Wall clock time and date at job start Tue Mar 31 2020 12:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50698 * 109.47273 * 2 1 4 4 C 1.38295 * 119.97331 * 270.02298 * 3 2 1 5 5 C 1.38241 * 120.11244 * 180.02562 * 4 3 2 6 6 C 1.38163 * 120.05586 * 359.68398 * 5 4 3 7 7 C 1.38714 * 119.94318 * 0.57212 * 6 5 4 8 8 O 1.35903 * 120.05632 * 179.72468 * 7 6 5 9 9 C 1.42905 * 116.99803 * 359.72357 * 8 7 6 10 10 C 1.50696 * 109.46808 * 180.02562 * 9 8 7 11 11 O 1.21286 * 120.00306 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00030 * 179.97438 * 10 9 8 13 13 C 1.47207 * 120.81118 * 0.14238 * 12 10 9 14 14 C 1.53195 * 108.85456 * 126.33789 * 13 12 10 15 15 C 1.53038 * 109.31078 * 54.64814 * 14 13 12 16 16 C 1.53035 * 109.54175 * 298.63655 * 15 14 13 17 17 H 1.09003 * 109.49576 * 301.41349 * 16 15 14 18 18 C 1.50708 * 109.52628 * 181.33267 * 16 15 14 19 19 H 1.08002 * 119.99634 * 0.14725 * 18 16 15 20 20 C 1.37870 * 119.99925 * 180.14557 * 18 16 15 21 21 N 1.31516 * 120.00242 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99815 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47053 * 359.97438 * 22 20 18 24 24 H 1.48508 * 109.47187 * 119.99794 * 22 20 18 25 25 H 1.48506 * 109.47177 * 239.99856 * 22 20 18 26 26 C 1.46926 * 120.63336 * 180.02562 * 12 10 9 27 27 C 1.38116 * 119.97306 * 89.99793 * 3 2 1 28 28 H 1.08996 * 109.47583 * 60.00141 * 1 2 3 29 29 H 1.09000 * 109.47174 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46967 * 299.99775 * 1 2 3 31 31 H 1.09002 * 109.47487 * 240.00268 * 2 1 3 32 32 H 1.08996 * 109.47583 * 119.99859 * 2 1 3 33 33 H 1.08000 * 119.93890 * 359.97438 * 4 3 2 34 34 H 1.07997 * 119.97191 * 179.97438 * 5 4 3 35 35 H 1.07999 * 120.02893 * 180.29334 * 6 5 4 36 36 H 1.08992 * 109.47241 * 60.00104 * 9 8 7 37 37 H 1.09000 * 109.47072 * 299.99559 * 9 8 7 38 38 H 1.08996 * 109.53610 * 6.53286 * 13 12 10 39 39 H 1.08997 * 109.56315 * 246.15731 * 13 12 10 40 40 H 1.09002 * 109.49713 * 294.70061 * 14 13 12 41 41 H 1.08996 * 109.49824 * 174.60179 * 14 13 12 42 42 H 1.09003 * 109.46001 * 178.60988 * 15 14 13 43 43 H 1.09005 * 109.44940 * 58.65266 * 15 14 13 44 44 H 0.97001 * 119.99838 * 179.97438 * 21 20 18 45 45 H 1.09002 * 109.58861 * 113.82042 * 26 12 10 46 46 H 1.08996 * 109.58519 * 353.53933 * 26 12 10 47 47 H 1.07996 * 120.03415 * 0.02759 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2622 2.0723 -1.1980 5 6 2.7235 3.3755 -1.2013 6 6 2.9499 4.0325 -0.0072 7 6 2.7252 3.3794 1.1958 8 8 2.9525 4.0216 2.3717 9 6 3.4283 5.3669 2.2948 10 6 3.6217 5.9116 3.6865 11 8 3.3759 5.2164 4.6495 12 7 4.0680 7.1713 3.8612 13 6 4.3689 8.0317 2.7053 14 6 3.5956 9.3460 2.8518 15 6 3.9237 9.9780 4.2064 16 6 3.4895 9.0342 5.3302 17 1 2.4204 8.8382 5.2478 18 6 3.7828 9.6710 6.6642 19 1 4.2319 10.6522 6.7071 20 6 3.4779 9.0008 7.8299 21 7 2.9305 7.8061 7.7776 22 14 3.8408 9.7903 9.4835 23 1 4.4522 11.1268 9.2703 24 1 2.5769 9.9400 10.2487 25 1 4.7825 8.9317 10.2460 26 6 4.2621 7.7163 5.2118 27 6 2.2623 2.0713 1.1964 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 2.0817 1.5619 -2.1325 34 1 2.9027 3.8820 -2.1382 35 1 3.3058 5.0521 -0.0103 36 1 2.7010 5.9797 1.7623 37 1 4.3791 5.3862 1.7622 38 1 4.0642 7.5289 1.7875 39 1 5.4385 8.2388 2.6731 40 1 2.5255 9.1470 2.7928 41 1 3.8837 10.0287 2.0525 42 1 3.3938 10.9256 4.3029 43 1 4.9973 10.1538 4.2744 44 1 2.7163 7.3345 8.5978 45 1 5.3231 7.8976 5.3836 46 1 3.8887 7.0061 5.9495 47 1 2.0827 1.5622 2.1318 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597918554.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:06:43 Heat of formation + Delta-G solvation = -80.140702 kcal Electronic energy + Delta-G solvation = -26248.680606 eV Core-core repulsion = 22588.285725 eV Total energy + Delta-G solvation = -3660.394882 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.55250 -40.67368 -38.87572 -38.10565 -35.35669 -34.70548 -33.55184 -31.95115 -31.42856 -30.05271 -29.39768 -26.95996 -25.93468 -24.73844 -23.52247 -23.39036 -22.10235 -21.25958 -19.85797 -19.09954 -18.49578 -17.68240 -17.40098 -17.30664 -16.82926 -16.55534 -16.18788 -15.71060 -15.46112 -15.20718 -14.99237 -14.71989 -14.51228 -14.41771 -14.23951 -14.09393 -13.79612 -13.70331 -13.47271 -13.02142 -12.93118 -12.74630 -12.67594 -12.35269 -12.30787 -12.22632 -11.94889 -11.86028 -11.81584 -11.64970 -11.62161 -11.14371 -10.96716 -10.65787 -10.53318 -9.75700 -9.48462 -9.16436 -8.12988 -6.30441 0.37470 0.49350 1.37594 1.39669 1.51663 1.54632 1.61376 2.39474 2.59897 2.80693 3.15416 3.41989 3.79791 3.86107 3.95987 4.03150 4.07570 4.14846 4.17793 4.26022 4.33602 4.41168 4.49938 4.52908 4.59504 4.66558 4.71320 4.76816 4.78847 4.85293 5.08592 5.10072 5.10195 5.14948 5.24798 5.26959 5.33973 5.36248 5.39010 5.50614 5.51798 5.60140 5.68427 5.85883 5.89044 5.98137 6.30182 6.39550 6.58178 6.83543 7.21778 7.40410 8.90375 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021715 B = 0.002628 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.119073 B =10653.537854 C =11648.385535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.048 4.048 4 C -0.159 4.159 5 C -0.074 4.074 6 C -0.219 4.219 7 C 0.107 3.893 8 O -0.327 6.327 9 C 0.056 3.944 10 C 0.495 3.505 11 O -0.584 6.584 12 N -0.604 5.604 13 C 0.098 3.902 14 C -0.127 4.127 15 C -0.106 4.106 16 C 0.037 3.963 17 H -0.015 1.015 18 C -0.533 4.533 19 H 0.064 0.936 20 C 0.007 3.993 21 N -0.917 5.917 22 Si 0.958 3.042 23 H -0.258 1.258 24 H -0.283 1.283 25 H -0.284 1.284 26 C 0.124 3.876 27 C -0.176 4.176 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.040 0.960 31 H 0.094 0.906 32 H 0.069 0.931 33 H 0.149 0.851 34 H 0.158 0.842 35 H 0.150 0.850 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.114 0.886 39 H 0.088 0.912 40 H 0.051 0.949 41 H 0.109 0.891 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.259 0.741 45 H 0.041 0.959 46 H 0.073 0.927 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 -8.258 -24.663 26.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.048 4.048 4 C -0.177 4.177 5 C -0.092 4.092 6 C -0.238 4.238 7 C 0.062 3.938 8 O -0.241 6.241 9 C -0.021 4.021 10 C 0.283 3.717 11 O -0.464 6.464 12 N -0.338 5.338 13 C -0.023 4.023 14 C -0.165 4.165 15 C -0.144 4.144 16 C 0.018 3.982 17 H 0.003 0.997 18 C -0.572 4.572 19 H 0.082 0.918 20 C -0.192 4.192 21 N -0.556 5.556 22 Si 0.783 3.217 23 H -0.182 1.182 24 H -0.209 1.209 25 H -0.210 1.210 26 C 0.002 3.998 27 C -0.195 4.195 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.167 0.833 34 H 0.175 0.825 35 H 0.168 0.832 36 H 0.136 0.864 37 H 0.144 0.856 38 H 0.132 0.868 39 H 0.107 0.893 40 H 0.070 0.930 41 H 0.128 0.872 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.068 0.932 45 H 0.059 0.941 46 H 0.091 0.909 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.578 -8.814 -23.854 25.437 hybrid contribution -0.039 0.402 1.899 1.942 sum 0.539 -8.412 -21.955 23.517 Atomic orbital electron populations 1.21736 0.94142 1.02570 1.01833 1.20626 0.96603 0.91111 1.03885 1.19958 0.96097 0.96934 0.91793 1.21303 1.02770 0.95666 0.97942 1.21329 0.95423 0.94467 0.97977 1.21545 1.08356 1.02258 0.91592 1.19390 0.96820 0.92786 0.84790 1.86143 1.81270 1.27050 1.29599 1.22598 1.03183 0.82368 0.94000 1.20880 0.77367 0.82175 0.91328 1.90727 1.52086 1.59212 1.44356 1.48527 1.64056 1.11841 1.09332 1.22207 1.01283 0.91277 0.87493 1.21930 0.99934 0.96739 0.97933 1.21525 1.00607 0.98067 0.94210 1.18932 0.93457 0.91706 0.94110 0.99657 1.21567 1.41009 1.03123 0.91481 0.91765 1.25934 0.94757 0.95284 1.03271 1.70108 1.43101 1.13900 1.28480 0.85503 0.77708 0.78953 0.79488 1.18183 1.20948 1.20963 1.21750 0.98007 0.98240 0.81840 1.20459 1.06519 0.93144 0.99333 0.91985 0.90842 0.94041 0.88714 0.91181 0.83287 0.82458 0.83241 0.86399 0.85645 0.86766 0.89343 0.92973 0.87230 0.92934 0.92211 0.93225 0.94095 0.90905 0.86840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.89 71.98 0.71 -1.30 16 2 C -0.09 -1.25 6.06 29.85 0.18 -1.07 16 3 C -0.05 -0.94 5.13 -19.88 -0.10 -1.04 16 4 C -0.16 -2.51 9.70 22.28 0.22 -2.29 16 5 C -0.07 -1.14 10.04 22.25 0.22 -0.92 16 6 C -0.22 -4.32 9.04 22.37 0.20 -4.11 16 7 C 0.11 2.95 6.69 22.51 0.15 3.10 16 8 O -0.33 -11.28 9.67 -73.42 -0.71 -11.99 16 9 C 0.06 1.58 3.58 71.23 0.25 1.84 16 10 C 0.49 20.52 7.78 87.66 0.68 21.20 16 11 O -0.58 -32.03 15.91 15.99 0.25 -31.77 16 12 N -0.60 -23.63 2.98 -818.11 -2.44 -26.07 16 13 C 0.10 2.48 6.35 86.31 0.55 3.03 16 14 C -0.13 -3.41 6.08 30.67 0.19 -3.23 16 15 C -0.11 -3.94 5.11 30.62 0.16 -3.79 16 16 C 0.04 1.87 2.25 -11.45 -0.03 1.84 16 17 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 18 C -0.53 -29.43 8.57 25.60 0.22 -29.21 16 19 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 20 C 0.01 0.38 5.30 84.65 0.45 0.83 16 21 N -0.92 -57.01 11.39 21.44 0.24 -56.77 16 22 Si 0.96 44.83 29.54 68.60 2.03 46.85 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 26 C 0.12 6.20 5.40 86.38 0.47 6.67 16 27 C -0.18 -4.63 9.64 22.36 0.22 -4.42 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 0.99 8.09 -2.39 -0.02 0.97 16 32 H 0.07 1.07 8.08 -2.39 -0.02 1.06 16 33 H 0.15 1.48 8.06 -2.91 -0.02 1.46 16 34 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.15 2.13 6.30 -2.91 -0.02 2.11 16 36 H 0.12 2.56 7.20 -2.39 -0.02 2.54 16 37 H 0.13 2.50 7.49 -2.39 -0.02 2.48 16 38 H 0.11 1.83 5.97 -2.39 -0.01 1.82 16 39 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.06 2.10 8.14 -2.38 -0.02 2.08 16 44 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 45 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 46 H 0.07 4.45 5.12 -2.39 -0.01 4.44 16 47 H 0.11 3.21 8.06 -2.91 -0.02 3.18 16 Total: -1.00 -81.00 377.30 5.05 -75.95 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: 0.94 Total: 16.66 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 4.74 Total: -12.86 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -2.20 Total: -82.84 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -0.46 Total: -43.76 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.85 kcal Total: -81.00 5.05 -75.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597918554.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.191 kcal (2) G-P(sol) polarization free energy of solvation -81.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds