Wall clock time and date at job start Tue Mar 31 2020 12:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50700 * 109.47494 * 2 1 4 4 C 1.38168 * 120.02815 * 265.32484 * 3 2 1 5 5 C 1.38248 * 120.05602 * 180.29469 * 4 3 2 6 6 C 1.38287 * 120.10781 * 359.67679 * 5 4 3 7 7 C 1.38129 * 120.05845 * 0.02562 * 6 5 4 8 8 C 1.38708 * 120.02671 * 85.00178 * 3 2 1 9 9 O 1.35898 * 120.05588 * 359.97438 * 8 3 2 10 10 C 1.42904 * 116.99765 * 179.72855 * 9 8 3 11 11 C 1.50705 * 109.46768 * 180.02562 * 10 9 8 12 12 O 1.21277 * 120.00344 * 359.97438 * 11 10 9 13 13 N 1.34779 * 119.99819 * 179.97438 * 11 10 9 14 14 C 1.46926 * 120.63044 * 359.97438 * 13 11 10 15 15 C 1.53192 * 108.77820 * 126.36870 * 14 13 11 16 16 C 1.53043 * 109.30860 * 54.63429 * 15 14 13 17 17 C 1.53037 * 109.53919 * 298.63563 * 16 15 14 18 18 H 1.08997 * 109.49928 * 301.41588 * 17 16 15 19 19 C 1.50701 * 109.52364 * 181.33412 * 17 16 15 20 20 H 1.07996 * 120.00165 * 0.15112 * 19 17 16 21 21 C 1.37881 * 119.99606 * 180.14200 * 19 17 16 22 22 N 1.31509 * 120.00180 * 0.02562 * 21 19 17 23 23 Si 1.86803 * 119.99401 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.46938 * 60.00654 * 23 21 19 25 25 H 1.48503 * 109.46654 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47625 * 300.00326 * 23 21 19 27 27 C 1.46925 * 120.63041 * 179.97438 * 13 11 10 28 28 H 1.09007 * 109.46862 * 299.99880 * 1 2 3 29 29 H 1.08997 * 109.47672 * 59.99719 * 1 2 3 30 30 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46862 * 240.00120 * 2 1 3 32 32 H 1.08997 * 109.47672 * 120.00281 * 2 1 3 33 33 H 1.08001 * 119.97362 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.94545 * 179.70011 * 5 4 3 35 35 H 1.07999 * 119.97133 * 180.02562 * 6 5 4 36 36 H 1.07999 * 120.02574 * 180.02562 * 7 6 5 37 37 H 1.08996 * 109.47077 * 60.00021 * 10 9 8 38 38 H 1.09003 * 109.47036 * 299.99951 * 10 9 8 39 39 H 1.09006 * 109.58406 * 246.15786 * 14 13 11 40 40 H 1.09002 * 109.59019 * 6.57775 * 14 13 11 41 41 H 1.09001 * 109.49595 * 174.58602 * 15 14 13 42 42 H 1.09000 * 109.49611 * 294.68450 * 15 14 13 43 43 H 1.08997 * 109.45405 * 178.61356 * 16 15 14 44 44 H 1.09002 * 109.44862 * 58.64978 * 16 15 14 45 45 H 0.97007 * 119.99876 * 179.97438 * 22 21 19 46 46 H 1.08998 * 109.58340 * 353.41744 * 27 13 11 47 47 H 1.09003 * 109.58494 * 113.70309 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3548 2.0401 -1.1923 5 6 2.8216 3.3414 -1.1924 6 6 2.9606 4.0287 -0.0005 7 6 2.6338 3.4160 1.1936 8 6 2.1652 2.1100 1.1964 9 8 1.8419 1.5054 2.3697 10 6 2.0094 2.2736 3.5630 11 6 1.6047 1.4448 4.7549 12 8 1.2113 0.3084 4.5978 13 7 1.6801 1.9664 5.9953 14 6 2.1553 3.3413 6.2016 15 6 1.1108 4.1065 7.0204 16 6 0.8214 3.3408 8.3135 17 6 0.2534 1.9606 7.9749 18 1 -0.6566 2.0761 7.3863 19 6 -0.0620 1.2195 9.2486 20 1 0.1215 1.6867 10.2048 21 6 -0.5851 -0.0550 9.1931 22 7 -0.8083 -0.6241 8.0287 23 14 -0.9755 -0.9739 10.7719 24 1 -1.9783 -0.2083 11.5552 25 1 -1.5228 -2.3144 10.4420 26 1 0.2647 -1.1297 11.5736 27 6 1.2887 1.1710 7.1670 28 1 -0.3633 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 2.2471 1.5055 -2.1244 34 1 3.0777 3.8222 -2.1250 35 1 3.3250 5.0453 -0.0032 36 1 2.7422 3.9534 2.1241 37 1 1.3851 3.1656 3.5115 38 1 3.0545 2.5668 3.6628 39 1 3.1018 3.3236 6.7419 40 1 2.2922 3.8294 5.2366 41 1 1.4934 5.0980 7.2625 42 1 0.1926 4.2017 6.4407 43 1 0.0967 3.8955 8.9094 44 1 1.7449 3.2242 8.8807 45 1 -1.1760 -1.5209 7.9896 46 1 0.8537 0.2270 6.8389 47 1 2.1651 0.9745 7.7846 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597917930.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:24 Heat of formation + Delta-G solvation = -78.276382 kcal Electronic energy + Delta-G solvation = -26806.604091 eV Core-core repulsion = 23146.290053 eV Total energy + Delta-G solvation = -3660.314039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.58656 -40.70510 -38.68417 -37.94973 -35.36662 -35.04646 -33.53968 -31.78213 -31.10825 -30.49871 -29.21340 -26.95661 -25.90633 -24.82329 -23.53277 -23.18607 -22.01634 -21.43662 -19.82565 -19.19860 -18.54304 -17.72026 -17.39570 -17.21935 -16.64140 -16.58416 -16.17970 -15.69472 -15.32727 -15.21390 -14.96061 -14.69962 -14.63452 -14.47261 -14.27990 -14.02511 -13.80692 -13.54851 -13.45926 -13.01111 -12.86861 -12.74686 -12.72778 -12.40769 -12.30514 -12.27403 -12.06214 -11.83616 -11.77008 -11.64985 -11.58609 -11.14013 -10.96509 -10.64959 -10.51617 -9.75249 -9.47611 -9.07492 -8.12427 -6.30050 0.41628 0.52009 1.39364 1.40716 1.49436 1.56546 1.63700 2.39939 2.62958 2.84809 3.15769 3.43540 3.78252 3.87874 3.94288 4.03232 4.07280 4.17274 4.18439 4.30508 4.33179 4.39452 4.49326 4.57480 4.59115 4.65287 4.71044 4.78561 4.79670 4.85189 4.96259 5.09238 5.09847 5.19619 5.24543 5.26876 5.33977 5.34454 5.46289 5.51730 5.56903 5.60661 5.64753 5.87493 5.91546 5.98257 6.30570 6.41671 6.59322 6.83350 7.23130 7.40650 8.90475 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019219 B = 0.003108 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.510414 B = 9008.052551 C =10209.369180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.076 4.076 3 C -0.133 4.133 4 C -0.084 4.084 5 C -0.157 4.157 6 C -0.086 4.086 7 C -0.214 4.214 8 C 0.101 3.899 9 O -0.318 6.318 10 C 0.055 3.945 11 C 0.495 3.505 12 O -0.581 6.581 13 N -0.605 5.605 14 C 0.098 3.902 15 C -0.127 4.127 16 C -0.106 4.106 17 C 0.039 3.961 18 H -0.015 1.015 19 C -0.537 4.537 20 H 0.064 0.936 21 C 0.008 3.992 22 N -0.916 5.916 23 Si 0.958 3.042 24 H -0.267 1.267 25 H -0.291 1.291 26 H -0.266 1.266 27 C 0.126 3.874 28 H 0.028 0.972 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.147 0.853 37 H 0.116 0.884 38 H 0.123 0.877 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.059 0.941 45 H 0.259 0.741 46 H 0.073 0.927 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.208 13.645 -17.170 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C -0.133 4.133 4 C -0.102 4.102 5 C -0.175 4.175 6 C -0.104 4.104 7 C -0.232 4.232 8 C 0.056 3.944 9 O -0.232 6.232 10 C -0.023 4.023 11 C 0.283 3.717 12 O -0.461 6.461 13 N -0.338 5.338 14 C -0.023 4.023 15 C -0.165 4.165 16 C -0.144 4.144 17 C 0.020 3.980 18 H 0.003 0.997 19 C -0.575 4.575 20 H 0.082 0.918 21 C -0.191 4.191 22 N -0.555 5.555 23 Si 0.783 3.217 24 H -0.192 1.192 25 H -0.216 1.216 26 H -0.191 1.191 27 C 0.004 3.996 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.166 0.834 34 H 0.169 0.831 35 H 0.171 0.829 36 H 0.165 0.835 37 H 0.133 0.867 38 H 0.141 0.859 39 H 0.106 0.894 40 H 0.131 0.869 41 H 0.127 0.873 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.091 0.909 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.867 12.698 -17.279 23.604 hybrid contribution -0.677 -1.085 1.288 1.815 sum 9.190 11.613 -15.990 21.795 Atomic orbital electron populations 1.21652 0.95031 1.01768 1.01201 1.20342 0.96101 0.92536 1.02359 1.19524 1.05166 0.97430 0.91210 1.21169 0.97025 0.95523 0.96492 1.21433 1.01954 0.94706 0.99363 1.21318 0.97025 1.00749 0.91274 1.21543 1.06433 0.93861 1.01381 1.19293 0.97124 0.92820 0.85123 1.86155 1.82322 1.41806 1.12895 1.22580 1.04513 0.93749 0.81454 1.20859 0.78386 0.87372 0.85077 1.90724 1.47974 1.21511 1.85858 1.48460 1.63875 1.15969 1.05484 1.22146 0.97932 0.79706 1.02495 1.21931 0.98890 0.99656 0.96056 1.21524 1.00211 0.95408 0.97263 1.18906 0.92378 0.92929 0.93832 0.99679 1.21513 1.42361 1.00346 0.93306 0.91821 1.25922 0.95276 0.98820 0.99090 1.70091 1.44671 1.15009 1.25704 0.85617 0.78895 0.77401 0.79813 1.19214 1.21643 1.19099 1.21735 0.96638 0.96791 0.84468 0.95271 0.91218 0.92168 0.89078 0.93472 0.83377 0.83143 0.82879 0.83518 0.86689 0.85922 0.89450 0.86864 0.87306 0.93001 0.92962 0.92249 0.93206 0.90876 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.89 71.98 0.71 -2.90 16 2 C -0.08 -1.95 5.78 29.85 0.17 -1.78 16 3 C -0.13 -3.29 5.15 -19.77 -0.10 -3.39 16 4 C -0.08 -1.53 9.68 22.26 0.22 -1.32 16 5 C -0.16 -2.34 10.04 22.28 0.22 -2.12 16 6 C -0.09 -1.31 10.04 22.26 0.22 -1.09 16 7 C -0.21 -4.21 9.04 22.37 0.20 -4.00 16 8 C 0.10 2.72 6.66 22.51 0.15 2.87 16 9 O -0.32 -10.69 8.81 -73.37 -0.65 -11.34 16 10 C 0.05 1.54 3.57 71.24 0.25 1.80 16 11 C 0.50 20.40 7.78 87.66 0.68 21.08 16 12 O -0.58 -31.49 15.91 16.02 0.25 -31.23 16 13 N -0.60 -23.61 2.97 -818.82 -2.43 -26.05 16 14 C 0.10 2.50 6.34 86.36 0.55 3.05 16 15 C -0.13 -3.44 6.08 30.67 0.19 -3.25 16 16 C -0.11 -3.96 5.11 30.62 0.16 -3.80 16 17 C 0.04 1.95 2.25 -11.45 -0.03 1.92 16 18 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 19 C -0.54 -29.63 8.57 25.60 0.22 -29.41 16 20 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 21 C 0.01 0.47 5.30 84.66 0.45 0.92 16 22 N -0.92 -56.81 11.39 21.45 0.24 -56.57 16 23 Si 0.96 44.71 29.54 68.60 2.03 46.74 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.29 -13.64 7.11 99.48 0.71 -12.93 16 26 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 27 C 0.13 6.29 5.40 86.37 0.47 6.76 16 28 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.09 1.80 8.05 -2.38 -0.02 1.78 16 32 H 0.05 1.49 7.69 -2.39 -0.02 1.47 16 33 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 34 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 36 H 0.15 2.15 6.30 -2.91 -0.02 2.13 16 37 H 0.12 2.53 7.21 -2.39 -0.02 2.51 16 38 H 0.12 2.47 7.46 -2.39 -0.02 2.46 16 39 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.11 1.86 5.93 -2.39 -0.01 1.85 16 41 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.26 15.58 8.31 -92.70 -0.77 14.81 16 46 H 0.07 4.46 5.12 -2.39 -0.01 4.45 16 47 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -79.99 376.04 5.12 -74.86 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.95 Total: 18.25 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 4.73 Total: -14.66 kcal Atomic # 7 Polarization: -80.42 SS G_CDS: -2.19 Total: -82.61 kcal Atomic # 8 Polarization: -42.18 SS G_CDS: -0.39 Total: -42.58 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -79.99 5.12 -74.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597917930.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.416 kcal (2) G-P(sol) polarization free energy of solvation -79.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds