Wall clock time and date at job start Tue Mar 31 2020 12:19:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46828 * 2 1 4 4 C 1.52994 * 109.44977 * 303.51517 * 3 2 1 5 5 O 1.42896 * 109.47519 * 305.03461 * 4 3 2 6 6 C 1.53036 * 109.46136 * 63.48734 * 3 2 1 7 7 C 1.53196 * 109.31573 * 58.64781 * 6 3 2 8 8 N 1.46932 * 108.77034 * 54.63787 * 7 6 3 9 9 C 1.34780 * 120.62729 * 126.36923 * 8 7 6 10 10 O 1.21609 * 119.99827 * 354.23899 * 9 8 7 11 11 C 1.47433 * 119.99858 * 174.23874 * 9 8 7 12 12 C 1.39223 * 120.27870 * 314.06405 * 11 9 8 13 13 C 1.38228 * 120.09062 * 179.72623 * 12 11 9 14 14 C 1.38829 * 120.67116 * 359.97438 * 13 12 11 15 15 C 1.37593 * 120.57378 * 0.02562 * 14 13 12 16 16 C 1.40709 * 119.88251 * 0.02562 * 15 14 13 17 17 C 1.40887 * 120.32922 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00148 * 149.92996 * 17 16 15 19 19 C 1.40276 * 119.99539 * 329.91604 * 17 16 15 20 20 N 1.30626 * 120.00425 * 344.93098 * 19 17 16 21 21 Si 1.86799 * 119.99650 * 164.92571 * 19 17 16 22 22 H 1.48496 * 109.47277 * 90.00407 * 21 19 17 23 23 H 1.48504 * 109.47209 * 210.00217 * 21 19 17 24 24 H 1.48509 * 109.47341 * 330.00111 * 21 19 17 25 25 C 1.46920 * 118.74062 * 306.64130 * 8 7 6 26 26 C 1.52761 * 109.00733 * 53.31152 * 25 8 7 27 27 H 1.09008 * 109.47008 * 304.93448 * 1 2 3 28 28 H 1.08996 * 109.47501 * 64.93954 * 1 2 3 29 29 H 1.09006 * 109.46921 * 184.94367 * 1 2 3 30 30 H 1.09000 * 109.46638 * 239.99939 * 2 1 3 31 31 H 1.08998 * 109.47331 * 120.00523 * 2 1 3 32 32 H 1.08999 * 109.46925 * 65.03486 * 4 3 2 33 33 H 1.09003 * 109.47296 * 185.03392 * 4 3 2 34 34 H 0.96697 * 114.00305 * 180.02562 * 5 4 3 35 35 H 1.09005 * 109.49607 * 298.69650 * 6 3 2 36 36 H 1.08999 * 109.50216 * 178.60313 * 6 3 2 37 37 H 1.08995 * 109.58755 * 294.85422 * 7 6 3 38 38 H 1.08995 * 109.58760 * 174.42182 * 7 6 3 39 39 H 1.08004 * 119.95950 * 359.74633 * 12 11 9 40 40 H 1.07991 * 119.66202 * 179.97438 * 13 12 11 41 41 H 1.08001 * 119.71111 * 179.97438 * 14 13 12 42 42 H 1.07998 * 120.05852 * 180.02562 * 15 14 13 43 43 H 0.97000 * 120.00442 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.58868 * 173.14490 * 25 8 7 45 45 H 1.09002 * 109.58968 * 293.57154 * 25 8 7 46 46 H 1.09000 * 109.56608 * 185.55155 * 26 25 8 47 47 H 1.09000 * 109.36127 * 65.50210 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4588 2.1883 -1.2028 5 8 1.7678 1.4739 -2.4011 6 6 1.6026 2.1379 1.2912 7 6 2.1576 1.3686 2.4941 8 7 3.6132 1.2389 2.3418 9 6 4.4447 1.6385 3.3244 10 8 4.0003 2.2067 4.3034 11 6 5.8931 1.3867 3.2123 12 6 6.3595 0.1369 2.8139 13 6 7.7181 -0.0932 2.7046 14 6 8.6318 0.9128 2.9883 15 6 8.2012 2.1582 3.3843 16 6 6.8235 2.4181 3.5044 17 6 6.3721 3.6900 3.9086 18 1 5.4196 4.0609 3.5599 19 6 7.1598 4.4745 4.7641 20 7 8.1523 3.9327 5.4181 21 14 6.7895 6.2941 4.9678 22 1 5.8297 6.4818 6.0852 23 1 8.0472 7.0247 5.2675 24 1 6.1973 6.8223 3.7125 25 6 4.1453 0.6711 1.0956 26 6 3.5678 1.4431 -0.0893 27 1 -0.3633 0.5885 0.8426 28 1 -0.3634 0.4353 -0.9309 29 1 -0.3633 -1.0239 0.0886 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 0.3769 2.2653 -1.0944 33 1 1.8908 3.1878 -1.2540 34 1 1.4297 1.8903 -3.2056 35 1 0.5140 2.1579 1.3429 36 1 1.9866 3.1580 1.3032 37 1 1.7048 0.3779 2.5348 38 1 1.9332 1.9131 3.4112 39 1 5.6589 -0.6539 2.5896 40 1 8.0723 -1.0654 2.3955 41 1 9.6899 0.7159 2.8982 42 1 8.9193 2.9348 3.6024 43 1 8.6967 4.4751 6.0100 44 1 5.2320 0.7556 1.0903 45 1 3.8580 -0.3776 1.0199 46 1 3.8780 0.9685 -1.0203 47 1 3.9333 2.4697 -0.0645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601392493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:35 Heat of formation + Delta-G solvation = -75.456550 kcal Electronic energy + Delta-G solvation = -27892.316897 eV Core-core repulsion = 24232.125135 eV Total energy + Delta-G solvation = -3660.191762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.24239 -38.46517 -36.85770 -36.01077 -34.00620 -33.52975 -31.16478 -30.65073 -29.88237 -29.26022 -27.11707 -25.39347 -24.02521 -23.31102 -22.71156 -21.37036 -20.92669 -19.12944 -17.77178 -17.40324 -17.16959 -16.39682 -15.53775 -15.36710 -15.22580 -15.03490 -14.52947 -14.29456 -14.18812 -13.71533 -13.45957 -13.31868 -12.79747 -12.61800 -12.58877 -12.45229 -12.24297 -12.01619 -11.74275 -11.66879 -11.63033 -11.17073 -11.08728 -11.01871 -10.91030 -10.79012 -10.50208 -10.37725 -10.26526 -10.14558 -9.95146 -9.90003 -9.62516 -9.22911 -8.62476 -7.96509 -7.49330 -7.42857 -6.82482 -4.40234 2.50052 2.81585 3.07133 3.12161 3.21824 3.69475 3.93559 3.96252 4.14102 4.60147 4.70226 4.78469 4.88232 5.16364 5.26435 5.33303 5.37190 5.46011 5.51290 5.57100 5.59082 5.62709 5.69798 5.82816 5.92554 5.99591 6.04010 6.09440 6.12819 6.14048 6.24236 6.28308 6.31944 6.37275 6.43760 6.55124 6.62260 6.98211 7.10187 7.19490 7.24427 7.46640 7.50797 7.68912 7.87102 7.97696 8.14752 8.26974 8.55915 8.78959 8.86639 9.29106 10.13051 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015038 B = 0.004262 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.454898 B = 6567.958116 C = 7361.794073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.053 4.053 4 C 0.086 3.914 5 O -0.567 6.567 6 C -0.124 4.124 7 C 0.115 3.885 8 N -0.621 5.621 9 C 0.582 3.418 10 O -0.540 6.540 11 C -0.255 4.255 12 C -0.058 4.058 13 C -0.248 4.248 14 C -0.093 4.093 15 C -0.156 4.156 16 C 0.149 3.851 17 C -0.430 4.430 18 H 0.081 0.919 19 C 0.078 3.922 20 N -0.785 5.785 21 Si 0.911 3.089 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.260 1.260 25 C 0.108 3.892 26 C -0.120 4.120 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.374 0.626 35 H 0.071 0.929 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.090 0.910 42 H 0.116 0.884 43 H 0.283 0.717 44 H 0.101 0.899 45 H 0.057 0.943 46 H 0.077 0.923 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.762 -3.370 -12.019 16.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.053 4.053 4 C 0.008 3.992 5 O -0.372 6.372 6 C -0.163 4.163 7 C -0.008 4.008 8 N -0.357 5.357 9 C 0.375 3.625 10 O -0.416 6.416 11 C -0.260 4.260 12 C -0.077 4.077 13 C -0.268 4.268 14 C -0.112 4.112 15 C -0.175 4.175 16 C 0.145 3.855 17 C -0.458 4.458 18 H 0.099 0.901 19 C -0.142 4.142 20 N -0.409 5.409 21 Si 0.735 3.265 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.184 1.184 25 C -0.016 4.016 26 C -0.158 4.158 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.220 0.780 35 H 0.090 0.910 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.134 0.866 43 H 0.094 0.906 44 H 0.119 0.881 45 H 0.075 0.925 46 H 0.096 0.904 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -10.522 -3.399 -10.843 15.487 hybrid contribution -0.406 1.140 -0.245 1.234 sum -10.928 -2.259 -11.088 15.731 Atomic orbital electron populations 1.21855 0.96379 1.01251 1.01462 1.21559 0.95411 0.95584 1.02352 1.20553 0.95997 0.95808 0.92928 1.22255 0.98015 0.94100 0.84842 1.86490 1.81172 1.53266 1.16244 1.21954 1.00392 0.99918 0.94003 1.21385 0.81243 0.99598 0.98534 1.48112 1.05380 1.64875 1.17333 1.18551 0.86571 0.76084 0.81298 1.90675 1.77822 1.41521 1.31628 1.19409 0.90847 0.95790 1.19917 1.20637 0.94938 0.94880 0.97229 1.20259 0.92946 0.98686 1.14866 1.20772 0.97227 0.94121 0.99035 1.21252 0.95874 0.96405 1.03998 1.17364 0.90575 0.91208 0.86362 1.19588 1.03788 0.99250 1.23171 0.90107 1.25967 0.93493 1.00849 0.93853 1.69718 1.14752 1.37748 1.18720 0.86266 0.78763 0.81555 0.79950 1.19219 1.20035 1.18419 1.21749 1.00877 0.95961 0.82974 1.21863 0.93710 1.01584 0.98689 0.92690 0.92886 0.93175 0.91288 0.91568 0.93712 0.93923 0.78049 0.91034 0.91381 0.92263 0.89268 0.88957 0.89124 0.89162 0.86587 0.90601 0.88115 0.92472 0.90443 0.91686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.15 37.16 0.34 -1.10 16 2 C -0.11 -1.24 3.96 -26.73 -0.11 -1.34 16 3 C -0.05 -0.62 0.38 -154.47 -0.06 -0.68 16 4 C 0.09 0.86 5.31 37.15 0.20 1.05 16 5 O -0.57 -5.53 12.36 -35.23 -0.44 -5.97 16 6 C -0.12 -1.57 4.60 -26.61 -0.12 -1.70 16 7 C 0.12 1.78 5.98 -3.71 -0.02 1.76 16 8 N -0.62 -11.43 2.98 -174.30 -0.52 -11.94 16 9 C 0.58 13.70 6.61 -12.51 -0.08 13.62 16 10 O -0.54 -14.54 15.04 5.27 0.08 -14.46 16 11 C -0.25 -6.26 4.96 -104.37 -0.52 -6.78 16 12 C -0.06 -1.26 7.47 -39.22 -0.29 -1.56 16 13 C -0.25 -5.31 10.03 -39.37 -0.39 -5.71 16 14 C -0.09 -2.10 10.01 -39.60 -0.40 -2.49 16 15 C -0.16 -3.96 8.65 -38.88 -0.34 -4.30 16 16 C 0.15 3.98 5.53 -106.54 -0.59 3.39 16 17 C -0.43 -11.76 7.80 -37.81 -0.29 -12.06 16 18 H 0.08 2.26 7.01 -52.49 -0.37 1.90 16 19 C 0.08 2.00 5.16 -17.30 -0.09 1.91 16 20 N -0.78 -20.49 11.18 55.56 0.62 -19.87 16 21 Si 0.91 19.40 29.59 -169.99 -5.03 14.37 16 22 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 25 C 0.11 1.69 4.64 -3.94 -0.02 1.68 16 26 C -0.12 -1.65 4.80 -26.83 -0.13 -1.78 16 27 H 0.05 0.50 6.32 -51.92 -0.33 0.17 16 28 H 0.05 0.48 6.77 -51.93 -0.35 0.13 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 31 H 0.07 0.79 5.00 -51.93 -0.26 0.53 16 32 H 0.04 0.39 6.78 -51.93 -0.35 0.04 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.37 2.03 9.12 45.56 0.42 2.45 16 35 H 0.07 0.75 6.48 -51.93 -0.34 0.42 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.06 0.81 6.61 -51.93 -0.34 0.47 16 38 H 0.09 1.55 6.99 -51.93 -0.36 1.18 16 39 H 0.09 1.77 7.15 -52.48 -0.38 1.39 16 40 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.12 3.01 6.49 -52.49 -0.34 2.67 16 43 H 0.28 6.69 8.29 -40.82 -0.34 6.35 16 44 H 0.10 1.78 5.05 -51.93 -0.26 1.52 16 45 H 0.06 0.81 6.78 -51.93 -0.35 0.46 16 46 H 0.08 1.02 7.79 -51.93 -0.40 0.61 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 356.50 15.07 5.37 5.37 Total: -1.00 -30.82 356.50 -8.92 -39.73 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: -6.09 Total: 8.85 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -2.91 Total: -16.08 kcal Atomic # 7 Polarization: -31.92 SS G_CDS: 0.10 Total: -31.82 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: -0.36 Total: -20.43 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.82 -8.92 -39.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601392493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.723 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds