Wall clock time and date at job start Tue Mar 31 2020 12:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47242 * 2 1 4 4 C 1.52996 * 109.47462 * 239.99798 * 2 1 3 5 5 C 1.50698 * 109.47108 * 59.99880 * 4 2 1 6 6 C 1.38237 * 120.00325 * 269.73256 * 5 4 2 7 7 C 1.38236 * 120.00066 * 179.78746 * 6 5 4 8 8 C 1.38229 * 119.99819 * 0.43785 * 7 6 5 9 9 C 1.38236 * 120.00594 * 359.81276 * 8 7 6 10 10 C 1.38236 * 119.99473 * 359.97438 * 9 8 7 11 11 C 1.50708 * 109.47046 * 119.99612 * 2 1 3 12 12 O 1.21283 * 119.99664 * 107.21623 * 11 2 1 13 13 N 1.34769 * 119.99986 * 287.22201 * 11 2 1 14 14 C 1.46935 * 120.60370 * 176.33588 * 13 11 2 15 15 C 1.53194 * 108.77164 * 233.52973 * 14 13 11 16 16 C 1.53033 * 109.33853 * 305.41221 * 15 14 13 17 17 C 1.53047 * 109.54052 * 61.34872 * 16 15 14 18 18 H 1.08997 * 109.49521 * 58.61307 * 17 16 15 19 19 C 1.50691 * 109.50167 * 178.68284 * 17 16 15 20 20 H 1.08000 * 120.00312 * 119.99462 * 19 17 16 21 21 C 1.37878 * 120.00105 * 300.00621 * 19 17 16 22 22 N 1.31512 * 119.99895 * 359.97438 * 21 19 17 23 23 Si 1.86800 * 120.00144 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47170 * 59.99310 * 23 21 19 25 25 H 1.48504 * 109.47144 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.47061 * 299.99304 * 23 21 19 27 27 C 1.46924 * 120.63492 * 356.30449 * 13 11 2 28 28 H 1.08998 * 109.47283 * 299.99805 * 1 2 3 29 29 H 1.09001 * 109.47157 * 60.00507 * 1 2 3 30 30 H 1.09005 * 109.46894 * 180.02562 * 1 2 3 31 31 H 0.96697 * 114.00456 * 179.97438 * 3 2 1 32 32 H 1.08991 * 109.47505 * 180.02562 * 4 2 1 33 33 H 1.09005 * 109.47212 * 299.99984 * 4 2 1 34 34 H 1.07998 * 119.99659 * 359.97438 * 6 5 4 35 35 H 1.08001 * 119.99710 * 180.26919 * 7 6 5 36 36 H 1.08004 * 119.99933 * 179.83543 * 8 7 6 37 37 H 1.07995 * 120.00424 * 179.97438 * 9 8 7 38 38 H 1.08003 * 119.99990 * 180.02562 * 10 9 8 39 39 H 1.08999 * 109.56646 * 113.75507 * 14 13 11 40 40 H 1.09003 * 109.61352 * 353.32714 * 14 13 11 41 41 H 1.09003 * 109.49821 * 185.44161 * 15 14 13 42 42 H 1.09006 * 109.49560 * 65.37877 * 15 14 13 43 43 H 1.09001 * 109.46211 * 181.36896 * 16 15 14 44 44 H 1.09002 * 109.46203 * 301.32785 * 16 15 14 45 45 H 0.97003 * 120.00048 * 180.02562 * 22 21 19 46 46 H 1.09004 * 109.58126 * 6.65261 * 27 13 11 47 47 H 1.08994 * 109.70952 * 246.29688 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4796 6 6 0.3326 -0.3800 -3.0473 7 6 -0.1303 0.2745 -4.1735 8 6 0.6164 1.2921 -4.7372 9 6 1.8241 1.6578 -4.1727 10 6 2.2848 1.0062 -3.0440 11 6 2.0323 -0.7104 1.2306 12 8 2.5275 -1.8133 1.1343 13 7 1.9311 -0.1201 2.4379 14 6 2.3427 -0.8321 3.6555 15 6 1.1825 -0.8095 4.6557 16 6 0.7443 0.6378 4.8909 17 6 0.2581 1.2460 3.5733 18 1 -0.5699 0.6541 3.1832 19 6 -0.2034 2.6605 3.8122 20 1 0.2729 3.4789 3.2929 21 6 -1.2335 2.9099 4.6940 22 7 -1.8137 1.9133 5.3263 23 14 -1.8051 4.6634 4.9907 24 1 -2.2765 5.2534 3.7120 25 1 -2.9176 4.6617 5.9744 26 1 -0.6760 5.4690 5.5211 27 6 1.4081 1.2473 2.5612 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 2.9703 1.4236 0.0004 32 1 3.1300 -0.7217 -1.2489 33 1 1.6768 -1.7490 -1.2492 34 1 -0.2488 -1.1778 -2.6092 35 1 -1.0739 -0.0110 -4.6144 36 1 0.2561 1.8017 -5.6187 37 1 2.4076 2.4525 -4.6134 38 1 3.2281 1.2921 -2.6026 39 1 3.2108 -0.3379 4.0916 40 1 2.5926 -1.8641 3.4091 41 1 1.5067 -1.2493 5.5989 42 1 0.3460 -1.3824 4.2556 43 1 -0.0650 0.6582 5.6208 44 1 1.5879 1.2159 5.2682 45 1 -2.5387 2.0888 5.9464 46 1 1.0417 1.5871 1.5924 47 1 2.1984 1.9134 2.9070 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597909422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:23 Heat of formation + Delta-G solvation = -83.185670 kcal Electronic energy + Delta-G solvation = -27792.957040 eV Core-core repulsion = 24132.430118 eV Total energy + Delta-G solvation = -3660.526921 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.81323 -40.11684 -38.56596 -37.92690 -35.19649 -34.08809 -33.24443 -32.00242 -31.72915 -31.07944 -27.86814 -27.04161 -26.47928 -24.20478 -23.33764 -23.12550 -22.02171 -21.23873 -20.08608 -18.97976 -18.14779 -17.40429 -17.33204 -16.78453 -16.51369 -16.49077 -15.89126 -15.84314 -15.38040 -15.11192 -14.82025 -14.47795 -14.44248 -14.18810 -13.90934 -13.82122 -13.50817 -13.48381 -13.34548 -13.05237 -12.95029 -12.80916 -12.73431 -12.57916 -12.53744 -12.01875 -11.84058 -11.81819 -11.76201 -11.67383 -11.56557 -11.18672 -10.78905 -10.41944 -10.21898 -9.70700 -9.50676 -9.47903 -8.05523 -6.19825 0.51041 0.60163 1.44672 1.45846 1.46548 1.53335 2.07105 2.46822 2.95106 3.13949 3.21966 3.35651 3.82363 3.88280 4.01362 4.13127 4.16616 4.22548 4.24944 4.35243 4.37642 4.53464 4.58285 4.61463 4.71078 4.71757 4.77517 4.83503 4.87980 4.90907 4.94157 5.04575 5.15779 5.18673 5.21895 5.26222 5.30150 5.45040 5.64393 5.65432 5.66107 5.70941 5.79228 5.97151 6.12925 6.20983 6.36555 6.44955 6.65362 6.91357 7.11609 7.48527 8.97968 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013306 B = 0.004148 C = 0.003425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.852062 B = 6749.391245 C = 8172.879525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.143 3.857 3 O -0.538 6.538 4 C -0.081 4.081 5 C -0.081 4.081 6 C -0.129 4.129 7 C -0.130 4.130 8 C -0.132 4.132 9 C -0.128 4.128 10 C -0.114 4.114 11 C 0.485 3.515 12 O -0.579 6.579 13 N -0.592 5.592 14 C 0.112 3.888 15 C -0.123 4.123 16 C -0.108 4.108 17 C 0.039 3.961 18 H -0.007 1.007 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.017 3.983 22 N -0.916 5.916 23 Si 0.950 3.050 24 H -0.272 1.272 25 H -0.288 1.288 26 H -0.270 1.270 27 C 0.113 3.887 28 H 0.055 0.945 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.388 0.612 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.131 0.869 39 H 0.076 0.924 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.039 0.961 43 H 0.061 0.939 44 H 0.035 0.965 45 H 0.259 0.741 46 H 0.114 0.886 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.701 -2.564 -15.780 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.099 3.901 3 O -0.346 6.346 4 C -0.119 4.119 5 C -0.081 4.081 6 C -0.147 4.147 7 C -0.148 4.148 8 C -0.150 4.150 9 C -0.146 4.146 10 C -0.132 4.132 11 C 0.273 3.727 12 O -0.461 6.461 13 N -0.322 5.322 14 C -0.010 4.010 15 C -0.161 4.161 16 C -0.146 4.146 17 C 0.020 3.980 18 H 0.011 0.989 19 C -0.566 4.566 20 H 0.076 0.924 21 C -0.182 4.182 22 N -0.555 5.555 23 Si 0.776 3.224 24 H -0.198 1.198 25 H -0.214 1.214 26 H -0.195 1.195 27 C -0.009 4.009 28 H 0.074 0.926 29 H 0.104 0.896 30 H 0.094 0.906 31 H 0.239 0.761 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.142 0.858 35 H 0.154 0.846 36 H 0.157 0.843 37 H 0.156 0.844 38 H 0.149 0.851 39 H 0.095 0.905 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.054 0.946 45 H 0.068 0.932 46 H 0.131 0.869 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.194 -3.026 -15.679 17.514 hybrid contribution -0.163 0.612 0.838 1.050 sum 7.031 -2.414 -14.841 16.599 Atomic orbital electron populations 1.21940 0.91185 1.03023 1.03963 1.21093 0.96204 0.82657 0.90122 1.86643 1.28017 1.23710 1.96213 1.20925 1.01664 0.99105 0.90174 1.19669 0.95475 0.97155 0.95796 1.21263 0.95956 1.00766 0.96724 1.21386 1.00558 0.96670 0.96174 1.21448 0.95151 0.97633 1.00766 1.21419 0.96849 1.00133 0.96212 1.21210 1.00385 0.95443 0.96117 1.21815 0.78526 0.86226 0.86107 1.90623 1.46909 1.21757 1.86770 1.48373 1.61089 1.16712 1.06016 1.21645 0.97026 0.97678 0.84692 1.21866 0.97253 0.98221 0.98804 1.21470 0.99356 0.93032 1.00732 1.18914 0.92144 0.94898 0.92085 0.98889 1.21389 1.17334 0.93312 1.24606 0.92365 1.25656 0.96494 1.00329 0.95694 1.70013 1.24607 1.32285 1.28623 0.85738 0.77851 0.80941 0.77873 1.19764 1.21423 1.19531 1.22313 0.96142 0.79810 1.02599 0.92564 0.89557 0.90646 0.76142 0.89708 0.89901 0.85787 0.84575 0.84338 0.84353 0.85086 0.90535 0.89984 0.90251 0.94209 0.92013 0.94633 0.93183 0.86863 0.92358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 7.97 71.98 0.57 -3.77 16 2 C 0.14 4.01 0.64 -11.54 -0.01 4.01 16 3 O -0.54 -14.07 9.31 -148.98 -1.39 -15.46 16 4 C -0.08 -1.94 4.00 29.85 0.12 -1.82 16 5 C -0.08 -1.81 4.33 -19.87 -0.09 -1.90 16 6 C -0.13 -2.80 7.90 22.27 0.18 -2.62 16 7 C -0.13 -2.50 10.05 22.27 0.22 -2.28 16 8 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 9 C -0.13 -2.36 10.05 22.27 0.22 -2.13 16 10 C -0.11 -2.30 9.27 22.27 0.21 -2.09 16 11 C 0.49 16.43 6.67 87.66 0.58 17.02 16 12 O -0.58 -21.86 15.41 -3.04 -0.05 -21.91 16 13 N -0.59 -21.07 2.97 -818.88 -2.43 -23.51 16 14 C 0.11 3.83 6.42 86.36 0.55 4.38 16 15 C -0.12 -4.65 6.08 30.67 0.19 -4.47 16 16 C -0.11 -4.91 4.96 30.62 0.15 -4.75 16 17 C 0.04 1.85 2.18 -11.46 -0.02 1.82 16 18 H -0.01 -0.38 7.81 -2.39 -0.02 -0.40 16 19 C -0.53 -27.66 8.56 25.60 0.22 -27.44 16 20 H 0.06 2.97 7.74 -2.91 -0.02 2.94 16 21 C 0.02 0.92 5.30 84.66 0.45 1.37 16 22 N -0.92 -51.64 11.31 21.45 0.24 -51.40 16 23 Si 0.95 42.41 29.54 68.60 2.03 44.44 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 C 0.11 4.36 4.30 86.36 0.37 4.73 16 28 H 0.06 2.04 5.95 -2.39 -0.01 2.03 16 29 H 0.09 2.42 6.19 -2.39 -0.01 2.41 16 30 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 31 H 0.39 7.45 9.04 -74.06 -0.67 6.78 16 32 H 0.08 1.90 8.09 -2.39 -0.02 1.88 16 33 H 0.08 2.11 7.90 -2.38 -0.02 2.09 16 34 H 0.12 2.49 8.04 -2.91 -0.02 2.47 16 35 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 36 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 37 H 0.14 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.13 2.21 8.06 -2.91 -0.02 2.18 16 39 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.08 2.77 7.03 -2.39 -0.02 2.75 16 41 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 42 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 43 H 0.06 3.24 6.04 -2.39 -0.01 3.22 16 44 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 45 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 46 H 0.11 4.31 3.63 -2.38 -0.01 4.30 16 47 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -63.02 365.44 2.85 -60.17 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: 0.30 Total: 29.76 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: 4.15 Total: -22.10 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -2.19 Total: -74.91 kcal Atomic # 8 Polarization: -35.94 SS G_CDS: -1.43 Total: -37.37 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -63.02 2.85 -60.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597909422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.011 kcal (2) G-P(sol) polarization free energy of solvation -63.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds