Wall clock time and date at job start Tue Mar 31 2020 12:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47273 * 2 1 4 4 C 1.38295 * 119.97331 * 270.02298 * 3 2 1 5 5 C 1.38241 * 120.11244 * 180.02562 * 4 3 2 6 6 C 1.38163 * 120.05586 * 359.68398 * 5 4 3 7 7 C 1.38714 * 119.94318 * 0.57212 * 6 5 4 8 8 O 1.35903 * 120.05632 * 179.72468 * 7 6 5 9 9 C 1.42905 * 116.99803 * 359.72357 * 8 7 6 10 10 C 1.50696 * 109.46808 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00306 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00030 * 179.97438 * 10 9 8 13 13 C 1.47207 * 120.81118 * 0.14238 * 12 10 9 14 14 C 1.53195 * 108.85456 * 126.33789 * 13 12 10 15 15 C 1.53038 * 109.31078 * 54.64814 * 14 13 12 16 16 C 1.53035 * 109.54175 * 298.63655 * 15 14 13 17 17 H 1.09003 * 109.49576 * 301.41349 * 16 15 14 18 18 C 1.50708 * 109.52628 * 181.33267 * 16 15 14 19 19 H 1.08002 * 119.99634 * 0.14725 * 18 16 15 20 20 C 1.37870 * 119.99925 * 180.14557 * 18 16 15 21 21 N 1.31516 * 120.00242 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99815 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47053 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47187 * 119.99794 * 22 20 18 25 25 H 1.48506 * 109.47177 * 239.99856 * 22 20 18 26 26 C 1.46926 * 120.63336 * 180.02562 * 12 10 9 27 27 C 1.38116 * 119.97306 * 89.99793 * 3 2 1 28 28 H 1.08996 * 109.47583 * 60.00141 * 1 2 3 29 29 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46967 * 299.99775 * 1 2 3 31 31 H 1.09002 * 109.47487 * 240.00268 * 2 1 3 32 32 H 1.08996 * 109.47583 * 119.99859 * 2 1 3 33 33 H 1.08000 * 119.93890 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.97191 * 179.97438 * 5 4 3 35 35 H 1.07999 * 120.02893 * 180.29334 * 6 5 4 36 36 H 1.08992 * 109.47241 * 60.00104 * 9 8 7 37 37 H 1.09000 * 109.47072 * 299.99559 * 9 8 7 38 38 H 1.08996 * 109.53610 * 6.53286 * 13 12 10 39 39 H 1.08997 * 109.56315 * 246.15731 * 13 12 10 40 40 H 1.09002 * 109.49713 * 294.70061 * 14 13 12 41 41 H 1.08996 * 109.49824 * 174.60179 * 14 13 12 42 42 H 1.09003 * 109.46001 * 178.60988 * 15 14 13 43 43 H 1.09005 * 109.44940 * 58.65266 * 15 14 13 44 44 H 0.97001 * 119.99838 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.58861 * 113.82042 * 26 12 10 46 46 H 1.08996 * 109.58519 * 353.53933 * 26 12 10 47 47 H 1.07996 * 120.03415 * 0.02759 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0723 -1.1980 5 6 2.7235 3.3755 -1.2013 6 6 2.9499 4.0325 -0.0072 7 6 2.7252 3.3794 1.1958 8 8 2.9525 4.0216 2.3717 9 6 3.4283 5.3669 2.2948 10 6 3.6217 5.9116 3.6865 11 8 3.3759 5.2164 4.6495 12 7 4.0680 7.1713 3.8612 13 6 4.3689 8.0317 2.7053 14 6 3.5956 9.3460 2.8518 15 6 3.9237 9.9780 4.2064 16 6 3.4895 9.0342 5.3302 17 1 2.4204 8.8382 5.2478 18 6 3.7828 9.6710 6.6642 19 1 4.2319 10.6522 6.7071 20 6 3.4779 9.0008 7.8299 21 7 2.9305 7.8061 7.7776 22 14 3.8408 9.7903 9.4835 23 1 4.4522 11.1268 9.2703 24 1 2.5769 9.9400 10.2487 25 1 4.7825 8.9317 10.2460 26 6 4.2621 7.7163 5.2118 27 6 2.2623 2.0713 1.1964 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0817 1.5619 -2.1325 34 1 2.9027 3.8820 -2.1382 35 1 3.3058 5.0521 -0.0103 36 1 2.7010 5.9797 1.7623 37 1 4.3791 5.3862 1.7622 38 1 4.0642 7.5289 1.7875 39 1 5.4385 8.2388 2.6731 40 1 2.5255 9.1470 2.7928 41 1 3.8837 10.0287 2.0525 42 1 3.3938 10.9256 4.3029 43 1 4.9973 10.1538 4.2744 44 1 2.7163 7.3345 8.5978 45 1 5.3231 7.8976 5.3836 46 1 3.8887 7.0061 5.9495 47 1 2.0827 1.5622 2.1318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597918554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:44 Heat of formation + Delta-G solvation = -61.892325 kcal Electronic energy + Delta-G solvation = -26247.889297 eV Core-core repulsion = 22588.285725 eV Total energy + Delta-G solvation = -3659.603573 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.42194 -39.34508 -37.78311 -36.54774 -33.99989 -33.46117 -31.87016 -30.84843 -29.93569 -29.28537 -28.12258 -25.08860 -24.54965 -23.85157 -22.61949 -21.89394 -21.08091 -19.79578 -18.39799 -18.01029 -16.77682 -16.24448 -16.22011 -16.10758 -15.74053 -15.03639 -14.76660 -14.49156 -14.24936 -13.97850 -13.77600 -13.68324 -13.38922 -13.24610 -12.93630 -12.69569 -12.55454 -12.33647 -12.07372 -11.98213 -11.86653 -11.57708 -11.22488 -11.04549 -11.01600 -10.95060 -10.85393 -10.52947 -10.44115 -10.27519 -9.94361 -9.31759 -9.16128 -8.95276 -8.90823 -8.46138 -8.27264 -7.83008 -6.01489 -4.10789 1.17323 1.34097 2.80685 3.09696 3.29483 3.37812 3.40505 3.61856 3.87550 4.41446 4.52775 4.60628 4.77648 4.82767 4.93363 5.01538 5.09326 5.10999 5.14984 5.20264 5.28097 5.28684 5.40888 5.41356 5.45222 5.57720 5.66492 5.73629 5.89576 5.91745 5.98114 6.08638 6.20138 6.24679 6.28656 6.45379 6.53565 6.60269 6.64465 6.79503 6.92394 7.06857 7.19787 7.36733 7.60606 7.83234 7.95621 8.15665 8.35534 8.76058 8.93788 9.55289 11.03773 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.002628 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.119073 B =10653.537854 C =11648.385535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 C -0.045 4.045 4 C -0.162 4.162 5 C -0.077 4.077 6 C -0.218 4.218 7 C 0.138 3.862 8 O -0.287 6.287 9 C 0.043 3.957 10 C 0.507 3.493 11 O -0.513 6.513 12 N -0.603 5.603 13 C 0.107 3.893 14 C -0.134 4.134 15 C -0.111 4.111 16 C 0.039 3.961 17 H 0.029 0.971 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.879 5.879 22 Si 0.892 3.108 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.113 3.887 27 C -0.149 4.149 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.264 0.736 45 H 0.044 0.956 46 H 0.124 0.876 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.211 -9.319 -20.322 22.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.122 4.122 3 C -0.045 4.045 4 C -0.180 4.180 5 C -0.095 4.095 6 C -0.236 4.236 7 C 0.092 3.908 8 O -0.199 6.199 9 C -0.036 4.036 10 C 0.292 3.708 11 O -0.388 6.388 12 N -0.339 5.339 13 C -0.017 4.017 14 C -0.173 4.173 15 C -0.149 4.149 16 C 0.020 3.980 17 H 0.047 0.953 18 C -0.560 4.560 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.517 5.517 22 Si 0.720 3.280 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.007 4.007 27 C -0.168 4.168 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.138 0.862 34 H 0.141 0.859 35 H 0.145 0.855 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.142 0.858 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -0.434 -9.916 -19.452 21.838 hybrid contribution 0.296 0.767 0.618 1.029 sum -0.138 -9.150 -18.833 20.939 Atomic orbital electron populations 1.21749 0.94507 1.01757 1.02464 1.20560 0.96361 0.92298 1.03022 1.19672 0.96649 0.95923 0.92222 1.20885 1.04259 0.95442 0.97403 1.20887 0.96886 0.94461 0.97265 1.21268 1.08837 1.01262 0.92275 1.19113 0.94693 0.92273 0.84711 1.86205 1.80221 1.26158 1.27274 1.22641 1.00377 0.82494 0.98086 1.19804 0.78936 0.82567 0.89494 1.90765 1.49166 1.57336 1.41531 1.48516 1.64722 1.11176 1.09439 1.21738 0.99821 0.92108 0.88012 1.21952 1.00234 0.95776 0.99296 1.21629 1.00314 0.99239 0.93678 1.18992 0.96047 0.90265 0.92672 0.95261 1.21098 1.41893 1.02991 0.90008 0.92249 1.25068 0.94749 0.94925 0.99356 1.69892 1.41455 1.12274 1.28056 0.86531 0.78027 0.79388 0.84028 1.19789 1.20987 1.20949 1.22360 0.98940 0.99532 0.79841 1.20318 1.04947 0.92708 0.98801 0.92538 0.92342 0.92265 0.90875 0.90745 0.86162 0.85863 0.85509 0.89461 0.89592 0.91575 0.91564 0.92056 0.92025 0.92884 0.93080 0.92621 0.93726 0.85841 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.89 37.15 0.37 -0.73 16 2 C -0.09 -0.68 6.06 -27.89 -0.17 -0.85 16 3 C -0.04 -0.46 5.13 -104.65 -0.54 -1.00 16 4 C -0.16 -1.55 9.70 -39.56 -0.38 -1.93 16 5 C -0.08 -0.75 10.04 -39.61 -0.40 -1.15 16 6 C -0.22 -2.48 9.04 -39.43 -0.36 -2.83 16 7 C 0.14 1.93 6.69 -39.21 -0.26 1.67 16 8 O -0.29 -4.84 9.67 -39.35 -0.38 -5.22 16 9 C 0.04 0.64 3.58 36.00 0.13 0.77 16 10 C 0.51 10.26 7.78 -10.99 -0.09 10.18 16 11 O -0.51 -13.06 15.91 -14.36 -0.23 -13.28 16 12 N -0.60 -11.80 2.98 -172.52 -0.51 -12.31 16 13 C 0.11 1.54 6.35 -3.56 -0.02 1.52 16 14 C -0.13 -2.03 6.08 -26.61 -0.16 -2.19 16 15 C -0.11 -2.13 5.11 -26.69 -0.14 -2.26 16 16 C 0.04 0.96 2.25 -91.63 -0.21 0.75 16 17 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 18 C -0.52 -13.97 8.57 -34.44 -0.29 -14.27 16 19 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 21 N -0.88 -25.69 11.39 55.43 0.63 -25.06 16 22 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 C 0.11 2.70 5.40 -3.69 -0.02 2.68 16 27 C -0.15 -1.91 9.64 -39.43 -0.38 -2.29 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 32 H 0.07 0.57 8.08 -51.93 -0.42 0.15 16 33 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.13 1.21 6.30 -52.49 -0.33 0.88 16 36 H 0.09 1.09 7.20 -51.93 -0.37 0.72 16 37 H 0.09 1.02 7.49 -51.93 -0.39 0.63 16 38 H 0.07 0.72 5.97 -51.93 -0.31 0.41 16 39 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.12 3.50 5.12 -51.93 -0.27 3.23 16 47 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 377.30 15.07 5.69 5.69 Total: -1.00 -32.67 377.30 -10.39 -43.06 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.55 Total: 1.28 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -3.01 Total: -10.33 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.12 Total: -37.38 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: -0.61 Total: -18.50 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.67 -10.39 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597918554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.833 kcal (2) G-P(sol) polarization free energy of solvation -32.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds