Wall clock time and date at job start Tue Mar 31 2020 12:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47349 * 2 1 4 4 C 1.38283 * 119.97377 * 270.02373 * 3 2 1 5 5 C 1.38245 * 120.11207 * 179.97438 * 4 3 2 6 6 C 1.38167 * 120.05805 * 359.75811 * 5 4 3 7 7 C 1.38711 * 119.93867 * 0.49397 * 6 5 4 8 8 O 1.35900 * 120.05316 * 179.76712 * 7 6 5 9 9 C 1.42901 * 117.00039 * 359.71954 * 8 7 6 10 10 C 1.50704 * 109.47156 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99975 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99817 * 180.02562 * 10 9 8 13 13 C 1.46925 * 120.63430 * 359.72257 * 12 10 9 14 14 C 1.52765 * 109.00825 * 233.58522 * 13 12 10 15 15 C 1.53041 * 109.38100 * 305.58699 * 14 13 12 16 16 C 1.53036 * 109.54114 * 61.23890 * 15 14 13 17 17 H 1.09004 * 109.49460 * 58.58584 * 16 15 14 18 18 C 1.50696 * 109.49878 * 178.68403 * 16 15 14 19 19 H 1.08004 * 119.99977 * 5.25649 * 18 16 15 20 20 C 1.37877 * 120.00040 * 185.26628 * 18 16 15 21 21 N 1.31505 * 120.00102 * 9.53926 * 20 18 16 22 22 Si 1.86809 * 119.99833 * 189.54387 * 20 18 16 23 23 H 1.48499 * 109.46982 * 94.98819 * 22 20 18 24 24 H 1.48494 * 109.46706 * 214.98608 * 22 20 18 25 25 H 1.48494 * 109.46968 * 334.98438 * 22 20 18 26 26 C 1.46927 * 120.62835 * 179.97438 * 12 10 9 27 27 C 1.38132 * 119.97162 * 89.99575 * 3 2 1 28 28 H 1.09000 * 109.46853 * 59.99729 * 1 2 3 29 29 H 1.08997 * 109.47276 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47095 * 300.00371 * 1 2 3 31 31 H 1.08992 * 109.47308 * 239.99879 * 2 1 3 32 32 H 1.09001 * 109.46902 * 119.99718 * 2 1 3 33 33 H 1.07998 * 119.94535 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.97035 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.03153 * 180.25521 * 6 5 4 36 36 H 1.08994 * 109.47176 * 300.00430 * 9 8 7 37 37 H 1.09003 * 109.47118 * 60.00656 * 9 8 7 38 38 H 1.08999 * 109.58365 * 353.41449 * 13 12 10 39 39 H 1.08997 * 109.58905 * 113.84446 * 13 12 10 40 40 H 1.09001 * 109.56148 * 185.54787 * 14 13 12 41 41 H 1.09003 * 109.38774 * 65.51097 * 14 13 12 42 42 H 1.09003 * 109.45484 * 301.21736 * 15 14 13 43 43 H 1.09002 * 109.44589 * 181.25504 * 15 14 13 44 44 H 0.97007 * 120.00390 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.59016 * 246.15681 * 26 12 10 46 46 H 1.08997 * 109.58924 * 6.58661 * 26 12 10 47 47 H 1.07997 * 120.02570 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0723 -1.1979 5 6 2.7226 3.3758 -1.2012 6 6 2.9495 4.0327 -0.0070 7 6 2.7247 3.3796 1.1959 8 8 2.9516 4.0219 2.3718 9 6 3.4272 5.3673 2.2950 10 6 3.6203 5.9121 3.6867 11 8 3.3752 5.2166 4.6496 12 7 4.0652 7.1722 3.8613 13 6 4.3721 8.0248 2.7048 14 6 5.7948 8.5629 2.8469 15 6 5.9403 9.2625 4.2003 16 6 5.6876 8.2572 5.3260 17 1 6.3956 7.4325 5.2430 18 6 5.8628 8.9393 6.6583 19 1 6.0440 10.0032 6.7006 20 6 5.7919 8.2052 7.8232 21 7 5.7600 6.8915 7.7717 22 14 5.7412 9.0767 9.4748 23 1 4.3295 9.2362 9.9071 24 1 6.4794 8.2727 10.4816 25 1 6.3744 10.4140 9.3484 26 6 4.2579 7.7176 5.2119 27 6 2.2624 2.0714 1.1966 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0818 1.5619 -2.1324 34 1 2.9009 3.8826 -2.1381 35 1 3.3052 5.0524 -0.0102 36 1 4.3779 5.3867 1.7624 37 1 2.6998 5.9799 1.7623 38 1 4.2942 7.4396 1.7886 39 1 3.6710 8.8585 2.6691 40 1 5.9978 9.2739 2.0460 41 1 6.5022 7.7358 2.7871 42 1 5.2161 10.0744 4.2690 43 1 6.9485 9.6663 4.2935 44 1 5.7105 6.3750 8.5914 45 1 3.5472 8.5258 5.3845 46 1 4.1047 6.9298 5.9495 47 1 2.0827 1.5621 2.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597918552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:39 Heat of formation + Delta-G solvation = -62.975106 kcal Electronic energy + Delta-G solvation = -26219.833591 eV Core-core repulsion = 22560.183066 eV Total energy + Delta-G solvation = -3659.650526 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.44388 -39.39785 -37.80532 -36.59025 -34.01014 -33.46149 -31.87838 -30.87461 -30.03437 -29.29796 -28.13952 -25.08235 -24.57625 -23.87037 -22.62933 -21.93060 -21.09775 -19.81090 -18.43015 -18.03749 -16.78500 -16.25820 -16.25342 -16.12459 -15.77536 -15.05826 -14.73775 -14.57560 -14.25751 -14.01754 -13.80466 -13.67872 -13.35409 -13.21828 -13.09082 -12.69306 -12.50722 -12.37047 -12.11165 -11.98627 -11.90089 -11.58934 -11.23765 -11.06106 -11.02510 -10.96641 -10.86491 -10.58842 -10.45357 -10.29726 -9.95697 -9.40235 -9.11553 -8.96779 -8.96054 -8.42185 -8.28363 -7.87990 -6.04303 -4.09417 1.16459 1.33230 2.77990 3.05414 3.30599 3.38483 3.40048 3.61006 3.84004 4.42108 4.51716 4.59131 4.76156 4.80766 4.92074 4.99902 5.07505 5.09181 5.14119 5.18156 5.27020 5.27701 5.39909 5.40644 5.44012 5.57019 5.65545 5.72489 5.88220 5.90596 5.96582 6.07721 6.19139 6.23873 6.27783 6.44532 6.51575 6.56342 6.63181 6.77085 6.90139 7.01483 7.10900 7.34951 7.56395 7.80971 7.93313 8.06232 8.34552 8.71303 8.95083 9.55336 11.03556 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.002611 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.875899 B =10720.158157 C =11727.002703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.044 4.044 4 C -0.161 4.161 5 C -0.077 4.077 6 C -0.218 4.218 7 C 0.138 3.862 8 O -0.287 6.287 9 C 0.043 3.957 10 C 0.508 3.492 11 O -0.515 6.515 12 N -0.603 5.603 13 C 0.108 3.892 14 C -0.135 4.135 15 C -0.110 4.110 16 C 0.038 3.962 17 H 0.036 0.964 18 C -0.524 4.524 19 H 0.059 0.941 20 C 0.065 3.935 21 N -0.877 5.877 22 Si 0.889 3.111 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.274 1.274 26 C 0.119 3.881 27 C -0.149 4.149 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.264 0.736 45 H 0.048 0.952 46 H 0.106 0.894 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.240 -6.989 -20.471 22.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.123 4.123 3 C -0.045 4.045 4 C -0.180 4.180 5 C -0.095 4.095 6 C -0.236 4.236 7 C 0.092 3.908 8 O -0.199 6.199 9 C -0.036 4.036 10 C 0.293 3.707 11 O -0.390 6.390 12 N -0.338 5.338 13 C -0.016 4.016 14 C -0.174 4.174 15 C -0.148 4.148 16 C 0.019 3.981 17 H 0.055 0.945 18 C -0.563 4.563 19 H 0.077 0.923 20 C -0.138 4.138 21 N -0.513 5.513 22 Si 0.716 3.284 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.001 4.001 27 C -0.168 4.168 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.124 0.876 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -7.413 -7.602 -19.606 22.296 hybrid contribution 0.117 0.771 0.655 1.018 sum -7.296 -6.832 -18.951 21.425 Atomic orbital electron populations 1.21748 0.94534 1.01753 1.02406 1.20562 0.96328 0.92310 1.03074 1.19672 0.96655 0.95909 0.92219 1.20886 1.04245 0.95426 0.97410 1.20891 0.96863 0.94470 0.97269 1.21267 1.08789 1.01302 0.92272 1.19106 0.94715 0.92288 0.84691 1.86202 1.80215 1.26160 1.27309 1.22634 1.00470 0.82499 0.97965 1.19828 0.78968 0.82395 0.89556 1.90757 1.49574 1.57067 1.41596 1.48414 1.64310 1.11695 1.09343 1.21604 0.97549 0.94538 0.87894 1.21893 0.95747 1.00350 0.99373 1.21624 1.00725 0.98837 0.93607 1.18994 0.92083 0.94302 0.92722 0.94541 1.21026 1.50591 0.94561 0.90108 0.92294 1.25050 0.94756 0.94741 0.99286 1.69975 1.48397 1.04658 1.28281 0.86635 0.78157 0.79661 0.83930 1.20593 1.21244 1.19866 1.22270 0.99320 0.98750 0.79777 1.20320 1.04972 0.92670 0.98804 0.92559 0.92337 0.92305 0.90849 0.90717 0.86152 0.85851 0.85503 0.89392 0.89542 0.91497 0.91561 0.91970 0.92020 0.93152 0.92768 0.92643 0.93415 0.87599 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 37.16 0.37 -0.70 16 2 C -0.09 -0.68 6.06 -27.88 -0.17 -0.85 16 3 C -0.04 -0.46 5.13 -104.65 -0.54 -1.00 16 4 C -0.16 -1.53 9.70 -39.56 -0.38 -1.92 16 5 C -0.08 -0.74 10.04 -39.61 -0.40 -1.14 16 6 C -0.22 -2.45 9.04 -39.43 -0.36 -2.81 16 7 C 0.14 1.91 6.69 -39.22 -0.26 1.65 16 8 O -0.29 -4.80 9.67 -39.34 -0.38 -5.18 16 9 C 0.04 0.63 3.57 36.01 0.13 0.76 16 10 C 0.51 10.14 7.78 -10.99 -0.09 10.06 16 11 O -0.52 -12.97 15.91 -14.35 -0.23 -13.20 16 12 N -0.60 -11.60 2.98 -173.01 -0.52 -12.12 16 13 C 0.11 1.53 6.31 -3.93 -0.02 1.50 16 14 C -0.14 -2.03 6.07 -26.83 -0.16 -2.20 16 15 C -0.11 -2.10 5.11 -26.69 -0.14 -2.24 16 16 C 0.04 0.92 2.11 -91.63 -0.19 0.73 16 17 H 0.04 1.00 8.09 -51.93 -0.42 0.58 16 18 C -0.52 -14.04 8.48 -34.44 -0.29 -14.33 16 19 H 0.06 1.54 7.77 -52.48 -0.41 1.14 16 20 C 0.07 1.81 5.24 -17.82 -0.09 1.72 16 21 N -0.88 -25.75 12.21 55.43 0.68 -25.07 16 22 Si 0.89 21.21 29.55 -169.99 -5.02 16.19 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C 0.12 2.79 5.49 -3.69 -0.02 2.77 16 27 C -0.15 -1.89 9.64 -39.43 -0.38 -2.27 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.07 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.13 1.19 6.30 -52.49 -0.33 0.86 16 36 H 0.09 1.09 7.21 -51.93 -0.37 0.72 16 37 H 0.09 1.01 7.46 -51.93 -0.39 0.62 16 38 H 0.07 0.72 5.93 -51.93 -0.31 0.41 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.11 2.96 5.93 -51.93 -0.31 2.65 16 47 H 0.13 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -32.82 378.60 -10.35 -43.16 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -7.58 Total: 0.77 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: -3.00 Total: -10.25 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: 0.16 Total: -37.19 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.61 Total: -18.38 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.82 -10.35 -43.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597918552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.811 kcal (2) G-P(sol) polarization free energy of solvation -32.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds