Wall clock time and date at job start Tue Mar 31 2020 11:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 113.99771 * 2 1 4 4 C 1.53004 * 109.47182 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47378 * 59.99894 * 3 2 1 6 6 O 1.21274 * 119.99904 * 233.91157 * 5 3 2 7 7 N 1.34780 * 119.99714 * 53.63352 * 5 3 2 8 8 C 1.46917 * 120.63020 * 356.14701 * 7 5 3 9 9 C 1.53200 * 108.77167 * 233.58208 * 8 7 5 10 10 C 1.53033 * 109.31482 * 305.36825 * 9 8 7 11 11 C 1.53042 * 109.53853 * 61.36234 * 10 9 8 12 12 H 1.08999 * 109.49753 * 58.61950 * 11 10 9 13 13 C 1.50706 * 109.49489 * 178.68331 * 11 10 9 14 14 H 1.08001 * 119.99306 * 120.00247 * 13 11 10 15 15 C 1.37875 * 120.00148 * 300.00196 * 13 11 10 16 16 N 1.31513 * 119.99768 * 180.02562 * 15 13 11 17 17 Si 1.86795 * 120.00084 * 0.02562 * 15 13 11 18 18 H 1.48495 * 109.47218 * 89.99827 * 17 15 13 19 19 H 1.48503 * 109.47064 * 210.00243 * 17 15 13 20 20 H 1.48501 * 109.47214 * 330.00273 * 17 15 13 21 21 C 1.46920 * 120.62458 * 175.86226 * 7 5 3 22 22 C 1.50703 * 109.47326 * 299.99561 * 3 2 1 23 23 C 1.38236 * 119.99892 * 164.46787 * 22 3 2 24 24 C 1.38234 * 119.99292 * 179.74691 * 23 22 3 25 25 C 1.38231 * 120.00405 * 0.55436 * 24 23 22 26 26 C 1.38240 * 119.99730 * 359.69903 * 25 24 23 27 27 C 1.38232 * 120.00143 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47053 * 60.00544 * 1 2 3 29 29 H 1.09008 * 109.46849 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47352 * 299.99856 * 1 2 3 31 31 H 1.09000 * 109.47230 * 304.67989 * 4 3 2 32 32 H 1.09000 * 109.46857 * 64.67787 * 4 3 2 33 33 H 1.08996 * 109.47227 * 184.68440 * 4 3 2 34 34 H 1.08996 * 109.58971 * 353.37143 * 8 7 5 35 35 H 1.09000 * 109.58902 * 113.79733 * 8 7 5 36 36 H 1.09002 * 109.49774 * 65.32190 * 9 8 7 37 37 H 1.09008 * 109.49661 * 185.38191 * 9 8 7 38 38 H 1.09004 * 109.46102 * 181.38902 * 10 9 8 39 39 H 1.09002 * 109.46009 * 301.34485 * 10 9 8 40 40 H 0.97006 * 119.99814 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.58837 * 246.20000 * 21 7 5 42 42 H 1.08997 * 109.58945 * 6.62913 * 21 7 5 43 43 H 1.07995 * 120.00405 * 0.02562 * 23 22 3 44 44 H 1.08004 * 119.99633 * 180.27104 * 24 23 22 45 45 H 1.07999 * 120.00384 * 179.72253 * 25 24 23 46 46 H 1.08004 * 119.99737 * 180.02562 * 26 25 24 47 47 H 1.07999 * 119.99754 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 1.5654 2.0533 1.2305 6 8 1.0464 3.1441 1.1226 7 7 1.7394 1.5075 2.4505 8 6 2.2834 0.1501 2.5925 9 6 1.3250 -0.6772 3.4552 10 6 1.0859 0.0463 4.7823 11 6 0.4410 1.4080 4.5140 12 1 -0.4990 1.2666 3.9806 13 6 0.1764 2.1059 5.8233 14 1 0.6356 3.0617 6.0280 15 6 -0.6518 1.5242 6.7595 16 7 -0.8831 2.1335 7.9018 17 14 -1.4454 -0.1294 6.4055 18 1 -0.5547 -1.2180 6.8815 19 1 -2.7499 -0.2133 7.1101 20 1 -1.6626 -0.2713 4.9433 21 6 1.3946 2.2610 3.6636 22 6 1.5655 2.0533 -1.2305 23 6 1.7259 3.4245 -1.3016 24 6 1.3228 4.1096 -2.4325 25 6 0.7490 3.4253 -3.4875 26 6 0.5839 2.0547 -3.4142 27 6 0.9921 1.3687 -2.2857 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.8511 0.5733 0.8460 32 1 3.8633 0.7177 -0.9281 33 1 3.9784 2.1770 0.0846 34 1 2.3794 -0.3099 1.6091 35 1 3.2604 0.1964 3.0735 36 1 0.3770 -0.7990 2.9312 37 1 1.7626 -1.6568 3.6479 38 1 0.4238 -0.5522 5.4080 39 1 2.0375 0.1897 5.2943 40 1 -1.4661 1.7244 8.5604 41 1 2.3006 2.4760 4.2302 42 1 0.9040 3.1943 3.3871 43 1 2.1701 3.9598 -0.4755 44 1 1.4521 5.1804 -2.4898 45 1 0.4300 3.9612 -4.3692 46 1 0.1359 1.5200 -4.2388 47 1 0.8627 0.2981 -2.2284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597912164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:11 Heat of formation + Delta-G solvation = -35.217642 kcal Electronic energy + Delta-G solvation = -28434.584972 eV Core-core repulsion = 24776.138100 eV Total energy + Delta-G solvation = -3658.446872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.13246 -38.95067 -37.50129 -37.00071 -33.55797 -32.86702 -31.78361 -30.93472 -30.57469 -29.65551 -26.45919 -25.79249 -25.09595 -23.89572 -22.69957 -21.66751 -21.64791 -19.82246 -18.72956 -17.70025 -17.04555 -16.67815 -16.07905 -15.82618 -15.47764 -15.10420 -14.71226 -14.47207 -14.24364 -13.98631 -13.69805 -13.53696 -13.34284 -13.10135 -12.85520 -12.68461 -12.59625 -12.47092 -12.26995 -12.20919 -12.07848 -11.80119 -11.25905 -11.13624 -11.09911 -11.02168 -10.67671 -10.36880 -10.22408 -10.14182 -9.84304 -9.51328 -9.15471 -8.91072 -8.82092 -8.77023 -8.58346 -8.10766 -6.11598 -4.11640 1.25026 1.41093 2.68266 3.22480 3.23969 3.34373 3.36523 3.58129 3.77521 4.36739 4.39749 4.53266 4.87844 4.95240 4.99568 5.12172 5.17611 5.27608 5.36411 5.38575 5.40261 5.43042 5.44047 5.55593 5.58225 5.70041 5.72744 5.88279 5.89254 5.94155 6.02022 6.02654 6.14143 6.17462 6.38938 6.40200 6.46049 6.48996 6.50740 6.66287 6.71537 6.85097 6.92105 6.95646 7.11337 7.43857 7.70195 7.79270 8.38604 8.46226 8.91388 9.50082 11.01415 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.003959 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.321962 B = 7071.187884 C = 7322.079291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.360 6.360 3 C 0.144 3.856 4 C -0.139 4.139 5 C 0.492 3.508 6 O -0.534 6.534 7 N -0.593 5.593 8 C 0.092 3.908 9 C -0.135 4.135 10 C -0.123 4.123 11 C 0.008 3.992 12 H 0.028 0.972 13 C -0.515 4.515 14 H 0.076 0.924 15 C 0.072 3.928 16 N -0.899 5.899 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.298 1.298 20 H -0.267 1.267 21 C 0.124 3.876 22 C -0.107 4.107 23 C -0.068 4.068 24 C -0.129 4.129 25 C -0.116 4.116 26 C -0.133 4.133 27 C -0.105 4.105 28 H 0.058 0.942 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.062 0.938 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.264 0.736 41 H 0.064 0.936 42 H 0.085 0.915 43 H 0.131 0.869 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.120 0.880 47 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.408 -4.844 -21.113 22.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.278 6.278 3 C 0.101 3.899 4 C -0.196 4.196 5 C 0.277 3.723 6 O -0.411 6.411 7 N -0.325 5.325 8 C -0.030 4.030 9 C -0.173 4.173 10 C -0.160 4.160 11 C -0.012 4.012 12 H 0.047 0.953 13 C -0.553 4.553 14 H 0.094 0.906 15 C -0.130 4.130 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.205 1.205 19 H -0.225 1.225 20 H -0.192 1.192 21 C 0.003 3.997 22 C -0.108 4.108 23 C -0.086 4.086 24 C -0.147 4.147 25 C -0.134 4.134 26 C -0.151 4.151 27 C -0.123 4.123 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.067 0.933 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.103 0.897 43 H 0.149 0.851 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.138 0.862 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.149 -4.437 -20.967 22.592 hybrid contribution -0.820 -0.787 0.191 1.152 sum 6.329 -5.224 -20.776 22.338 Atomic orbital electron populations 1.23120 0.80360 1.03214 1.01801 1.87897 1.20615 1.25128 1.94205 1.20523 0.95786 0.83093 0.90506 1.21938 0.89873 1.03633 1.04173 1.20858 0.79586 0.86784 0.85069 1.90687 1.43080 1.21548 1.85815 1.48306 1.61879 1.16196 1.06070 1.22191 0.96446 0.82079 1.02315 1.21955 0.99355 0.98218 0.97770 1.21998 1.01174 0.98194 0.94677 1.19517 0.93984 0.91717 0.95981 0.95346 1.20911 1.29080 1.06900 0.98411 0.90633 1.24974 0.95779 0.97434 0.94795 1.69894 1.37513 1.38955 1.07282 0.86823 0.78047 0.84533 0.78678 1.20548 1.22530 1.19196 1.21918 0.99156 0.95712 0.82869 1.19875 1.01436 0.94475 0.95006 1.21176 0.97361 0.93218 0.96892 1.21159 0.99888 0.99940 0.93745 1.21164 0.99056 0.94532 0.98645 1.21043 1.01506 0.94547 0.97996 1.21019 0.98021 1.00274 0.92953 0.92398 0.88976 0.93238 0.90258 0.90556 0.90451 0.87505 0.91962 0.92311 0.91799 0.93313 0.91978 0.92591 0.91782 0.89681 0.85074 0.86083 0.86340 0.86193 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.74 101.05 0.98 1.12 16 2 O -0.36 -4.59 6.97 -35.23 -0.25 -4.83 16 3 C 0.14 1.92 0.53 -92.92 -0.05 1.87 16 4 C -0.14 -1.50 8.47 37.16 0.31 -1.18 16 5 C 0.49 8.31 5.08 -10.98 -0.06 8.25 16 6 O -0.53 -10.61 13.04 5.56 0.07 -10.54 16 7 N -0.59 -10.21 2.97 -172.51 -0.51 -10.72 16 8 C 0.09 1.34 4.79 -3.71 -0.02 1.32 16 9 C -0.13 -2.19 6.08 -26.61 -0.16 -2.35 16 10 C -0.12 -2.52 4.65 -26.69 -0.12 -2.64 16 11 C 0.01 0.17 1.86 -91.42 -0.17 0.01 16 12 H 0.03 0.71 7.21 -51.93 -0.37 0.33 16 13 C -0.51 -14.24 9.15 -34.44 -0.31 -14.55 16 14 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 15 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 16 N -0.90 -27.31 13.96 55.43 0.77 -26.54 16 17 Si 0.89 21.83 24.38 -169.99 -4.15 17.69 16 18 H -0.28 -6.59 6.86 56.52 0.39 -6.20 16 19 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.27 -6.34 6.53 56.52 0.37 -5.97 16 21 C 0.12 2.54 5.69 -3.49 -0.02 2.52 16 22 C -0.11 -1.43 4.18 -104.62 -0.44 -1.86 16 23 C -0.07 -0.94 8.16 -39.58 -0.32 -1.26 16 24 C -0.13 -1.53 10.05 -39.59 -0.40 -1.92 16 25 C -0.12 -1.22 10.05 -39.58 -0.40 -1.62 16 26 C -0.13 -1.39 10.05 -39.58 -0.40 -1.79 16 27 C -0.10 -1.23 7.46 -39.59 -0.30 -1.52 16 28 H 0.06 0.70 5.11 -51.93 -0.27 0.44 16 29 H 0.09 0.95 8.14 -51.92 -0.42 0.52 16 30 H 0.05 0.76 7.15 -51.93 -0.37 0.39 16 31 H 0.08 0.80 5.88 -51.93 -0.31 0.49 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.11 1.37 3.71 -51.93 -0.19 1.18 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 38 H 0.05 1.08 3.25 -51.93 -0.17 0.91 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 40 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.08 1.89 7.00 -51.93 -0.36 1.53 16 43 H 0.13 1.92 6.59 -52.49 -0.35 1.58 16 44 H 0.12 1.20 8.06 -52.48 -0.42 0.77 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.12 0.97 8.06 -52.48 -0.42 0.54 16 47 H 0.13 1.35 6.18 -52.49 -0.32 1.03 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -31.71 350.93 -7.69 -39.41 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.96 Total: 3.90 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: -1.96 Total: -13.65 kcal Atomic # 7 Polarization: -37.52 SS G_CDS: 0.26 Total: -37.26 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.17 Total: -15.37 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.15 Total: 17.69 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.71 -7.69 -39.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.187 kcal (2) G-P(sol) polarization free energy of solvation -31.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds