43663 3.81297 4.22770 4.39649 4.61579 4.79384 4.94626 4.97945 5.03195 5.08133 5.12149 5.26153 5.47770 5.49926 5.64557 5.72350 5.76359 5.82587 5.90944 5.93553 5.98240 6.04389 6.08729 6.10365 6.32975 6.37289 6.43221 6.44454 6.48941 6.54732 6.63425 6.70236 6.84505 6.96677 6.99386 7.16135 7.35435 7.55949 7.67780 7.88911 7.94315 8.08886 8.35146 8.53686 8.92684 9.54218 11.01760 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.004148 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.852062 B = 6749.391245 C = 8172.879525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.132 3.868 3 O -0.532 6.532 4 C -0.092 4.092 5 C -0.067 4.067 6 C -0.115 4.115 7 C -0.121 4.121 8 C -0.127 4.127 9 C -0.120 4.120 10 C -0.104 4.104 11 C 0.486 3.514 12 O -0.561 6.561 13 N -0.587 5.587 14 C 0.111 3.889 15 C -0.133 4.133 16 C -0.114 4.114 17 C 0.039 3.961 18 H 0.028 0.972 19 C -0.514 4.514 20 H 0.057 0.943 21 C 0.064 3.936 22 N -0.888 5.888 23 Si 0.891 3.109 24 H -0.277 1.277 25 H -0.288 1.288 26 H -0.277 1.277 27 C 0.094 3.906 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.373 0.627 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.095 0.905 44 H 0.034 0.966 45 H 0.261 0.739 46 H 0.109 0.891 47 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.610 -3.428 -14.356 16.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.089 3.911 3 O -0.338 6.338 4 C -0.130 4.130 5 C -0.067 4.067 6 C -0.133 4.133 7 C -0.139 4.139 8 C -0.145 4.145 9 C -0.139 4.139 10 C -0.122 4.122 11 C 0.272 3.728 12 O -0.442 6.442 13 N -0.317 5.317 14 C -0.012 4.012 15 C -0.171 4.171 16 C -0.152 4.152 17 C 0.020 3.980 18 H 0.046 0.954 19 C -0.553 4.553 20 H 0.075 0.925 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.719 3.281 24 H -0.202 1.202 25 H -0.214 1.214 26 H -0.203 1.203 27 C -0.027 4.027 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.221 0.779 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.139 0.861 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.053 0.947 45 H 0.071 0.929 46 H 0.126 0.874 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.080 -3.893 -14.243 15.969 hybrid contribution 0.191 0.895 0.427 1.010 sum 6.271 -2.998 -13.816 15.466 Atomic orbital electron populations 1.22005 0.90494 1.02975 1.05116 1.21235 0.96882 0.82363 0.90656 1.86687 1.26419 1.24336 1.96363 1.21053 1.01350 0.99758 0.90793 1.19685 0.94874 0.96399 0.95762 1.21088 0.95807 1.00280 0.96086 1.21105 0.99733 0.96663 0.96411 1.21100 0.95296 0.97902 1.00230 1.21101 0.96517 0.99787 0.96447 1.20979 0.99864 0.95635 0.95739 1.21291 0.79323 0.86472 0.85697 1.90634 1.46142 1.20940 1.86470 1.48355 1.60940 1.17130 1.05320 1.21621 0.97267 0.97151 0.85161 1.21987 0.97169 1.00810 0.97149 1.21648 1.00608 0.90743 1.02169 1.18989 0.91765 0.96527 0.90681 0.95391 1.21023 1.17265 0.92081 1.24891 0.92488 1.24929 0.96189 0.96889 0.95711 1.69865 1.24225 1.30539 1.28069 0.86672 0.78283 0.85096 0.78029 1.20220 1.21362 1.20284 1.22634 0.97540 0.78930 1.03566 0.89570 0.90489 0.91157 0.77941 0.90422 0.89163 0.86093 0.86277 0.86471 0.86351 0.86354 0.92310 0.90461 0.92604 0.92551 0.88719 0.94692 0.92925 0.87359 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 7.97 37.16 0.30 -1.95 16 2 C 0.13 1.92 0.64 -91.77 -0.06 1.86 16 3 O -0.53 -7.37 9.31 -35.23 -0.33 -7.70 16 4 C -0.09 -1.16 4.00 -27.89 -0.11 -1.27 16 5 C -0.07 -0.80 4.33 -104.62 -0.45 -1.25 16 6 C -0.11 -1.31 7.90 -39.58 -0.31 -1.62 16 7 C -0.12 -1.27 10.05 -39.59 -0.40 -1.67 16 8 C -0.13 -1.29 10.05 -39.59 -0.40 -1.69 16 9 C -0.12 -1.25 10.05 -39.58 -0.40 -1.65 16 10 C -0.10 -1.16 9.27 -39.58 -0.37 -1.52 16 11 C 0.49 8.44 6.67 -10.99 -0.07 8.36 16 12 O -0.56 -10.90 15.41 5.55 0.09 -10.81 16 13 N -0.59 -10.67 2.97 -172.76 -0.51 -11.19 16 14 C 0.11 1.96 6.42 -3.70 -0.02 1.94 16 15 C -0.13 -2.53 6.08 -26.61 -0.16 -2.69 16 16 C -0.11 -2.55 4.96 -26.69 -0.13 -2.69 16 17 C 0.04 0.92 2.18 -91.65 -0.20 0.72 16 18 H 0.03 0.73 7.81 -51.93 -0.41 0.32 16 19 C -0.51 -13.33 8.56 -34.44 -0.29 -13.63 16 20 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 21 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 22 N -0.89 -24.45 11.31 55.43 0.63 -23.82 16 23 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 24 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 25 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 C 0.09 1.84 4.30 -3.71 -0.02 1.82 16 28 H 0.09 1.53 5.95 -51.93 -0.31 1.22 16 29 H 0.08 1.10 6.19 -51.93 -0.32 0.77 16 30 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.37 3.98 9.04 45.56 0.41 4.39 16 32 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 33 H 0.09 1.18 7.90 -51.93 -0.41 0.77 16 34 H 0.12 1.26 8.04 -52.49 -0.42 0.83 16 35 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 36 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 1.36 7.03 -51.93 -0.36 1.00 16 41 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.11 2.08 3.63 -51.93 -0.19 1.89 16 47 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -29.39 365.44 -9.35 -38.74 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.51 Total: 8.96 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -3.20 Total: -15.31 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.11 Total: -35.01 kcal Atomic # 8 Polarization: -18.26 SS G_CDS: -0.24 Total: -18.51 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -29.39 -9.35 -38.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.229 kcal (2) G-P(sol) polarization free energy of solvation -29.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds