Wall clock time and date at job start Tue Mar 31 2020 12:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47349 * 2 1 4 4 C 1.38283 * 119.97377 * 270.02373 * 3 2 1 5 5 C 1.38245 * 120.11207 * 179.97438 * 4 3 2 6 6 C 1.38167 * 120.05805 * 359.75811 * 5 4 3 7 7 C 1.38711 * 119.93867 * 0.49397 * 6 5 4 8 8 O 1.35900 * 120.05316 * 179.76712 * 7 6 5 9 9 C 1.42901 * 117.00039 * 359.71954 * 8 7 6 10 10 C 1.50704 * 109.47156 * 180.02562 * 9 8 7 11 11 O 1.21278 * 119.99975 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99817 * 180.02562 * 10 9 8 13 13 C 1.46925 * 120.63430 * 359.72257 * 12 10 9 14 14 C 1.52765 * 109.00825 * 233.58522 * 13 12 10 15 15 C 1.53041 * 109.38100 * 305.58699 * 14 13 12 16 16 C 1.53036 * 109.54114 * 61.23890 * 15 14 13 17 17 H 1.09004 * 109.49460 * 58.58584 * 16 15 14 18 18 C 1.50696 * 109.49878 * 178.68403 * 16 15 14 19 19 H 1.08004 * 119.99977 * 5.25649 * 18 16 15 20 20 C 1.37877 * 120.00040 * 185.26628 * 18 16 15 21 21 N 1.31505 * 120.00102 * 9.53926 * 20 18 16 22 22 Si 1.86809 * 119.99833 * 189.54387 * 20 18 16 23 23 H 1.48499 * 109.46982 * 94.98819 * 22 20 18 24 24 H 1.48494 * 109.46706 * 214.98608 * 22 20 18 25 25 H 1.48494 * 109.46968 * 334.98438 * 22 20 18 26 26 C 1.46927 * 120.62835 * 179.97438 * 12 10 9 27 27 C 1.38132 * 119.97162 * 89.99575 * 3 2 1 28 28 H 1.09000 * 109.46853 * 59.99729 * 1 2 3 29 29 H 1.08997 * 109.47276 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47095 * 300.00371 * 1 2 3 31 31 H 1.08992 * 109.47308 * 239.99879 * 2 1 3 32 32 H 1.09001 * 109.46902 * 119.99718 * 2 1 3 33 33 H 1.07998 * 119.94535 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.97035 * 180.02562 * 5 4 3 35 35 H 1.07997 * 120.03153 * 180.25521 * 6 5 4 36 36 H 1.08994 * 109.47176 * 300.00430 * 9 8 7 37 37 H 1.09003 * 109.47118 * 60.00656 * 9 8 7 38 38 H 1.08999 * 109.58365 * 353.41449 * 13 12 10 39 39 H 1.08997 * 109.58905 * 113.84446 * 13 12 10 40 40 H 1.09001 * 109.56148 * 185.54787 * 14 13 12 41 41 H 1.09003 * 109.38774 * 65.51097 * 14 13 12 42 42 H 1.09003 * 109.45484 * 301.21736 * 15 14 13 43 43 H 1.09002 * 109.44589 * 181.25504 * 15 14 13 44 44 H 0.97007 * 120.00390 * 179.97438 * 21 20 18 45 45 H 1.08998 * 109.59016 * 246.15681 * 26 12 10 46 46 H 1.08997 * 109.58924 * 6.58661 * 26 12 10 47 47 H 1.07997 * 120.02570 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2622 2.0723 -1.1979 5 6 2.7226 3.3758 -1.2012 6 6 2.9495 4.0327 -0.0070 7 6 2.7247 3.3796 1.1959 8 8 2.9516 4.0219 2.3718 9 6 3.4272 5.3673 2.2950 10 6 3.6203 5.9121 3.6867 11 8 3.3752 5.2166 4.6496 12 7 4.0652 7.1722 3.8613 13 6 4.3721 8.0248 2.7048 14 6 5.7948 8.5629 2.8469 15 6 5.9403 9.2625 4.2003 16 6 5.6876 8.2572 5.3260 17 1 6.3956 7.4325 5.2430 18 6 5.8628 8.9393 6.6583 19 1 6.0440 10.0032 6.7006 20 6 5.7919 8.2052 7.8232 21 7 5.7600 6.8915 7.7717 22 14 5.7412 9.0767 9.4748 23 1 4.3295 9.2362 9.9071 24 1 6.4794 8.2727 10.4816 25 1 6.3744 10.4140 9.3484 26 6 4.2579 7.7176 5.2119 27 6 2.2624 2.0714 1.1966 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.0818 1.5619 -2.1324 34 1 2.9009 3.8826 -2.1381 35 1 3.3052 5.0524 -0.0102 36 1 4.3779 5.3867 1.7624 37 1 2.6998 5.9799 1.7623 38 1 4.2942 7.4396 1.7886 39 1 3.6710 8.8585 2.6691 40 1 5.9978 9.2739 2.0460 41 1 6.5022 7.7358 2.7871 42 1 5.2161 10.0744 4.2690 43 1 6.9485 9.6663 4.2935 44 1 5.7105 6.3750 8.5914 45 1 3.5472 8.5258 5.3845 46 1 4.1047 6.9298 5.9495 47 1 2.0827 1.5621 2.1319 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597918552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:38 Heat of formation + Delta-G solvation = -81.424209 kcal Electronic energy + Delta-G solvation = -26220.633604 eV Core-core repulsion = 22560.183066 eV Total energy + Delta-G solvation = -3660.450539 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.57580 -40.70211 -38.88836 -38.12927 -35.35359 -34.70643 -33.55798 -32.01520 -31.47208 -30.05385 -29.40144 -26.94651 -25.95801 -24.74103 -23.54161 -23.40570 -22.11132 -21.26444 -19.87756 -19.11348 -18.49721 -17.70974 -17.41185 -17.32891 -16.83231 -16.54346 -16.23829 -15.70501 -15.48722 -15.23187 -15.01124 -14.64717 -14.57387 -14.41539 -14.23692 -14.08156 -13.90159 -13.60661 -13.53375 -13.03626 -12.89367 -12.78029 -12.72769 -12.36868 -12.34507 -12.24186 -11.95275 -11.85813 -11.82046 -11.65740 -11.62371 -11.23251 -10.89841 -10.65531 -10.54103 -9.75774 -9.51332 -9.16718 -8.17420 -6.29389 0.37325 0.49188 1.37443 1.39748 1.50025 1.52076 1.59646 2.39355 2.58170 2.80545 3.14241 3.40174 3.79358 3.85707 3.95732 4.02524 4.07133 4.14655 4.18397 4.25712 4.32593 4.40931 4.49772 4.52907 4.57989 4.66497 4.70679 4.76346 4.77855 4.83730 5.07749 5.08815 5.10061 5.14783 5.18578 5.27305 5.30508 5.35892 5.38865 5.50381 5.51447 5.59467 5.68267 5.84849 5.87933 5.91539 6.30039 6.38140 6.54694 6.85014 7.18632 7.39967 8.89746 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022201 B = 0.002611 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.875899 B =10720.158157 C =11727.002703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.048 4.048 4 C -0.159 4.159 5 C -0.074 4.074 6 C -0.219 4.219 7 C 0.107 3.893 8 O -0.327 6.327 9 C 0.056 3.944 10 C 0.495 3.505 11 O -0.586 6.586 12 N -0.603 5.603 13 C 0.099 3.901 14 C -0.129 4.129 15 C -0.106 4.106 16 C 0.037 3.963 17 H -0.011 1.011 18 C -0.535 4.535 19 H 0.065 0.935 20 C 0.010 3.990 21 N -0.918 5.918 22 Si 0.954 3.046 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.258 1.258 26 C 0.131 3.869 27 C -0.176 4.176 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.050 0.950 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.259 0.741 45 H 0.050 0.950 46 H 0.051 0.949 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.582 -5.405 -24.820 26.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.123 4.123 3 C -0.048 4.048 4 C -0.177 4.177 5 C -0.092 4.092 6 C -0.237 4.237 7 C 0.062 3.938 8 O -0.241 6.241 9 C -0.022 4.022 10 C 0.283 3.717 11 O -0.466 6.466 12 N -0.336 5.336 13 C -0.022 4.022 14 C -0.166 4.166 15 C -0.144 4.144 16 C 0.017 3.983 17 H 0.007 0.993 18 C -0.573 4.573 19 H 0.083 0.917 20 C -0.190 4.190 21 N -0.556 5.556 22 Si 0.779 3.221 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.182 1.182 26 C 0.008 3.992 27 C -0.195 4.195 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.087 0.913 33 H 0.167 0.833 34 H 0.176 0.824 35 H 0.168 0.832 36 H 0.136 0.864 37 H 0.145 0.855 38 H 0.133 0.867 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -7.742 -5.973 -24.015 25.929 hybrid contribution 0.228 0.240 1.933 1.962 sum -7.514 -5.732 -22.082 24.019 Atomic orbital electron populations 1.21731 0.94009 1.02572 1.01887 1.20629 0.96721 0.91115 1.03828 1.19957 0.96118 0.96905 0.91799 1.21301 1.02785 0.95662 0.97938 1.21333 0.95396 0.94472 0.97992 1.21547 1.08286 1.02322 0.91575 1.19382 0.96811 0.92797 0.84784 1.86139 1.81213 1.27122 1.29616 1.22605 1.03120 0.82516 0.93922 1.20901 0.77473 0.81955 0.91369 1.90720 1.52552 1.58885 1.44406 1.48431 1.63639 1.12334 1.09217 1.22080 0.97480 0.95274 0.87358 1.21869 0.96072 1.00686 0.98016 1.21521 1.00835 0.97875 0.94124 1.18922 0.91179 0.94026 0.94136 0.99274 1.21512 1.49375 0.94871 0.91578 0.91730 1.25909 0.94651 0.95211 1.03217 1.70156 1.50285 1.06423 1.28749 0.85606 0.78145 0.78986 0.79367 1.20314 1.21450 1.18210 1.21668 0.98924 0.96943 0.81623 1.20460 1.06569 0.93113 0.99324 0.91939 0.90880 0.93923 0.88794 0.91266 0.83301 0.82450 0.83196 0.86382 0.85512 0.86720 0.89124 0.87168 0.93124 0.92014 0.93057 0.93228 0.93189 0.93004 0.86848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 9.89 71.98 0.71 -1.22 16 2 C -0.09 -1.25 6.06 29.85 0.18 -1.07 16 3 C -0.05 -0.93 5.13 -19.88 -0.10 -1.04 16 4 C -0.16 -2.49 9.70 22.28 0.22 -2.28 16 5 C -0.07 -1.13 10.04 22.25 0.22 -0.90 16 6 C -0.22 -4.26 9.04 22.37 0.20 -4.06 16 7 C 0.11 2.93 6.69 22.51 0.15 3.08 16 8 O -0.33 -11.19 9.67 -73.39 -0.71 -11.90 16 9 C 0.06 1.56 3.57 71.24 0.25 1.81 16 10 C 0.50 20.27 7.78 87.66 0.68 20.95 16 11 O -0.59 -31.81 15.91 16.01 0.25 -31.55 16 12 N -0.60 -23.16 2.98 -819.66 -2.44 -25.60 16 13 C 0.10 2.43 6.31 86.22 0.54 2.98 16 14 C -0.13 -3.41 6.07 30.53 0.19 -3.23 16 15 C -0.11 -3.90 5.11 30.62 0.16 -3.74 16 16 C 0.04 1.83 2.11 -11.45 -0.02 1.81 16 17 H -0.01 -0.65 8.09 -2.38 -0.02 -0.66 16 18 C -0.53 -29.48 8.48 25.60 0.22 -29.26 16 19 H 0.06 3.40 7.77 -2.91 -0.02 3.38 16 20 C 0.01 0.56 5.24 84.66 0.44 1.00 16 21 N -0.92 -57.39 12.21 21.45 0.26 -57.13 16 22 Si 0.95 44.84 29.55 68.60 2.03 46.87 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 26 C 0.13 6.43 5.49 86.38 0.47 6.91 16 27 C -0.18 -4.61 9.64 22.37 0.22 -4.40 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.04 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.09 0.99 8.08 -2.39 -0.02 0.97 16 32 H 0.07 1.07 8.08 -2.39 -0.02 1.05 16 33 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.16 1.32 8.06 -2.91 -0.02 1.30 16 35 H 0.15 2.09 6.30 -2.91 -0.02 2.07 16 36 H 0.12 2.53 7.21 -2.39 -0.02 2.51 16 37 H 0.13 2.45 7.46 -2.39 -0.02 2.44 16 38 H 0.11 1.78 5.93 -2.39 -0.01 1.77 16 39 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.26 15.62 8.31 -92.70 -0.77 14.85 16 45 H 0.05 2.37 8.14 -2.39 -0.02 2.35 16 46 H 0.05 3.13 5.93 -2.39 -0.01 3.11 16 47 H 0.11 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -81.54 378.60 5.07 -76.48 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: 0.94 Total: 15.49 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: 4.73 Total: -12.65 kcal Atomic # 7 Polarization: -80.55 SS G_CDS: -2.18 Total: -82.73 kcal Atomic # 8 Polarization: -43.00 SS G_CDS: -0.45 Total: -43.46 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -81.54 5.07 -76.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597918552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.947 kcal (2) G-P(sol) polarization free energy of solvation -81.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds