Wall clock time and date at job start Tue Mar 31 2020 12:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47494 * 2 1 4 4 C 1.38168 * 120.02815 * 265.32484 * 3 2 1 5 5 C 1.38248 * 120.05602 * 180.29469 * 4 3 2 6 6 C 1.38287 * 120.10781 * 359.67679 * 5 4 3 7 7 C 1.38129 * 120.05845 * 0.02562 * 6 5 4 8 8 C 1.38708 * 120.02671 * 85.00178 * 3 2 1 9 9 O 1.35898 * 120.05588 * 359.97438 * 8 3 2 10 10 C 1.42904 * 116.99765 * 179.72855 * 9 8 3 11 11 C 1.50705 * 109.46768 * 180.02562 * 10 9 8 12 12 O 1.21277 * 120.00344 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99819 * 179.97438 * 11 10 9 14 14 C 1.46926 * 120.63044 * 359.97438 * 13 11 10 15 15 C 1.53192 * 108.77820 * 126.36870 * 14 13 11 16 16 C 1.53043 * 109.30860 * 54.63429 * 15 14 13 17 17 C 1.53037 * 109.53919 * 298.63563 * 16 15 14 18 18 H 1.08997 * 109.49928 * 301.41588 * 17 16 15 19 19 C 1.50701 * 109.52364 * 181.33412 * 17 16 15 20 20 H 1.07996 * 120.00165 * 0.15112 * 19 17 16 21 21 C 1.37881 * 119.99606 * 180.14200 * 19 17 16 22 22 N 1.31509 * 120.00180 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99401 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46938 * 60.00654 * 23 21 19 25 25 H 1.48503 * 109.46654 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47625 * 300.00326 * 23 21 19 27 27 C 1.46925 * 120.63041 * 179.97438 * 13 11 10 28 28 H 1.09007 * 109.46862 * 299.99880 * 1 2 3 29 29 H 1.08997 * 109.47672 * 59.99719 * 1 2 3 30 30 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46862 * 240.00120 * 2 1 3 32 32 H 1.08997 * 109.47672 * 120.00281 * 2 1 3 33 33 H 1.08001 * 119.97362 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.94545 * 179.70011 * 5 4 3 35 35 H 1.07999 * 119.97133 * 180.02562 * 6 5 4 36 36 H 1.07999 * 120.02574 * 180.02562 * 7 6 5 37 37 H 1.08996 * 109.47077 * 60.00021 * 10 9 8 38 38 H 1.09003 * 109.47036 * 299.99951 * 10 9 8 39 39 H 1.09006 * 109.58406 * 246.15786 * 14 13 11 40 40 H 1.09002 * 109.59019 * 6.57775 * 14 13 11 41 41 H 1.09001 * 109.49595 * 174.58602 * 15 14 13 42 42 H 1.09000 * 109.49611 * 294.68450 * 15 14 13 43 43 H 1.08997 * 109.45405 * 178.61356 * 16 15 14 44 44 H 1.09002 * 109.44862 * 58.64978 * 16 15 14 45 45 H 0.97007 * 119.99876 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.58340 * 353.41744 * 27 13 11 47 47 H 1.09003 * 109.58494 * 113.70309 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3548 2.0401 -1.1923 5 6 2.8216 3.3414 -1.1924 6 6 2.9606 4.0287 -0.0005 7 6 2.6338 3.4160 1.1936 8 6 2.1652 2.1100 1.1964 9 8 1.8419 1.5054 2.3697 10 6 2.0094 2.2736 3.5630 11 6 1.6047 1.4448 4.7549 12 8 1.2113 0.3084 4.5978 13 7 1.6801 1.9664 5.9953 14 6 2.1553 3.3413 6.2016 15 6 1.1108 4.1065 7.0204 16 6 0.8214 3.3408 8.3135 17 6 0.2534 1.9606 7.9749 18 1 -0.6566 2.0761 7.3863 19 6 -0.0620 1.2195 9.2486 20 1 0.1215 1.6867 10.2048 21 6 -0.5851 -0.0550 9.1931 22 7 -0.8083 -0.6241 8.0287 23 14 -0.9755 -0.9739 10.7719 24 1 -1.9783 -0.2083 11.5552 25 1 -1.5228 -2.3144 10.4420 26 1 0.2647 -1.1297 11.5736 27 6 1.2887 1.1710 7.1670 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.2471 1.5055 -2.1244 34 1 3.0777 3.8222 -2.1250 35 1 3.3250 5.0453 -0.0032 36 1 2.7422 3.9534 2.1241 37 1 1.3851 3.1656 3.5115 38 1 3.0545 2.5668 3.6628 39 1 3.1018 3.3236 6.7419 40 1 2.2922 3.8294 5.2366 41 1 1.4934 5.0980 7.2625 42 1 0.1926 4.2017 6.4407 43 1 0.0967 3.8955 8.9094 44 1 1.7449 3.2242 8.8807 45 1 -1.1760 -1.5209 7.9896 46 1 0.8537 0.2270 6.8389 47 1 2.1651 0.9745 7.7846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597917930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:26 Heat of formation + Delta-G solvation = -60.551284 kcal Electronic energy + Delta-G solvation = -26805.835473 eV Core-core repulsion = 23146.290053 eV Total energy + Delta-G solvation = -3659.545421 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.49365 -39.34893 -37.50974 -36.48531 -34.16679 -33.46213 -31.86107 -30.38009 -30.06002 -29.41134 -28.02964 -25.08757 -24.40755 -23.90027 -22.33308 -21.85773 -21.09962 -19.86755 -18.33309 -18.18981 -16.81234 -16.25542 -16.11670 -15.98335 -15.73166 -14.97256 -14.58206 -14.46822 -14.28182 -13.80860 -13.74935 -13.66450 -13.35722 -13.07595 -12.94788 -12.66365 -12.43136 -12.18594 -12.06301 -11.90448 -11.81132 -11.58096 -11.10098 -11.04031 -10.93666 -10.79156 -10.70701 -10.56008 -10.46195 -10.27085 -9.94416 -9.32178 -9.15798 -8.96647 -8.91920 -8.45691 -8.19131 -7.82944 -6.01416 -4.10814 1.19893 1.34239 2.82223 3.09759 3.31177 3.37338 3.38311 3.64192 3.89410 4.41371 4.59519 4.66291 4.79419 4.90811 4.95243 5.09937 5.13550 5.19864 5.21315 5.28486 5.38148 5.41310 5.46050 5.50994 5.57577 5.62147 5.88216 5.90355 5.98088 6.08493 6.10535 6.24526 6.24751 6.36320 6.36704 6.47518 6.53775 6.60461 6.67736 6.79526 6.92184 7.07112 7.19633 7.36689 7.60120 7.83017 7.95487 8.15585 8.35429 8.76054 8.93216 9.55086 11.03761 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019219 B = 0.003108 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.510414 B = 9008.052551 C =10209.369180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.078 4.078 3 C -0.110 4.110 4 C -0.082 4.082 5 C -0.161 4.161 6 C -0.086 4.086 7 C -0.210 4.210 8 C 0.135 3.865 9 O -0.282 6.282 10 C 0.042 3.958 11 C 0.507 3.493 12 O -0.513 6.513 13 N -0.603 5.603 14 C 0.106 3.894 15 C -0.134 4.134 16 C -0.111 4.111 17 C 0.041 3.959 18 H 0.029 0.971 19 C -0.523 4.523 20 H 0.058 0.942 21 C 0.063 3.937 22 N -0.880 5.880 23 Si 0.893 3.107 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 C 0.114 3.886 28 H 0.060 0.940 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.265 0.735 46 H 0.124 0.876 47 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.187 9.993 -15.909 20.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.110 4.110 4 C -0.100 4.100 5 C -0.179 4.179 6 C -0.104 4.104 7 C -0.229 4.229 8 C 0.089 3.911 9 O -0.194 6.194 10 C -0.037 4.037 11 C 0.292 3.708 12 O -0.387 6.387 13 N -0.338 5.338 14 C -0.017 4.017 15 C -0.173 4.173 16 C -0.149 4.149 17 C 0.021 3.979 18 H 0.047 0.953 19 C -0.562 4.562 20 H 0.076 0.924 21 C -0.140 4.140 22 N -0.517 5.517 23 Si 0.721 3.279 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.202 1.202 27 C -0.006 4.006 28 H 0.079 0.921 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.144 0.856 34 H 0.139 0.861 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.105 0.895 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.142 0.858 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 7.821 8.973 -16.027 19.963 hybrid contribution -0.061 0.001 0.966 0.968 sum 7.759 8.974 -15.061 19.172 Atomic orbital electron populations 1.21693 0.94657 1.01807 1.01930 1.20388 0.96395 0.91839 1.02884 1.19319 1.03987 0.97436 0.90303 1.20874 0.97695 0.94801 0.96654 1.21001 1.03631 0.95238 0.98017 1.20894 0.98139 0.99457 0.91914 1.21269 1.07068 0.94932 0.99639 1.18959 0.94944 0.91305 0.85928 1.86202 1.81181 1.40266 1.11736 1.22648 1.02103 0.94927 0.84047 1.19803 0.79784 0.87619 0.83591 1.90760 1.44976 1.18239 1.84753 1.48455 1.64456 1.14172 1.06731 1.21691 0.97624 0.82811 0.99589 1.21955 0.98705 0.98026 0.98574 1.21629 1.00325 0.98246 0.94663 1.18972 0.93747 0.89749 0.95390 0.95278 1.21026 1.43094 1.00058 0.92007 0.92371 1.25060 0.95171 0.97652 0.96129 1.69869 1.43384 1.15054 1.23361 0.86644 0.78685 0.79002 0.83591 1.20276 1.21228 1.20243 1.22358 0.97337 0.97927 0.82946 0.92066 0.93199 0.92416 0.91479 0.90164 0.85570 0.86121 0.85971 0.85497 0.89533 0.89680 0.91612 0.91575 0.92058 0.92069 0.92899 0.93092 0.92507 0.85846 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 9.89 37.16 0.37 -1.41 16 2 C -0.08 -0.96 5.78 -27.88 -0.16 -1.12 16 3 C -0.11 -1.39 5.15 -104.47 -0.54 -1.93 16 4 C -0.08 -0.85 9.68 -39.60 -0.38 -1.23 16 5 C -0.16 -1.52 10.04 -39.56 -0.40 -1.92 16 6 C -0.09 -0.84 10.04 -39.60 -0.40 -1.24 16 7 C -0.21 -2.39 9.04 -39.43 -0.36 -2.75 16 8 C 0.13 1.86 6.66 -39.22 -0.26 1.60 16 9 O -0.28 -4.62 8.81 -39.33 -0.35 -4.96 16 10 C 0.04 0.61 3.57 36.01 0.13 0.74 16 11 C 0.51 10.11 7.78 -10.98 -0.09 10.02 16 12 O -0.51 -12.80 15.91 -14.35 -0.23 -13.03 16 13 N -0.60 -11.69 2.97 -172.74 -0.51 -12.21 16 14 C 0.11 1.53 6.34 -3.71 -0.02 1.51 16 15 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 16 C -0.11 -2.12 5.11 -26.69 -0.14 -2.26 16 17 C 0.04 0.98 2.25 -91.63 -0.21 0.77 16 18 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 19 C -0.52 -13.99 8.57 -34.44 -0.29 -14.29 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 22 N -0.88 -25.57 11.39 55.43 0.63 -24.94 16 23 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 27 C 0.11 2.71 5.40 -3.69 -0.02 2.69 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.67 8.05 -51.93 -0.42 0.26 16 32 H 0.08 1.15 7.69 -51.93 -0.40 0.76 16 33 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 35 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 1.21 6.30 -52.49 -0.33 0.88 16 37 H 0.09 1.08 7.21 -51.93 -0.37 0.70 16 38 H 0.09 1.00 7.46 -51.93 -0.39 0.61 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.72 5.93 -51.93 -0.31 0.41 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 46 H 0.12 3.47 5.12 -51.93 -0.27 3.21 16 47 H 0.04 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 376.04 15.07 5.67 5.67 Total: -1.00 -32.13 376.04 -10.35 -42.49 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -7.52 Total: 2.20 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -3.02 Total: -11.35 kcal Atomic # 7 Polarization: -37.27 SS G_CDS: 0.12 Total: -37.15 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.57 Total: -17.99 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.13 -10.35 -42.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597917930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.063 kcal (2) G-P(sol) polarization free energy of solvation -32.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds