Wall clock time and date at job start Tue Mar 31 2020 11:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42906 * 113.99875 * 2 1 4 4 C 1.52998 * 109.46809 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.47091 * 300.00666 * 3 2 1 6 6 O 1.21281 * 119.99688 * 138.92741 * 5 3 2 7 7 N 1.34778 * 119.99861 * 318.92142 * 5 3 2 8 8 C 1.46927 * 120.62656 * 174.41181 * 7 5 3 9 9 C 1.53195 * 108.88990 * 126.46614 * 8 7 5 10 10 C 1.53045 * 109.31179 * 54.56345 * 9 8 7 11 11 C 1.53030 * 109.53810 * 298.63447 * 10 9 8 12 12 H 1.09001 * 109.49915 * 301.41321 * 11 10 9 13 13 C 1.50697 * 109.49929 * 181.31509 * 11 10 9 14 14 H 1.07998 * 120.00673 * 240.00059 * 13 11 10 15 15 C 1.37880 * 119.99773 * 59.99890 * 13 11 10 16 16 N 1.31515 * 120.00193 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00012 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.47351 * 90.00044 * 17 15 13 19 19 H 1.48503 * 109.46909 * 210.00012 * 17 15 13 20 20 H 1.48501 * 109.46914 * 329.99565 * 17 15 13 21 21 C 1.46957 * 120.65589 * 354.23412 * 7 5 3 22 22 C 1.50703 * 109.46685 * 60.00368 * 3 2 1 23 23 C 1.38231 * 120.00230 * 282.82129 * 22 3 2 24 24 C 1.38233 * 119.99957 * 179.77089 * 23 22 3 25 25 C 1.38238 * 120.00216 * 0.50378 * 24 23 22 26 26 C 1.38244 * 119.99445 * 359.74889 * 25 24 23 27 27 C 1.38236 * 119.99369 * 103.09672 * 22 3 2 28 28 H 1.08998 * 109.47162 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46596 * 299.99378 * 1 2 3 30 30 H 1.08997 * 109.47220 * 59.99471 * 1 2 3 31 31 H 1.08997 * 109.46860 * 180.02562 * 4 3 2 32 32 H 1.09003 * 109.47119 * 300.00485 * 4 3 2 33 33 H 1.08997 * 109.47044 * 60.00560 * 4 3 2 34 34 H 1.09004 * 109.58500 * 6.61228 * 8 7 5 35 35 H 1.08994 * 109.58593 * 246.32566 * 8 7 5 36 36 H 1.09003 * 109.49266 * 174.51483 * 9 8 7 37 37 H 1.08998 * 109.49978 * 294.61472 * 9 8 7 38 38 H 1.09004 * 109.45602 * 58.65678 * 10 9 8 39 39 H 1.08997 * 109.45807 * 178.62346 * 10 9 8 40 40 H 0.97005 * 120.00074 * 180.02562 * 16 15 13 41 41 H 1.09003 * 109.46484 * 113.74645 * 21 7 5 42 42 H 1.09004 * 109.71129 * 353.45996 * 21 7 5 43 43 H 1.07995 * 119.99959 * 359.97438 * 23 22 3 44 44 H 1.07999 * 120.00278 * 180.22746 * 24 23 22 45 45 H 1.07991 * 120.00217 * 179.72778 * 25 24 23 46 46 H 1.08002 * 119.99768 * 179.97438 * 26 25 24 47 47 H 1.07998 * 120.00654 * 359.97438 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 1.5655 2.0534 -1.2304 6 8 1.2648 3.2257 -1.1517 7 7 1.5020 1.4195 -2.4181 8 6 0.9553 2.0987 -3.6007 9 6 1.9779 2.0141 -4.7382 10 6 2.3542 0.5493 -4.9726 11 6 2.9926 -0.0242 -3.7056 12 1 3.8747 0.5610 -3.4457 13 6 3.3921 -1.4569 -3.9478 14 1 2.9703 -2.2451 -3.3419 15 6 4.2964 -1.7616 -4.9431 16 7 4.8098 -0.8019 -5.6814 17 14 4.7911 -3.5376 -5.2439 18 1 3.8703 -4.1466 -6.2369 19 1 6.1810 -3.5827 -5.7648 20 1 4.7155 -4.2951 -3.9689 21 6 1.9815 0.0373 -2.5563 22 6 1.5656 2.0533 1.2306 23 6 0.2959 2.5965 1.2881 24 6 -0.1136 3.2783 2.4187 25 6 0.7503 3.4258 3.4878 26 6 2.0219 2.8869 3.4281 27 6 2.4296 2.2007 2.2995 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 3.9788 2.1804 -0.0002 32 1 3.8575 0.6435 0.8891 33 1 3.8567 0.6440 -0.8909 34 1 0.7585 3.1442 -3.3633 35 1 0.0286 1.6125 -3.9055 36 1 1.5446 2.4287 -5.6485 37 1 2.8696 2.5801 -4.4686 38 1 1.4583 -0.0209 -5.2180 39 1 3.0634 0.4842 -5.7978 40 1 5.4457 -1.0163 -6.3819 41 1 1.1394 -0.6192 -2.7751 42 1 2.4612 -0.2798 -1.6303 43 1 -0.3774 2.4855 0.4510 44 1 -1.1070 3.6996 2.4652 45 1 0.4319 3.9622 4.3693 46 1 2.6971 3.0025 4.2632 47 1 3.4231 1.7797 2.2530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912161.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:02 Heat of formation + Delta-G solvation = -44.929987 kcal Electronic energy + Delta-G solvation = -28425.824733 eV Core-core repulsion = 24766.956702 eV Total energy + Delta-G solvation = -3658.868031 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.97046 -38.83787 -37.27855 -36.73857 -33.33599 -32.95516 -31.56077 -30.96717 -30.14678 -29.31764 -26.27169 -25.51808 -25.02638 -23.81404 -22.49012 -21.89638 -21.00516 -19.81073 -18.50655 -17.57970 -17.01061 -16.19959 -15.96507 -15.62392 -15.32796 -14.74970 -14.63810 -14.57533 -14.05432 -14.01661 -13.61829 -13.25912 -12.95820 -12.86897 -12.78447 -12.57856 -12.47256 -12.30001 -11.96617 -11.89079 -11.72755 -11.50410 -10.99958 -10.98433 -10.90075 -10.84775 -10.74203 -10.26614 -10.11044 -9.93088 -9.75545 -9.56487 -8.92812 -8.86349 -8.80272 -8.75293 -8.40045 -7.90253 -6.03936 -4.11713 1.28610 1.42547 2.85047 3.27701 3.34908 3.36589 3.40514 3.70044 3.98534 4.39221 4.55781 4.71147 4.93329 4.97529 5.08873 5.18669 5.25630 5.40192 5.45014 5.48555 5.58835 5.63194 5.73293 5.75219 5.82139 5.82814 5.91702 5.95488 6.02840 6.06927 6.24705 6.34389 6.38230 6.44316 6.48799 6.54555 6.59212 6.69716 6.81765 6.90678 6.97514 7.10652 7.16874 7.35748 7.67386 7.88102 7.92623 8.07946 8.34431 8.53553 8.92262 9.53639 11.01238 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020148 B = 0.003996 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.351691 B = 7004.559970 C = 7626.659710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.352 6.352 3 C 0.145 3.855 4 C -0.148 4.148 5 C 0.493 3.507 6 O -0.550 6.550 7 N -0.590 5.590 8 C 0.111 3.889 9 C -0.133 4.133 10 C -0.113 4.113 11 C 0.039 3.961 12 H 0.028 0.972 13 C -0.514 4.514 14 H 0.058 0.942 15 C 0.064 3.936 16 N -0.888 5.888 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 C 0.103 3.897 22 C -0.095 4.095 23 C -0.080 4.080 24 C -0.128 4.128 25 C -0.116 4.116 26 C -0.128 4.128 27 C -0.099 4.099 28 H 0.091 0.909 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.056 0.944 38 H 0.034 0.966 39 H 0.095 0.905 40 H 0.260 0.740 41 H 0.054 0.946 42 H 0.098 0.902 43 H 0.119 0.881 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.122 0.878 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.713 5.304 13.538 16.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.270 6.270 3 C 0.103 3.897 4 C -0.205 4.205 5 C 0.280 3.720 6 O -0.429 6.429 7 N -0.321 5.321 8 C -0.011 4.011 9 C -0.171 4.171 10 C -0.151 4.151 11 C 0.020 3.980 12 H 0.047 0.953 13 C -0.552 4.552 14 H 0.076 0.924 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.198 1.198 21 C -0.018 4.018 22 C -0.096 4.096 23 C -0.098 4.098 24 C -0.146 4.146 25 C -0.134 4.134 26 C -0.146 4.146 27 C -0.117 4.117 28 H 0.109 0.891 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.053 0.947 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.072 0.928 42 H 0.116 0.884 43 H 0.137 0.863 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.140 0.860 47 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.637 5.758 13.404 16.466 hybrid contribution 0.050 -0.747 -0.446 0.872 sum -7.586 5.010 12.958 15.829 Atomic orbital electron populations 1.23021 0.81335 1.03190 1.00433 1.88117 1.19883 1.24715 1.94301 1.20450 0.96237 0.83170 0.89845 1.22020 0.89855 1.03586 1.05010 1.20925 0.78393 0.87439 0.85289 1.90655 1.50468 1.15926 1.85852 1.48356 1.59787 1.16106 1.07870 1.21610 0.96303 0.97614 0.85608 1.21981 0.98153 1.00795 0.96162 1.21640 0.99980 0.90537 1.02938 1.19003 0.92618 0.96615 0.89801 0.95349 1.21057 1.24930 0.92044 1.17214 0.92383 1.24937 0.95867 0.97082 0.95866 1.69878 1.30154 1.31504 1.21095 0.86606 0.77753 0.85203 0.78518 1.20744 1.21292 1.19801 1.22508 0.98284 0.78507 1.02484 1.19870 0.94953 0.99497 0.95284 1.21060 0.95594 0.95769 0.97374 1.21085 0.99864 0.99887 0.93789 1.21143 0.94175 0.99652 0.98467 1.21096 0.96433 0.99020 0.98092 1.21145 0.99609 0.98186 0.92752 0.89075 0.93254 0.93751 0.90448 0.90327 0.89255 0.90414 0.92315 0.92610 0.92471 0.94679 0.88680 0.92967 0.92757 0.88445 0.86313 0.86190 0.86280 0.86027 0.85296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.25 101.05 0.93 1.16 16 2 O -0.35 -5.55 7.58 -35.23 -0.27 -5.82 16 3 C 0.15 2.32 0.64 -92.92 -0.06 2.26 16 4 C -0.15 -2.21 7.42 37.16 0.28 -1.93 16 5 C 0.49 9.02 4.72 -10.98 -0.05 8.96 16 6 O -0.55 -11.14 14.22 5.56 0.08 -11.06 16 7 N -0.59 -10.98 2.60 -172.74 -0.45 -11.43 16 8 C 0.11 1.98 6.44 -3.71 -0.02 1.96 16 9 C -0.13 -2.54 6.08 -26.61 -0.16 -2.70 16 10 C -0.11 -2.54 4.96 -26.69 -0.13 -2.67 16 11 C 0.04 0.91 2.25 -91.66 -0.21 0.70 16 12 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 13 C -0.51 -13.26 8.56 -34.44 -0.29 -13.55 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 16 N -0.89 -24.36 11.31 55.43 0.63 -23.73 16 17 Si 0.89 20.49 29.54 -169.99 -5.02 15.47 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 21 C 0.10 2.04 4.06 -3.69 -0.02 2.03 16 22 C -0.10 -1.40 4.38 -104.62 -0.46 -1.86 16 23 C -0.08 -1.14 6.16 -39.59 -0.24 -1.38 16 24 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 25 C -0.12 -1.27 10.05 -39.58 -0.40 -1.66 16 26 C -0.13 -1.43 10.05 -39.58 -0.40 -1.83 16 27 C -0.10 -1.27 9.11 -39.58 -0.36 -1.63 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.62 5.49 -51.93 -0.29 0.33 16 30 H 0.04 0.63 6.87 -51.93 -0.36 0.27 16 31 H 0.08 1.11 8.13 -51.93 -0.42 0.69 16 32 H 0.08 0.99 6.79 -51.93 -0.35 0.64 16 33 H 0.09 1.51 6.33 -51.93 -0.33 1.18 16 34 H 0.08 1.38 7.00 -51.93 -0.36 1.02 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 40 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.10 1.90 3.65 -51.93 -0.19 1.71 16 43 H 0.12 1.76 6.25 -52.49 -0.33 1.43 16 44 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 46 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 47 H 0.13 1.44 5.96 -52.49 -0.31 1.13 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -29.21 355.79 -8.78 -37.99 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.02 Total: 5.72 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -2.09 Total: -12.50 kcal Atomic # 7 Polarization: -35.34 SS G_CDS: 0.18 Total: -35.17 kcal Atomic # 8 Polarization: -16.69 SS G_CDS: -0.19 Total: -16.87 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.21 -8.78 -37.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912161.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.937 kcal (2) G-P(sol) polarization free energy of solvation -29.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds