Wall clock time and date at job start Tue Mar 31 2020 11:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 120.00028 * 2 1 4 4 C 1.53009 * 109.46732 * 269.99516 * 3 2 1 5 5 C 1.53001 * 112.99650 * 50.33745 * 4 3 2 6 6 C 1.54034 * 113.81655 * 278.50743 * 4 3 2 7 7 O 1.44439 * 85.42546 * 223.23718 * 6 4 3 8 8 C 1.44180 * 93.38020 * 24.09267 * 7 6 4 9 9 C 1.34777 * 119.99410 * 179.97438 * 2 1 3 10 10 O 1.21284 * 119.99926 * 179.97438 * 9 2 1 11 11 C 1.50696 * 120.00349 * 0.02562 * 9 2 1 12 12 C 1.53007 * 109.47286 * 179.97438 * 11 9 2 13 13 H 1.08994 * 109.46912 * 54.99618 * 12 11 9 14 14 C 1.50702 * 109.46514 * 294.99503 * 12 11 9 15 15 H 1.07995 * 120.00271 * 328.63143 * 14 12 11 16 16 C 1.37881 * 119.99449 * 148.63586 * 14 12 11 17 17 N 1.31510 * 119.99956 * 5.84438 * 16 14 12 18 18 Si 1.86804 * 119.99699 * 185.84295 * 16 14 12 19 19 H 1.48494 * 109.47020 * 90.00239 * 18 16 14 20 20 H 1.48500 * 109.46954 * 210.00175 * 18 16 14 21 21 H 1.48499 * 109.46841 * 329.99961 * 18 16 14 22 22 C 1.50697 * 109.47032 * 174.99785 * 12 11 9 23 23 C 1.38238 * 119.99613 * 242.96223 * 22 12 11 24 24 C 1.38237 * 119.99605 * 179.97438 * 23 22 12 25 25 C 1.38232 * 120.00396 * 359.97176 * 24 23 22 26 26 C 1.38241 * 119.99821 * 0.02562 * 25 24 23 27 27 C 1.38230 * 120.00134 * 62.98341 * 22 12 11 28 28 H 1.09001 * 109.47211 * 270.00771 * 1 2 3 29 29 H 1.09003 * 109.47017 * 30.00189 * 1 2 3 30 30 H 1.08997 * 109.47270 * 150.00268 * 1 2 3 31 31 H 1.08996 * 109.47575 * 29.99703 * 3 2 1 32 32 H 1.08997 * 109.46755 * 149.99963 * 3 2 1 33 33 H 1.08999 * 109.47104 * 60.00042 * 5 4 3 34 34 H 1.09002 * 109.46745 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.47214 * 299.99741 * 5 4 3 36 36 H 1.08996 * 113.86640 * 337.34974 * 6 4 3 37 37 H 1.09001 * 113.86263 * 109.04945 * 6 4 3 38 38 H 1.09000 * 113.86958 * 221.76737 * 8 7 6 39 39 H 1.09003 * 113.98349 * 90.06967 * 8 7 6 40 40 H 1.08998 * 109.47526 * 59.99135 * 11 9 2 41 41 H 1.09006 * 109.46842 * 299.99258 * 11 9 2 42 42 H 0.97007 * 119.99631 * 179.97438 * 17 16 14 43 43 H 1.07995 * 120.00374 * 0.02562 * 23 22 12 44 44 H 1.08000 * 119.99634 * 179.97438 * 24 23 22 45 45 H 1.07996 * 119.99909 * 179.72572 * 25 24 23 46 46 H 1.07992 * 119.99963 * 179.97438 * 26 25 24 47 47 H 1.07996 * 120.00454 * 0.02562 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 6 1.1896 1.6909 -2.3059 6 6 3.6650 1.0227 -2.0984 7 8 3.9872 2.3352 -2.6082 8 6 3.2662 3.0130 -1.5596 9 6 2.1388 -1.1673 0.0005 10 8 3.3517 -1.1674 0.0001 11 6 1.3853 -2.4723 0.0005 12 6 2.3795 -3.6354 0.0005 13 1 3.0636 -3.5285 0.8423 14 6 3.1622 -3.6270 -1.2873 15 1 2.7035 -3.2653 -2.1956 16 6 4.4639 -4.0812 -1.3057 17 7 4.9850 -4.6276 -0.2290 18 14 5.4872 -3.9203 -2.8602 19 1 6.2034 -2.6196 -2.8490 20 1 6.4741 -5.0283 -2.9200 21 1 4.5975 -3.9854 -4.0474 22 6 1.6300 -4.9368 0.1244 23 6 1.8277 -5.7459 1.2277 24 6 1.1398 -6.9395 1.3416 25 6 0.2538 -7.3238 0.3526 26 6 0.0561 -6.5147 -0.7507 27 6 0.7452 -5.3218 -0.8654 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6086 2.0284 0.5138 32 1 3.1499 1.1383 0.5138 33 1 0.4476 2.3659 -1.8793 34 1 1.4358 2.0144 -3.3172 35 1 0.7855 0.6790 -2.3359 36 1 4.3922 0.6360 -1.3845 37 1 3.3983 0.3014 -2.8709 38 1 2.6838 3.8670 -1.9057 39 1 3.8697 3.2366 -0.6799 40 1 0.7589 -2.5302 -0.8896 41 1 0.7584 -2.5298 0.8904 42 1 5.9007 -4.9474 -0.2421 43 1 2.5190 -5.4451 2.0010 44 1 1.2946 -7.5718 2.2034 45 1 -0.2802 -8.2585 0.4395 46 1 -0.6358 -6.8151 -1.5235 47 1 0.5913 -4.6901 -1.7277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600304683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:51 Heat of formation + Delta-G solvation = -21.807725 kcal Electronic energy + Delta-G solvation = -27695.181358 eV Core-core repulsion = 24037.315984 eV Total energy + Delta-G solvation = -3657.865374 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.69248 -39.06336 -38.17448 -35.34319 -33.96937 -32.12539 -31.33532 -29.99166 -28.97920 -27.84531 -26.43034 -26.01062 -25.64760 -24.39886 -22.54973 -21.59045 -19.89943 -18.83282 -18.30562 -16.65289 -16.51980 -16.06803 -16.03343 -15.84551 -15.58704 -15.05578 -14.43764 -14.30156 -14.08310 -13.84665 -13.50871 -13.10080 -12.88094 -12.71154 -12.53156 -12.39620 -12.20779 -11.98862 -11.93823 -11.87732 -11.75128 -11.60784 -11.25599 -10.88085 -10.72096 -10.61669 -10.54096 -10.33827 -10.24688 -10.03211 -9.51990 -9.44001 -9.05421 -8.84011 -8.33732 -8.17762 -8.02714 -7.58776 -5.92863 -3.92325 2.30621 2.36462 3.36894 3.39617 3.44827 3.46989 3.49595 3.88113 4.29810 4.52595 4.76755 4.81327 5.06877 5.16333 5.19587 5.29833 5.42959 5.49274 5.53213 5.58644 5.63106 5.67622 5.74110 5.76738 5.85397 5.86503 5.91123 5.94582 6.01328 6.09637 6.19520 6.25539 6.29070 6.31449 6.42098 6.42837 6.54869 6.77679 6.88877 6.94881 7.06441 7.32666 7.45272 7.54223 7.85912 7.91655 7.96518 8.07430 8.38871 9.02531 9.07163 9.69634 11.17104 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013097 B = 0.004778 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.375415 B = 5858.842437 C = 7198.127430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.632 5.632 3 C 0.128 3.872 4 C -0.146 4.146 5 C -0.123 4.123 6 C 0.054 3.946 7 O -0.388 6.388 8 C 0.045 3.955 9 C 0.514 3.486 10 O -0.492 6.492 11 C -0.120 4.120 12 C 0.081 3.919 13 H 0.069 0.931 14 C -0.489 4.489 15 H 0.049 0.951 16 C 0.079 3.921 17 N -0.881 5.881 18 Si 0.882 3.118 19 H -0.279 1.279 20 H -0.289 1.289 21 H -0.276 1.276 22 C -0.019 4.019 23 C -0.117 4.117 24 C -0.128 4.128 25 C -0.156 4.156 26 C -0.132 4.132 27 C -0.115 4.115 28 H 0.048 0.952 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.064 0.936 42 H 0.259 0.741 43 H 0.113 0.887 44 H 0.105 0.895 45 H 0.103 0.897 46 H 0.105 0.895 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.576 9.587 1.707 15.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.369 5.369 3 C 0.004 3.996 4 C -0.148 4.148 5 C -0.180 4.180 6 C -0.022 4.022 7 O -0.307 6.307 8 C -0.033 4.033 9 C 0.303 3.697 10 O -0.362 6.362 11 C -0.160 4.160 12 C 0.062 3.938 13 H 0.087 0.913 14 C -0.527 4.527 15 H 0.068 0.932 16 C -0.124 4.124 17 N -0.518 5.518 18 Si 0.711 3.289 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.201 1.201 22 C -0.020 4.020 23 C -0.135 4.135 24 C -0.147 4.147 25 C -0.174 4.174 26 C -0.150 4.150 27 C -0.134 4.134 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.123 0.877 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -10.559 9.555 1.558 14.325 hybrid contribution 0.481 -0.145 -0.823 0.964 sum -10.078 9.410 0.735 13.808 Atomic orbital electron populations 1.21765 0.80542 1.02803 1.01158 1.48014 1.06264 1.05768 1.76885 1.21338 0.98164 0.85580 0.94471 1.24088 0.97262 0.95878 0.97525 1.21555 0.95186 1.02397 0.98905 1.24170 0.94338 0.85949 0.97776 1.89674 1.76753 1.19051 1.45265 1.23926 0.92627 0.95430 0.91316 1.20946 0.88581 0.84702 0.75505 1.90735 1.13548 1.86379 1.45581 1.21806 0.99429 0.93670 1.01081 1.17826 0.90991 0.84364 1.00613 0.91291 1.20646 0.96710 1.41998 0.93312 0.93244 1.24789 0.97619 0.94405 0.95616 1.69915 1.14673 1.39292 1.27906 0.86756 0.80510 0.77700 0.83956 1.20534 1.21546 1.20142 1.20720 0.91334 0.98841 0.91102 1.21075 0.99080 0.94741 0.98594 1.20981 0.97874 0.97093 0.98713 1.20787 1.01118 0.99642 0.95872 1.20965 1.00701 0.95677 0.97700 1.20925 0.97244 0.96377 0.98813 0.93370 0.91694 0.90950 0.91110 0.89714 0.92448 0.92250 0.91434 0.88634 0.89480 0.89643 0.90392 0.90624 0.91778 0.93168 0.86893 0.87700 0.87859 0.87735 0.87019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.83 9.11 59.85 0.55 1.38 16 2 N -0.63 -8.92 2.44 -181.56 -0.44 -9.37 16 3 C 0.13 1.63 4.96 -4.04 -0.02 1.61 16 4 C -0.15 -1.87 1.20 -153.42 -0.18 -2.06 16 5 C -0.12 -1.37 7.67 37.16 0.29 -1.09 16 6 C 0.05 0.90 7.74 37.64 0.29 1.19 16 7 O -0.39 -6.29 12.38 -35.23 -0.44 -6.72 16 8 C 0.04 0.53 8.37 37.64 0.31 0.85 16 9 C 0.51 9.67 7.40 -10.99 -0.08 9.59 16 10 O -0.49 -11.41 13.17 5.55 0.07 -11.34 16 11 C -0.12 -2.23 3.49 -27.88 -0.10 -2.32 16 12 C 0.08 1.89 1.63 -92.92 -0.15 1.73 16 13 H 0.07 1.86 7.06 -51.93 -0.37 1.49 16 14 C -0.49 -12.82 6.39 -34.44 -0.22 -13.04 16 15 H 0.05 1.30 7.82 -52.49 -0.41 0.89 16 16 C 0.08 2.20 5.45 -17.82 -0.10 2.10 16 17 N -0.88 -25.59 12.91 55.43 0.72 -24.88 16 18 Si 0.88 22.17 29.54 -169.99 -5.02 17.15 16 19 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C -0.02 -0.42 4.77 -104.63 -0.50 -0.92 16 23 C -0.12 -2.45 9.67 -39.58 -0.38 -2.84 16 24 C -0.13 -2.37 10.05 -39.58 -0.40 -2.77 16 25 C -0.16 -2.71 10.05 -39.58 -0.40 -3.11 16 26 C -0.13 -2.36 10.05 -39.58 -0.40 -2.75 16 27 C -0.12 -2.30 8.86 -39.58 -0.35 -2.65 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.54 6.36 -51.93 -0.33 0.21 16 30 H 0.07 0.74 6.44 -51.93 -0.33 0.41 16 31 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 32 H 0.08 1.25 7.26 -51.93 -0.38 0.87 16 33 H 0.06 0.51 7.73 -51.93 -0.40 0.10 16 34 H 0.06 0.69 8.09 -51.93 -0.42 0.27 16 35 H 0.07 0.81 6.71 -51.93 -0.35 0.46 16 36 H 0.10 1.80 7.22 -51.93 -0.38 1.42 16 37 H 0.09 1.55 8.10 -51.93 -0.42 1.13 16 38 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 39 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 40 H 0.08 1.31 7.00 -51.93 -0.36 0.94 16 41 H 0.06 1.06 8.11 -51.93 -0.42 0.64 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.11 2.41 7.95 -52.49 -0.42 1.99 16 44 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 45 H 0.10 1.50 8.06 -52.49 -0.42 1.08 16 46 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16 47 H 0.11 2.14 7.75 -52.49 -0.41 1.74 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -31.68 377.10 -8.75 -40.43 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -7.48 Total: 4.14 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: -1.84 Total: -15.09 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.27 Total: -34.24 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.36 Total: -18.06 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.68 -8.75 -40.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600304683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.624 kcal (2) G-P(sol) polarization free energy of solvation -31.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds