Wall clock time and date at job start Tue Mar 31 2020 11:04:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46507 * 1
3 3 C 1.46498 * 120.00028 * 2 1
4 4 C 1.53009 * 109.46732 * 269.99516 * 3 2 1
5 5 C 1.53001 * 112.99650 * 50.33745 * 4 3 2
6 6 C 1.54034 * 113.81655 * 278.50743 * 4 3 2
7 7 O 1.44439 * 85.42546 * 223.23718 * 6 4 3
8 8 C 1.44180 * 93.38020 * 24.09267 * 7 6 4
9 9 C 1.34777 * 119.99410 * 179.97438 * 2 1 3
10 10 O 1.21284 * 119.99926 * 179.97438 * 9 2 1
11 11 C 1.50696 * 120.00349 * 0.02562 * 9 2 1
12 12 C 1.53007 * 109.47286 * 179.97438 * 11 9 2
13 13 H 1.08994 * 109.46912 * 54.99618 * 12 11 9
14 14 C 1.50702 * 109.46514 * 294.99503 * 12 11 9
15 15 H 1.07995 * 120.00271 * 328.63143 * 14 12 11
16 16 C 1.37881 * 119.99449 * 148.63586 * 14 12 11
17 17 N 1.31510 * 119.99956 * 5.84438 * 16 14 12
18 18 Si 1.86804 * 119.99699 * 185.84295 * 16 14 12
19 19 H 1.48494 * 109.47020 * 90.00239 * 18 16 14
20 20 H 1.48500 * 109.46954 * 210.00175 * 18 16 14
21 21 H 1.48499 * 109.46841 * 329.99961 * 18 16 14
22 22 C 1.50697 * 109.47032 * 174.99785 * 12 11 9
23 23 C 1.38238 * 119.99613 * 242.96223 * 22 12 11
24 24 C 1.38237 * 119.99605 * 179.97438 * 23 22 12
25 25 C 1.38232 * 120.00396 * 359.97176 * 24 23 22
26 26 C 1.38241 * 119.99821 * 0.02562 * 25 24 23
27 27 C 1.38230 * 120.00134 * 62.98341 * 22 12 11
28 28 H 1.09001 * 109.47211 * 270.00771 * 1 2 3
29 29 H 1.09003 * 109.47017 * 30.00189 * 1 2 3
30 30 H 1.08997 * 109.47270 * 150.00268 * 1 2 3
31 31 H 1.08996 * 109.47575 * 29.99703 * 3 2 1
32 32 H 1.08997 * 109.46755 * 149.99963 * 3 2 1
33 33 H 1.08999 * 109.47104 * 60.00042 * 5 4 3
34 34 H 1.09002 * 109.46745 * 179.97438 * 5 4 3
35 35 H 1.08999 * 109.47214 * 299.99741 * 5 4 3
36 36 H 1.08996 * 113.86640 * 337.34974 * 6 4 3
37 37 H 1.09001 * 113.86263 * 109.04945 * 6 4 3
38 38 H 1.09000 * 113.86958 * 221.76737 * 8 7 6
39 39 H 1.09003 * 113.98349 * 90.06967 * 8 7 6
40 40 H 1.08998 * 109.47526 * 59.99135 * 11 9 2
41 41 H 1.09006 * 109.46842 * 299.99258 * 11 9 2
42 42 H 0.97007 * 119.99631 * 179.97438 * 17 16 14
43 43 H 1.07995 * 120.00374 * 0.02562 * 23 22 12
44 44 H 1.08000 * 119.99634 * 179.97438 * 24 23 22
45 45 H 1.07996 * 119.99909 * 179.72572 * 25 24 23
46 46 H 1.07992 * 119.99963 * 179.97438 * 26 25 24
47 47 H 1.07996 * 120.00454 * 0.02562 * 27 22 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1976 1.2687 0.0000
4 6 2.4526 1.7103 -1.4426
5 6 1.1896 1.6909 -2.3059
6 6 3.6650 1.0227 -2.0984
7 8 3.9872 2.3352 -2.6082
8 6 3.2662 3.0130 -1.5596
9 6 2.1388 -1.1673 0.0005
10 8 3.3517 -1.1674 0.0001
11 6 1.3853 -2.4723 0.0005
12 6 2.3795 -3.6354 0.0005
13 1 3.0636 -3.5285 0.8423
14 6 3.1622 -3.6270 -1.2873
15 1 2.7035 -3.2653 -2.1956
16 6 4.4639 -4.0812 -1.3057
17 7 4.9850 -4.6276 -0.2290
18 14 5.4872 -3.9203 -2.8602
19 1 6.2034 -2.6196 -2.8490
20 1 6.4741 -5.0283 -2.9200
21 1 4.5975 -3.9854 -4.0474
22 6 1.6300 -4.9368 0.1244
23 6 1.8277 -5.7459 1.2277
24 6 1.1398 -6.9395 1.3416
25 6 0.2538 -7.3238 0.3526
26 6 0.0561 -6.5147 -0.7507
27 6 0.7452 -5.3218 -0.8654
28 1 -0.3634 0.0001 1.0277
29 1 -0.3633 0.8900 -0.5139
30 1 -0.3634 -0.8900 -0.5138
31 1 1.6086 2.0284 0.5138
32 1 3.1499 1.1383 0.5138
33 1 0.4476 2.3659 -1.8793
34 1 1.4358 2.0144 -3.3172
35 1 0.7855 0.6790 -2.3359
36 1 4.3922 0.6360 -1.3845
37 1 3.3983 0.3014 -2.8709
38 1 2.6838 3.8670 -1.9057
39 1 3.8697 3.2366 -0.6799
40 1 0.7589 -2.5302 -0.8896
41 1 0.7584 -2.5298 0.8904
42 1 5.9007 -4.9474 -0.2421
43 1 2.5190 -5.4451 2.0010
44 1 1.2946 -7.5718 2.2034
45 1 -0.2802 -8.2585 0.4395
46 1 -0.6358 -6.8151 -1.5235
47 1 0.5913 -4.6901 -1.7277
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000600304683.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:04:50
Heat of formation + Delta-G solvation = -40.344203 kcal
Electronic energy + Delta-G solvation = -27695.985160 eV
Core-core repulsion = 24037.315984 eV
Total energy + Delta-G solvation = -3658.669176 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.178 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-41.85943 -40.50316 -39.64544 -36.66114 -35.71992 -33.58172 -32.95454 -31.48120
-30.39189 -28.88453 -27.68885 -27.55333 -26.73002 -25.88009 -24.11593 -23.09677
-21.44915 -20.10425 -19.54733 -18.48436 -17.96750 -17.28524 -17.25454 -17.15896
-16.85843 -16.53891 -16.21606 -15.68508 -15.57288 -15.37426 -14.61415 -14.43015
-14.25502 -14.06370 -13.93690 -13.67849 -13.52451 -13.47039 -13.21833 -13.14747
-12.92684 -12.89613 -12.82917 -12.51116 -12.50295 -12.30838 -11.82625 -11.71361
-11.62418 -11.47202 -11.29525 -10.93267 -10.72466 -10.53957 -10.25680 -9.52144
-9.36522 -9.16589 -8.04567 -6.05675 0.79939 0.86466 1.32080 1.37895
1.40657 2.02178 2.24496 2.44368 2.75519 3.19802 3.20936 3.36718
3.79072 4.01524 4.10564 4.14197 4.27073 4.36910 4.41139 4.43611
4.44940 4.51618 4.55998 4.57547 4.63632 4.70226 4.76565 4.83197
4.87584 4.92598 4.95921 4.97522 5.01643 5.07266 5.14926 5.20780
5.25620 5.36805 5.39580 5.54274 5.64905 5.79328 5.82673 5.85616
5.97767 6.19264 6.43288 6.48412 6.64485 7.01668 7.56392 7.63069
9.04908
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.013097 B = 0.004778 C = 0.003889
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2137.375415 B = 5858.842437 C = 7198.127430
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.072 3.928
2 N -0.621 5.621
3 C 0.127 3.873
4 C -0.131 4.131
5 C -0.119 4.119
6 C 0.043 3.957
7 O -0.412 6.412
8 C 0.049 3.951
9 C 0.508 3.492
10 O -0.550 6.550
11 C -0.111 4.111
12 C 0.085 3.915
13 H 0.020 0.980
14 C -0.475 4.475
15 H 0.045 0.955
16 C 0.027 3.973
17 N -0.915 5.915
18 Si 0.925 3.075
19 H -0.292 1.292
20 H -0.288 1.288
21 H -0.264 1.264
22 C -0.042 4.042
23 C -0.142 4.142
24 C -0.129 4.129
25 C -0.148 4.148
26 C -0.127 4.127
27 C -0.127 4.127
28 H 0.066 0.934
29 H 0.096 0.904
30 H 0.073 0.927
31 H 0.116 0.884
32 H 0.056 0.944
33 H 0.094 0.906
34 H 0.053 0.947
35 H 0.058 0.942
36 H 0.061 0.939
37 H 0.065 0.935
38 H 0.119 0.881
39 H 0.088 0.912
40 H 0.093 0.907
41 H 0.086 0.914
42 H 0.252 0.748
43 H 0.091 0.909
44 H 0.130 0.870
45 H 0.143 0.857
46 H 0.140 0.860
47 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.610 10.267 1.235 18.724
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 N -0.356 5.356
3 C 0.004 3.996
4 C -0.132 4.132
5 C -0.176 4.176
6 C -0.034 4.034
7 O -0.331 6.331
8 C -0.028 4.028
9 C 0.297 3.703
10 O -0.426 6.426
11 C -0.151 4.151
12 C 0.065 3.935
13 H 0.038 0.962
14 C -0.513 4.513
15 H 0.063 0.937
16 C -0.172 4.172
17 N -0.555 5.555
18 Si 0.753 3.247
19 H -0.219 1.219
20 H -0.214 1.214
21 H -0.188 1.188
22 C -0.043 4.043
23 C -0.160 4.160
24 C -0.147 4.147
25 C -0.166 4.166
26 C -0.144 4.144
27 C -0.145 4.145
28 H 0.085 0.915
29 H 0.114 0.886
30 H 0.092 0.908
31 H 0.134 0.866
32 H 0.075 0.925
33 H 0.113 0.887
34 H 0.072 0.928
35 H 0.077 0.923
36 H 0.080 0.920
37 H 0.083 0.917
38 H 0.137 0.863
39 H 0.106 0.894
40 H 0.111 0.889
41 H 0.105 0.895
42 H 0.061 0.939
43 H 0.110 0.890
44 H 0.148 0.852
45 H 0.160 0.840
46 H 0.158 0.842
47 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -14.660 10.267 1.071 17.930
hybrid contribution 1.629 -0.312 -0.634 1.775
sum -13.032 9.956 0.437 16.405
Atomic orbital electron populations
1.22089 0.77495 1.04475 1.02896 1.47947 1.08083 1.04806 1.74809
1.21466 0.97749 0.85769 0.94628 1.24008 0.96650 0.95235 0.97348
1.21564 0.94750 1.02833 0.98455 1.23962 0.96298 0.86152 0.96994
1.89643 1.77677 1.18935 1.46851 1.24211 0.92162 0.95698 0.90735
1.21027 0.87946 0.86164 0.75166 1.90726 1.15940 1.87336 1.48615
1.21647 0.98516 0.92085 1.02868 1.17602 0.91366 0.87441 0.97051
0.96202 1.20915 0.96741 1.39421 0.94236 0.93721 1.25388 0.99023
0.95283 0.97508 1.70045 1.14471 1.41626 1.29380 0.86069 0.79585
0.76809 0.82233 1.21894 1.21370 1.18828 1.20548 0.92945 0.98189
0.92627 1.21078 1.00012 0.96382 0.98538 1.21275 0.97302 0.96087
1.00060 1.21249 1.00022 1.00666 0.94693 1.21361 1.00148 0.94375
0.98548 1.21017 0.97462 0.97735 0.98300 0.91518 0.88594 0.90823
0.86617 0.92517 0.88699 0.92840 0.92292 0.92047 0.91697 0.86265
0.89407 0.88903 0.89534 0.93894 0.89028 0.85212 0.83966 0.84193
0.86714
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.23 9.11 127.77 1.16 2.39 16
2 N -0.62 -16.74 2.44 -846.73 -2.06 -18.80 16
3 C 0.13 3.04 4.96 86.38 0.43 3.47 16
4 C -0.13 -3.19 1.20 -51.48 -0.06 -3.25 16
5 C -0.12 -2.30 7.67 71.98 0.55 -1.74 16
6 C 0.04 1.51 7.74 72.30 0.56 2.07 16
7 O -0.41 -13.46 12.38 -148.98 -1.84 -15.30 16
8 C 0.05 1.06 8.37 72.30 0.60 1.67 16
9 C 0.51 19.63 7.40 87.66 0.65 20.28 16
10 O -0.55 -27.39 13.17 -3.04 -0.04 -27.43 16
11 C -0.11 -4.18 3.49 29.85 0.10 -4.08 16
12 C 0.08 4.12 1.63 -12.28 -0.02 4.10 16
13 H 0.02 1.15 7.06 -2.39 -0.02 1.13 16
14 C -0.48 -25.98 6.39 25.60 0.16 -25.82 16
15 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16
16 C 0.03 1.55 5.45 84.66 0.46 2.02 16
17 N -0.92 -56.51 12.91 21.45 0.28 -56.23 16
18 Si 0.93 47.54 29.54 68.60 2.03 49.56 16
19 H -0.29 -15.44 7.11 99.48 0.71 -14.73 16
20 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16
21 H -0.26 -12.85 7.11 99.48 0.71 -12.15 16
22 C -0.04 -1.88 4.77 -19.87 -0.09 -1.98 16
23 C -0.14 -6.10 9.67 22.27 0.22 -5.89 16
24 C -0.13 -4.55 10.05 22.27 0.22 -4.33 16
25 C -0.15 -4.61 10.05 22.27 0.22 -4.38 16
26 C -0.13 -4.08 10.05 22.27 0.22 -3.85 16
27 C -0.13 -4.90 8.86 22.27 0.20 -4.71 16
28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16
29 H 0.10 1.08 6.36 -2.39 -0.02 1.06 16
30 H 0.07 1.27 6.44 -2.39 -0.02 1.26 16
31 H 0.12 1.79 8.07 -2.39 -0.02 1.77 16
32 H 0.06 1.72 7.26 -2.39 -0.02 1.70 16
33 H 0.09 1.15 7.73 -2.39 -0.02 1.13 16
34 H 0.05 1.12 8.09 -2.39 -0.02 1.10 16
35 H 0.06 1.25 6.71 -2.39 -0.02 1.24 16
36 H 0.06 2.57 7.22 -2.39 -0.02 2.55 16
37 H 0.06 2.50 8.10 -2.39 -0.02 2.48 16
38 H 0.12 1.83 8.10 -2.39 -0.02 1.81 16
39 H 0.09 1.74 8.10 -2.39 -0.02 1.72 16
40 H 0.09 3.13 7.00 -2.39 -0.02 3.12 16
41 H 0.09 2.82 8.11 -2.38 -0.02 2.80 16
42 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16
43 H 0.09 4.20 7.95 -2.91 -0.02 4.18 16
44 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16
45 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16
46 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16
47 H 0.11 4.26 7.75 -2.91 -0.02 4.24 16
Total: -1.00 -76.24 377.10 4.89 -71.35
By element:
Atomic # 1 Polarization: 19.95 SS G_CDS: 0.94 Total: 20.89 kcal
Atomic # 6 Polarization: -29.64 SS G_CDS: 5.59 Total: -24.04 kcal
Atomic # 7 Polarization: -73.24 SS G_CDS: -1.79 Total: -75.03 kcal
Atomic # 8 Polarization: -40.85 SS G_CDS: -1.88 Total: -42.73 kcal
Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.56 kcal
Total: -76.24 4.89 -71.35 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000600304683.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 31.005 kcal
(2) G-P(sol) polarization free energy of solvation -76.243 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.238 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.349 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.344 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds