Wall clock time and date at job start Tue Mar 31 2020 11:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42893 * 113.99771 * 2 1 4 4 C 1.53004 * 109.47182 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.47378 * 59.99894 * 3 2 1 6 6 O 1.21274 * 119.99904 * 233.91157 * 5 3 2 7 7 N 1.34780 * 119.99714 * 53.63352 * 5 3 2 8 8 C 1.46917 * 120.63020 * 356.14701 * 7 5 3 9 9 C 1.53200 * 108.77167 * 233.58208 * 8 7 5 10 10 C 1.53033 * 109.31482 * 305.36825 * 9 8 7 11 11 C 1.53042 * 109.53853 * 61.36234 * 10 9 8 12 12 H 1.08999 * 109.49753 * 58.61950 * 11 10 9 13 13 C 1.50706 * 109.49489 * 178.68331 * 11 10 9 14 14 H 1.08001 * 119.99306 * 120.00247 * 13 11 10 15 15 C 1.37875 * 120.00148 * 300.00196 * 13 11 10 16 16 N 1.31513 * 119.99768 * 180.02562 * 15 13 11 17 17 Si 1.86795 * 120.00084 * 0.02562 * 15 13 11 18 18 H 1.48495 * 109.47218 * 89.99827 * 17 15 13 19 19 H 1.48503 * 109.47064 * 210.00243 * 17 15 13 20 20 H 1.48501 * 109.47214 * 330.00273 * 17 15 13 21 21 C 1.46920 * 120.62458 * 175.86226 * 7 5 3 22 22 C 1.50703 * 109.47326 * 299.99561 * 3 2 1 23 23 C 1.38236 * 119.99892 * 164.46787 * 22 3 2 24 24 C 1.38234 * 119.99292 * 179.74691 * 23 22 3 25 25 C 1.38231 * 120.00405 * 0.55436 * 24 23 22 26 26 C 1.38240 * 119.99730 * 359.69903 * 25 24 23 27 27 C 1.38232 * 120.00143 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47053 * 60.00544 * 1 2 3 29 29 H 1.09008 * 109.46849 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47352 * 299.99856 * 1 2 3 31 31 H 1.09000 * 109.47230 * 304.67989 * 4 3 2 32 32 H 1.09000 * 109.46857 * 64.67787 * 4 3 2 33 33 H 1.08996 * 109.47227 * 184.68440 * 4 3 2 34 34 H 1.08996 * 109.58971 * 353.37143 * 8 7 5 35 35 H 1.09000 * 109.58902 * 113.79733 * 8 7 5 36 36 H 1.09002 * 109.49774 * 65.32190 * 9 8 7 37 37 H 1.09008 * 109.49661 * 185.38191 * 9 8 7 38 38 H 1.09004 * 109.46102 * 181.38902 * 10 9 8 39 39 H 1.09002 * 109.46009 * 301.34485 * 10 9 8 40 40 H 0.97006 * 119.99814 * 179.97438 * 16 15 13 41 41 H 1.09003 * 109.58837 * 246.20000 * 21 7 5 42 42 H 1.08997 * 109.58945 * 6.62913 * 21 7 5 43 43 H 1.07995 * 120.00405 * 0.02562 * 23 22 3 44 44 H 1.08004 * 119.99633 * 180.27104 * 24 23 22 45 45 H 1.07999 * 120.00384 * 179.72253 * 25 24 23 46 46 H 1.08004 * 119.99737 * 180.02562 * 26 25 24 47 47 H 1.07999 * 119.99754 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 6 1.5654 2.0533 1.2305 6 8 1.0464 3.1441 1.1226 7 7 1.7394 1.5075 2.4505 8 6 2.2834 0.1501 2.5925 9 6 1.3250 -0.6772 3.4552 10 6 1.0859 0.0463 4.7823 11 6 0.4410 1.4080 4.5140 12 1 -0.4990 1.2666 3.9806 13 6 0.1764 2.1059 5.8233 14 1 0.6356 3.0617 6.0280 15 6 -0.6518 1.5242 6.7595 16 7 -0.8831 2.1335 7.9018 17 14 -1.4454 -0.1294 6.4055 18 1 -0.5547 -1.2180 6.8815 19 1 -2.7499 -0.2133 7.1101 20 1 -1.6626 -0.2713 4.9433 21 6 1.3946 2.2610 3.6636 22 6 1.5655 2.0533 -1.2305 23 6 1.7259 3.4245 -1.3016 24 6 1.3228 4.1096 -2.4325 25 6 0.7490 3.4253 -3.4875 26 6 0.5839 2.0547 -3.4142 27 6 0.9921 1.3687 -2.2857 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.8511 0.5733 0.8460 32 1 3.8633 0.7177 -0.9281 33 1 3.9784 2.1770 0.0846 34 1 2.3794 -0.3099 1.6091 35 1 3.2604 0.1964 3.0735 36 1 0.3770 -0.7990 2.9312 37 1 1.7626 -1.6568 3.6479 38 1 0.4238 -0.5522 5.4080 39 1 2.0375 0.1897 5.2943 40 1 -1.4661 1.7244 8.5604 41 1 2.3006 2.4760 4.2302 42 1 0.9040 3.1943 3.3871 43 1 2.1701 3.9598 -0.4755 44 1 1.4521 5.1804 -2.4898 45 1 0.4300 3.9612 -4.3692 46 1 0.1359 1.5200 -4.2388 47 1 0.8627 0.2981 -2.2284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597912164.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:10 Heat of formation + Delta-G solvation = -54.891964 kcal Electronic energy + Delta-G solvation = -28435.438114 eV Core-core repulsion = 24776.138100 eV Total energy + Delta-G solvation = -3659.300014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.28594 -40.10341 -38.57119 -38.44807 -35.35455 -33.96422 -33.45566 -32.22006 -31.76744 -30.63577 -27.53027 -27.24298 -26.77442 -25.00678 -23.62301 -23.23217 -22.80974 -21.25418 -20.10241 -18.93290 -18.74619 -18.02206 -17.33926 -16.86602 -16.66288 -16.50000 -16.11731 -15.64631 -15.48137 -15.33531 -15.05283 -14.85631 -14.72821 -14.32096 -14.25927 -14.09116 -13.77175 -13.56842 -13.50536 -13.23199 -13.16312 -12.98771 -12.76371 -12.60841 -12.39748 -12.15079 -12.06002 -11.93611 -11.86268 -11.54155 -11.38581 -11.23346 -11.06725 -10.71199 -10.22127 -9.73625 -9.68052 -9.58085 -8.34358 -6.39458 0.35956 0.52389 1.25667 1.32916 1.39068 1.43224 1.94944 2.28483 2.54971 2.86376 3.00560 3.32001 3.48405 3.96144 4.02554 4.06075 4.10580 4.18732 4.19336 4.29007 4.30130 4.36055 4.42544 4.49168 4.59042 4.61291 4.65831 4.68442 4.72666 4.76567 4.79800 4.92877 4.98726 5.03845 5.08256 5.11566 5.13441 5.16096 5.34739 5.40275 5.51598 5.55281 5.61461 5.62968 5.71541 5.89448 6.09735 6.22642 6.45280 6.66453 7.05844 7.26230 8.82351 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021380 B = 0.003959 C = 0.003823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1309.321962 B = 7071.187884 C = 7322.079291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.351 6.351 3 C 0.152 3.848 4 C -0.138 4.138 5 C 0.487 3.513 6 O -0.572 6.572 7 N -0.595 5.595 8 C 0.091 3.909 9 C -0.129 4.129 10 C -0.121 4.121 11 C 0.012 3.988 12 H 0.010 0.990 13 C -0.523 4.523 14 H 0.033 0.967 15 C 0.015 3.985 16 N -0.947 5.947 17 Si 0.954 3.046 18 H -0.256 1.256 19 H -0.301 1.301 20 H -0.255 1.255 21 C 0.136 3.864 22 C -0.123 4.123 23 C -0.092 4.092 24 C -0.140 4.140 25 C -0.116 4.116 26 C -0.131 4.131 27 C -0.109 4.109 28 H 0.062 0.938 29 H 0.121 0.879 30 H 0.015 0.985 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.132 0.868 35 H 0.083 0.917 36 H 0.054 0.946 37 H 0.102 0.898 38 H 0.037 0.963 39 H 0.065 0.935 40 H 0.267 0.733 41 H 0.066 0.934 42 H 0.055 0.945 43 H 0.108 0.892 44 H 0.132 0.868 45 H 0.147 0.853 46 H 0.150 0.850 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.090 -8.211 -24.282 26.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.269 6.269 3 C 0.109 3.891 4 C -0.195 4.195 5 C 0.274 3.726 6 O -0.452 6.452 7 N -0.326 5.326 8 C -0.030 4.030 9 C -0.167 4.167 10 C -0.158 4.158 11 C -0.008 4.008 12 H 0.028 0.972 13 C -0.561 4.561 14 H 0.052 0.948 15 C -0.183 4.183 16 N -0.587 5.587 17 Si 0.781 3.219 18 H -0.182 1.182 19 H -0.229 1.229 20 H -0.179 1.179 21 C 0.013 3.987 22 C -0.124 4.124 23 C -0.111 4.111 24 C -0.158 4.158 25 C -0.134 4.134 26 C -0.148 4.148 27 C -0.127 4.127 28 H 0.081 0.919 29 H 0.140 0.860 30 H 0.034 0.966 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.126 0.874 44 H 0.150 0.850 45 H 0.164 0.836 46 H 0.168 0.832 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 7.864 -7.827 -24.160 26.586 hybrid contribution -1.047 0.428 1.147 1.612 sum 6.816 -7.399 -23.013 25.116 Atomic orbital electron populations 1.23190 0.80221 1.04664 1.00380 1.87893 1.20676 1.24391 1.93948 1.20483 0.97283 0.82874 0.88419 1.21995 0.87702 1.04038 1.05744 1.21666 0.78487 0.86543 0.85877 1.90669 1.44573 1.23488 1.86448 1.48331 1.62063 1.17160 1.05050 1.22461 0.96735 0.80117 1.03669 1.21942 0.99996 0.99633 0.95113 1.21871 1.00541 0.96213 0.97221 1.19382 0.94116 0.93716 0.93569 0.97237 1.21220 1.28569 1.05745 1.00589 0.94817 1.25853 0.96411 1.01619 0.94381 1.70048 1.38880 1.41158 1.08648 0.85766 0.76988 0.80081 0.79085 1.18159 1.22873 1.17914 1.21462 0.98357 0.94629 0.84225 1.19942 1.02543 0.94357 0.95559 1.21132 0.98882 0.93847 0.97205 1.21388 0.99978 1.00754 0.93724 1.21523 0.97950 0.94946 0.98941 1.21445 1.00417 0.94666 0.98316 1.21225 0.97605 1.01027 0.92825 0.91926 0.86048 0.96591 0.89176 0.88485 0.90701 0.85068 0.89873 0.92750 0.87994 0.94514 0.91671 0.92430 0.91610 0.92676 0.87357 0.84997 0.83569 0.83190 0.83914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.25 9.74 113.37 1.10 1.36 16 2 O -0.35 -7.85 6.97 -148.98 -1.04 -8.89 16 3 C 0.15 3.83 0.53 -12.28 -0.01 3.82 16 4 C -0.14 -2.63 8.47 71.98 0.61 -2.02 16 5 C 0.49 16.51 5.08 87.66 0.45 16.95 16 6 O -0.57 -23.85 13.04 -3.01 -0.04 -23.89 16 7 N -0.59 -20.24 2.97 -818.08 -2.43 -22.66 16 8 C 0.09 2.37 4.79 86.37 0.41 2.79 16 9 C -0.13 -3.74 6.08 30.67 0.19 -3.56 16 10 C -0.12 -4.76 4.65 30.62 0.14 -4.62 16 11 C 0.01 0.55 1.86 -11.31 -0.02 0.53 16 12 H 0.01 0.48 7.21 -2.39 -0.02 0.47 16 13 C -0.52 -30.31 9.15 25.60 0.23 -30.08 16 14 H 0.03 2.16 7.99 -2.91 -0.02 2.14 16 15 C 0.01 0.86 5.45 84.65 0.46 1.33 16 16 N -0.95 -59.82 13.96 21.45 0.30 -59.52 16 17 Si 0.95 45.32 24.38 68.60 1.67 46.99 16 18 H -0.26 -11.20 6.86 99.48 0.68 -10.52 16 19 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 20 H -0.25 -11.48 6.53 99.48 0.65 -10.84 16 21 C 0.14 5.78 5.69 86.51 0.49 6.27 16 22 C -0.12 -3.14 4.18 -19.87 -0.08 -3.22 16 23 C -0.09 -2.55 8.16 22.27 0.18 -2.37 16 24 C -0.14 -3.21 10.05 22.27 0.22 -2.99 16 25 C -0.12 -2.14 10.05 22.27 0.22 -1.92 16 26 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 27 C -0.11 -2.26 7.46 22.27 0.17 -2.09 16 28 H 0.06 1.37 5.11 -2.39 -0.01 1.36 16 29 H 0.12 2.03 8.14 -2.38 -0.02 2.01 16 30 H 0.02 0.47 7.15 -2.39 -0.02 0.45 16 31 H 0.09 1.50 5.88 -2.39 -0.01 1.49 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.46 16 33 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.13 2.84 3.71 -2.39 -0.01 2.83 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.04 1.53 3.25 -2.38 -0.01 1.53 16 39 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 40 H 0.27 15.74 8.31 -92.70 -0.77 14.96 16 41 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 42 H 0.05 2.64 7.00 -2.39 -0.02 2.62 16 43 H 0.11 3.40 6.59 -2.91 -0.02 3.38 16 44 H 0.13 2.56 8.06 -2.91 -0.02 2.54 16 45 H 0.15 1.84 8.06 -2.91 -0.02 1.82 16 46 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 47 H 0.14 2.48 6.18 -2.91 -0.02 2.47 16 Total: -1.00 -73.63 350.93 4.35 -69.27 By element: Atomic # 1 Polarization: 19.72 SS G_CDS: 0.89 Total: 20.61 kcal Atomic # 6 Polarization: -26.91 SS G_CDS: 5.00 Total: -21.91 kcal Atomic # 7 Polarization: -80.06 SS G_CDS: -2.13 Total: -82.18 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.08 Total: -32.78 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.67 Total: 46.99 kcal Total: -73.63 4.35 -69.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597912164.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.380 kcal (2) G-P(sol) polarization free energy of solvation -73.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds