Wall clock time and date at job start Tue Mar 31 2020 11:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46498 * 120.00028 * 2 1 4 4 C 1.53009 * 109.46732 * 269.99516 * 3 2 1 5 5 C 1.53001 * 112.99650 * 50.33745 * 4 3 2 6 6 C 1.54034 * 113.81655 * 278.50743 * 4 3 2 7 7 O 1.44439 * 85.42546 * 223.23718 * 6 4 3 8 8 C 1.44180 * 93.38020 * 24.09267 * 7 6 4 9 9 C 1.34777 * 119.99410 * 179.97438 * 2 1 3 10 10 O 1.21284 * 119.99926 * 179.97438 * 9 2 1 11 11 C 1.50696 * 120.00349 * 0.02562 * 9 2 1 12 12 C 1.53007 * 109.47286 * 179.97438 * 11 9 2 13 13 H 1.08994 * 109.46912 * 54.99618 * 12 11 9 14 14 C 1.50702 * 109.46514 * 294.99503 * 12 11 9 15 15 H 1.07995 * 120.00271 * 328.63143 * 14 12 11 16 16 C 1.37881 * 119.99449 * 148.63586 * 14 12 11 17 17 N 1.31510 * 119.99956 * 5.84438 * 16 14 12 18 18 Si 1.86804 * 119.99699 * 185.84295 * 16 14 12 19 19 H 1.48494 * 109.47020 * 90.00239 * 18 16 14 20 20 H 1.48500 * 109.46954 * 210.00175 * 18 16 14 21 21 H 1.48499 * 109.46841 * 329.99961 * 18 16 14 22 22 C 1.50697 * 109.47032 * 174.99785 * 12 11 9 23 23 C 1.38238 * 119.99613 * 242.96223 * 22 12 11 24 24 C 1.38237 * 119.99605 * 179.97438 * 23 22 12 25 25 C 1.38232 * 120.00396 * 359.97176 * 24 23 22 26 26 C 1.38241 * 119.99821 * 0.02562 * 25 24 23 27 27 C 1.38230 * 120.00134 * 62.98341 * 22 12 11 28 28 H 1.09001 * 109.47211 * 270.00771 * 1 2 3 29 29 H 1.09003 * 109.47017 * 30.00189 * 1 2 3 30 30 H 1.08997 * 109.47270 * 150.00268 * 1 2 3 31 31 H 1.08996 * 109.47575 * 29.99703 * 3 2 1 32 32 H 1.08997 * 109.46755 * 149.99963 * 3 2 1 33 33 H 1.08999 * 109.47104 * 60.00042 * 5 4 3 34 34 H 1.09002 * 109.46745 * 179.97438 * 5 4 3 35 35 H 1.08999 * 109.47214 * 299.99741 * 5 4 3 36 36 H 1.08996 * 113.86640 * 337.34974 * 6 4 3 37 37 H 1.09001 * 113.86263 * 109.04945 * 6 4 3 38 38 H 1.09000 * 113.86958 * 221.76737 * 8 7 6 39 39 H 1.09003 * 113.98349 * 90.06967 * 8 7 6 40 40 H 1.08998 * 109.47526 * 59.99135 * 11 9 2 41 41 H 1.09006 * 109.46842 * 299.99258 * 11 9 2 42 42 H 0.97007 * 119.99631 * 179.97438 * 17 16 14 43 43 H 1.07995 * 120.00374 * 0.02562 * 23 22 12 44 44 H 1.08000 * 119.99634 * 179.97438 * 24 23 22 45 45 H 1.07996 * 119.99909 * 179.72572 * 25 24 23 46 46 H 1.07992 * 119.99963 * 179.97438 * 26 25 24 47 47 H 1.07996 * 120.00454 * 0.02562 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 6 1.1896 1.6909 -2.3059 6 6 3.6650 1.0227 -2.0984 7 8 3.9872 2.3352 -2.6082 8 6 3.2662 3.0130 -1.5596 9 6 2.1388 -1.1673 0.0005 10 8 3.3517 -1.1674 0.0001 11 6 1.3853 -2.4723 0.0005 12 6 2.3795 -3.6354 0.0005 13 1 3.0636 -3.5285 0.8423 14 6 3.1622 -3.6270 -1.2873 15 1 2.7035 -3.2653 -2.1956 16 6 4.4639 -4.0812 -1.3057 17 7 4.9850 -4.6276 -0.2290 18 14 5.4872 -3.9203 -2.8602 19 1 6.2034 -2.6196 -2.8490 20 1 6.4741 -5.0283 -2.9200 21 1 4.5975 -3.9854 -4.0474 22 6 1.6300 -4.9368 0.1244 23 6 1.8277 -5.7459 1.2277 24 6 1.1398 -6.9395 1.3416 25 6 0.2538 -7.3238 0.3526 26 6 0.0561 -6.5147 -0.7507 27 6 0.7452 -5.3218 -0.8654 28 1 -0.3634 0.0001 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5138 31 1 1.6086 2.0284 0.5138 32 1 3.1499 1.1383 0.5138 33 1 0.4476 2.3659 -1.8793 34 1 1.4358 2.0144 -3.3172 35 1 0.7855 0.6790 -2.3359 36 1 4.3922 0.6360 -1.3845 37 1 3.3983 0.3014 -2.8709 38 1 2.6838 3.8670 -1.9057 39 1 3.8697 3.2366 -0.6799 40 1 0.7589 -2.5302 -0.8896 41 1 0.7584 -2.5298 0.8904 42 1 5.9007 -4.9474 -0.2421 43 1 2.5190 -5.4451 2.0010 44 1 1.2946 -7.5718 2.2034 45 1 -0.2802 -8.2585 0.4395 46 1 -0.6358 -6.8151 -1.5235 47 1 0.5913 -4.6901 -1.7277 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600304683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:50 Heat of formation + Delta-G solvation = -40.344203 kcal Electronic energy + Delta-G solvation = -27695.985160 eV Core-core repulsion = 24037.315984 eV Total energy + Delta-G solvation = -3658.669176 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.85943 -40.50316 -39.64544 -36.66114 -35.71992 -33.58172 -32.95454 -31.48120 -30.39189 -28.88453 -27.68885 -27.55333 -26.73002 -25.88009 -24.11593 -23.09677 -21.44915 -20.10425 -19.54733 -18.48436 -17.96750 -17.28524 -17.25454 -17.15896 -16.85843 -16.53891 -16.21606 -15.68508 -15.57288 -15.37426 -14.61415 -14.43015 -14.25502 -14.06370 -13.93690 -13.67849 -13.52451 -13.47039 -13.21833 -13.14747 -12.92684 -12.89613 -12.82917 -12.51116 -12.50295 -12.30838 -11.82625 -11.71361 -11.62418 -11.47202 -11.29525 -10.93267 -10.72466 -10.53957 -10.25680 -9.52144 -9.36522 -9.16589 -8.04567 -6.05675 0.79939 0.86466 1.32080 1.37895 1.40657 2.02178 2.24496 2.44368 2.75519 3.19802 3.20936 3.36718 3.79072 4.01524 4.10564 4.14197 4.27073 4.36910 4.41139 4.43611 4.44940 4.51618 4.55998 4.57547 4.63632 4.70226 4.76565 4.83197 4.87584 4.92598 4.95921 4.97522 5.01643 5.07266 5.14926 5.20780 5.25620 5.36805 5.39580 5.54274 5.64905 5.79328 5.82673 5.85616 5.97767 6.19264 6.43288 6.48412 6.64485 7.01668 7.56392 7.63069 9.04908 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013097 B = 0.004778 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.375415 B = 5858.842437 C = 7198.127430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.621 5.621 3 C 0.127 3.873 4 C -0.131 4.131 5 C -0.119 4.119 6 C 0.043 3.957 7 O -0.412 6.412 8 C 0.049 3.951 9 C 0.508 3.492 10 O -0.550 6.550 11 C -0.111 4.111 12 C 0.085 3.915 13 H 0.020 0.980 14 C -0.475 4.475 15 H 0.045 0.955 16 C 0.027 3.973 17 N -0.915 5.915 18 Si 0.925 3.075 19 H -0.292 1.292 20 H -0.288 1.288 21 H -0.264 1.264 22 C -0.042 4.042 23 C -0.142 4.142 24 C -0.129 4.129 25 C -0.148 4.148 26 C -0.127 4.127 27 C -0.127 4.127 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.056 0.944 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.119 0.881 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.252 0.748 43 H 0.091 0.909 44 H 0.130 0.870 45 H 0.143 0.857 46 H 0.140 0.860 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.610 10.267 1.235 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.356 5.356 3 C 0.004 3.996 4 C -0.132 4.132 5 C -0.176 4.176 6 C -0.034 4.034 7 O -0.331 6.331 8 C -0.028 4.028 9 C 0.297 3.703 10 O -0.426 6.426 11 C -0.151 4.151 12 C 0.065 3.935 13 H 0.038 0.962 14 C -0.513 4.513 15 H 0.063 0.937 16 C -0.172 4.172 17 N -0.555 5.555 18 Si 0.753 3.247 19 H -0.219 1.219 20 H -0.214 1.214 21 H -0.188 1.188 22 C -0.043 4.043 23 C -0.160 4.160 24 C -0.147 4.147 25 C -0.166 4.166 26 C -0.144 4.144 27 C -0.145 4.145 28 H 0.085 0.915 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.137 0.863 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.105 0.895 42 H 0.061 0.939 43 H 0.110 0.890 44 H 0.148 0.852 45 H 0.160 0.840 46 H 0.158 0.842 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.660 10.267 1.071 17.930 hybrid contribution 1.629 -0.312 -0.634 1.775 sum -13.032 9.956 0.437 16.405 Atomic orbital electron populations 1.22089 0.77495 1.04475 1.02896 1.47947 1.08083 1.04806 1.74809 1.21466 0.97749 0.85769 0.94628 1.24008 0.96650 0.95235 0.97348 1.21564 0.94750 1.02833 0.98455 1.23962 0.96298 0.86152 0.96994 1.89643 1.77677 1.18935 1.46851 1.24211 0.92162 0.95698 0.90735 1.21027 0.87946 0.86164 0.75166 1.90726 1.15940 1.87336 1.48615 1.21647 0.98516 0.92085 1.02868 1.17602 0.91366 0.87441 0.97051 0.96202 1.20915 0.96741 1.39421 0.94236 0.93721 1.25388 0.99023 0.95283 0.97508 1.70045 1.14471 1.41626 1.29380 0.86069 0.79585 0.76809 0.82233 1.21894 1.21370 1.18828 1.20548 0.92945 0.98189 0.92627 1.21078 1.00012 0.96382 0.98538 1.21275 0.97302 0.96087 1.00060 1.21249 1.00022 1.00666 0.94693 1.21361 1.00148 0.94375 0.98548 1.21017 0.97462 0.97735 0.98300 0.91518 0.88594 0.90823 0.86617 0.92517 0.88699 0.92840 0.92292 0.92047 0.91697 0.86265 0.89407 0.88903 0.89534 0.93894 0.89028 0.85212 0.83966 0.84193 0.86714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.23 9.11 127.77 1.16 2.39 16 2 N -0.62 -16.74 2.44 -846.73 -2.06 -18.80 16 3 C 0.13 3.04 4.96 86.38 0.43 3.47 16 4 C -0.13 -3.19 1.20 -51.48 -0.06 -3.25 16 5 C -0.12 -2.30 7.67 71.98 0.55 -1.74 16 6 C 0.04 1.51 7.74 72.30 0.56 2.07 16 7 O -0.41 -13.46 12.38 -148.98 -1.84 -15.30 16 8 C 0.05 1.06 8.37 72.30 0.60 1.67 16 9 C 0.51 19.63 7.40 87.66 0.65 20.28 16 10 O -0.55 -27.39 13.17 -3.04 -0.04 -27.43 16 11 C -0.11 -4.18 3.49 29.85 0.10 -4.08 16 12 C 0.08 4.12 1.63 -12.28 -0.02 4.10 16 13 H 0.02 1.15 7.06 -2.39 -0.02 1.13 16 14 C -0.48 -25.98 6.39 25.60 0.16 -25.82 16 15 H 0.04 2.42 7.82 -2.91 -0.02 2.40 16 16 C 0.03 1.55 5.45 84.66 0.46 2.02 16 17 N -0.92 -56.51 12.91 21.45 0.28 -56.23 16 18 Si 0.93 47.54 29.54 68.60 2.03 49.56 16 19 H -0.29 -15.44 7.11 99.48 0.71 -14.73 16 20 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 21 H -0.26 -12.85 7.11 99.48 0.71 -12.15 16 22 C -0.04 -1.88 4.77 -19.87 -0.09 -1.98 16 23 C -0.14 -6.10 9.67 22.27 0.22 -5.89 16 24 C -0.13 -4.55 10.05 22.27 0.22 -4.33 16 25 C -0.15 -4.61 10.05 22.27 0.22 -4.38 16 26 C -0.13 -4.08 10.05 22.27 0.22 -3.85 16 27 C -0.13 -4.90 8.86 22.27 0.20 -4.71 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.10 1.08 6.36 -2.39 -0.02 1.06 16 30 H 0.07 1.27 6.44 -2.39 -0.02 1.26 16 31 H 0.12 1.79 8.07 -2.39 -0.02 1.77 16 32 H 0.06 1.72 7.26 -2.39 -0.02 1.70 16 33 H 0.09 1.15 7.73 -2.39 -0.02 1.13 16 34 H 0.05 1.12 8.09 -2.39 -0.02 1.10 16 35 H 0.06 1.25 6.71 -2.39 -0.02 1.24 16 36 H 0.06 2.57 7.22 -2.39 -0.02 2.55 16 37 H 0.06 2.50 8.10 -2.39 -0.02 2.48 16 38 H 0.12 1.83 8.10 -2.39 -0.02 1.81 16 39 H 0.09 1.74 8.10 -2.39 -0.02 1.72 16 40 H 0.09 3.13 7.00 -2.39 -0.02 3.12 16 41 H 0.09 2.82 8.11 -2.38 -0.02 2.80 16 42 H 0.25 15.16 8.31 -92.70 -0.77 14.39 16 43 H 0.09 4.20 7.95 -2.91 -0.02 4.18 16 44 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 45 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 46 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 47 H 0.11 4.26 7.75 -2.91 -0.02 4.24 16 Total: -1.00 -76.24 377.10 4.89 -71.35 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.94 Total: 20.89 kcal Atomic # 6 Polarization: -29.64 SS G_CDS: 5.59 Total: -24.04 kcal Atomic # 7 Polarization: -73.24 SS G_CDS: -1.79 Total: -75.03 kcal Atomic # 8 Polarization: -40.85 SS G_CDS: -1.88 Total: -42.73 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 2.03 Total: 49.56 kcal Total: -76.24 4.89 -71.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600304683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.005 kcal (2) G-P(sol) polarization free energy of solvation -76.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds