Wall clock time and date at job start Tue Mar 31 2020 12:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46828 * 2 1 4 4 C 1.52994 * 109.44977 * 303.51517 * 3 2 1 5 5 O 1.42896 * 109.47519 * 305.03461 * 4 3 2 6 6 C 1.53036 * 109.46136 * 63.48734 * 3 2 1 7 7 C 1.53196 * 109.31573 * 58.64781 * 6 3 2 8 8 N 1.46932 * 108.77034 * 54.63787 * 7 6 3 9 9 C 1.34780 * 120.62729 * 126.36923 * 8 7 6 10 10 O 1.21609 * 119.99827 * 354.23899 * 9 8 7 11 11 C 1.47433 * 119.99858 * 174.23874 * 9 8 7 12 12 C 1.39223 * 120.27870 * 314.06405 * 11 9 8 13 13 C 1.38228 * 120.09062 * 179.72623 * 12 11 9 14 14 C 1.38829 * 120.67116 * 359.97438 * 13 12 11 15 15 C 1.37593 * 120.57378 * 0.02562 * 14 13 12 16 16 C 1.40709 * 119.88251 * 0.02562 * 15 14 13 17 17 C 1.40887 * 120.32922 * 180.02562 * 16 15 14 18 18 H 1.08001 * 120.00148 * 149.92996 * 17 16 15 19 19 C 1.40276 * 119.99539 * 329.91604 * 17 16 15 20 20 N 1.30626 * 120.00425 * 344.93098 * 19 17 16 21 21 Si 1.86799 * 119.99650 * 164.92571 * 19 17 16 22 22 H 1.48496 * 109.47277 * 90.00407 * 21 19 17 23 23 H 1.48504 * 109.47209 * 210.00217 * 21 19 17 24 24 H 1.48509 * 109.47341 * 330.00111 * 21 19 17 25 25 C 1.46920 * 118.74062 * 306.64130 * 8 7 6 26 26 C 1.52761 * 109.00733 * 53.31152 * 25 8 7 27 27 H 1.09008 * 109.47008 * 304.93448 * 1 2 3 28 28 H 1.08996 * 109.47501 * 64.93954 * 1 2 3 29 29 H 1.09006 * 109.46921 * 184.94367 * 1 2 3 30 30 H 1.09000 * 109.46638 * 239.99939 * 2 1 3 31 31 H 1.08998 * 109.47331 * 120.00523 * 2 1 3 32 32 H 1.08999 * 109.46925 * 65.03486 * 4 3 2 33 33 H 1.09003 * 109.47296 * 185.03392 * 4 3 2 34 34 H 0.96697 * 114.00305 * 180.02562 * 5 4 3 35 35 H 1.09005 * 109.49607 * 298.69650 * 6 3 2 36 36 H 1.08999 * 109.50216 * 178.60313 * 6 3 2 37 37 H 1.08995 * 109.58755 * 294.85422 * 7 6 3 38 38 H 1.08995 * 109.58760 * 174.42182 * 7 6 3 39 39 H 1.08004 * 119.95950 * 359.74633 * 12 11 9 40 40 H 1.07991 * 119.66202 * 179.97438 * 13 12 11 41 41 H 1.08001 * 119.71111 * 179.97438 * 14 13 12 42 42 H 1.07998 * 120.05852 * 180.02562 * 15 14 13 43 43 H 0.97000 * 120.00442 * 180.02562 * 20 19 17 44 44 H 1.08996 * 109.58868 * 173.14490 * 25 8 7 45 45 H 1.09002 * 109.58968 * 293.57154 * 25 8 7 46 46 H 1.09000 * 109.56608 * 185.55155 * 26 25 8 47 47 H 1.09000 * 109.36127 * 65.50210 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4588 2.1883 -1.2028 5 8 1.7678 1.4739 -2.4011 6 6 1.6026 2.1379 1.2912 7 6 2.1576 1.3686 2.4941 8 7 3.6132 1.2389 2.3418 9 6 4.4447 1.6385 3.3244 10 8 4.0003 2.2067 4.3034 11 6 5.8931 1.3867 3.2123 12 6 6.3595 0.1369 2.8139 13 6 7.7181 -0.0932 2.7046 14 6 8.6318 0.9128 2.9883 15 6 8.2012 2.1582 3.3843 16 6 6.8235 2.4181 3.5044 17 6 6.3721 3.6900 3.9086 18 1 5.4196 4.0609 3.5599 19 6 7.1598 4.4745 4.7641 20 7 8.1523 3.9327 5.4181 21 14 6.7895 6.2941 4.9678 22 1 5.8297 6.4818 6.0852 23 1 8.0472 7.0247 5.2675 24 1 6.1973 6.8223 3.7125 25 6 4.1453 0.6711 1.0956 26 6 3.5678 1.4431 -0.0893 27 1 -0.3633 0.5885 0.8426 28 1 -0.3634 0.4353 -0.9309 29 1 -0.3633 -1.0239 0.0886 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 0.3769 2.2653 -1.0944 33 1 1.8908 3.1878 -1.2540 34 1 1.4297 1.8903 -3.2056 35 1 0.5140 2.1579 1.3429 36 1 1.9866 3.1580 1.3032 37 1 1.7048 0.3779 2.5348 38 1 1.9332 1.9131 3.4112 39 1 5.6589 -0.6539 2.5896 40 1 8.0723 -1.0654 2.3955 41 1 9.6899 0.7159 2.8982 42 1 8.9193 2.9348 3.6024 43 1 8.6967 4.4751 6.0100 44 1 5.2320 0.7556 1.0903 45 1 3.8580 -0.3776 1.0199 46 1 3.8780 0.9685 -1.0203 47 1 3.9333 2.4697 -0.0645 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601392493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:34 Heat of formation + Delta-G solvation = -94.991236 kcal Electronic energy + Delta-G solvation = -27893.163984 eV Core-core repulsion = 24232.125135 eV Total energy + Delta-G solvation = -3661.038849 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.57880 -39.94135 -38.54820 -37.13806 -35.69207 -34.98421 -32.51253 -31.87799 -31.64833 -30.79092 -28.29672 -27.23405 -24.98458 -24.73520 -23.89694 -22.92405 -22.70878 -20.65773 -19.27327 -18.76948 -18.19028 -17.91011 -17.29625 -16.85331 -16.39987 -16.21759 -15.94572 -15.82832 -15.38820 -15.20613 -14.97082 -14.46868 -14.37048 -14.11487 -14.03876 -13.72247 -13.49895 -13.38937 -13.11003 -13.00648 -12.89912 -12.83469 -12.72489 -12.52343 -12.22528 -12.15568 -11.88044 -11.80945 -11.51022 -11.36014 -11.24405 -11.15684 -11.10912 -10.72314 -10.44643 -9.53354 -9.31418 -9.27777 -8.71671 -6.39554 0.64254 1.00043 1.30389 1.42608 1.47736 2.06089 2.16727 2.31226 2.70487 3.32796 3.65097 3.71567 3.73556 3.97602 4.11675 4.17213 4.26304 4.33467 4.39215 4.42198 4.55807 4.57186 4.59469 4.66445 4.69836 4.74375 4.81027 4.87261 4.90942 5.01778 5.04548 5.06396 5.07490 5.18423 5.21210 5.30490 5.34103 5.39915 5.44374 5.57786 5.62876 5.79171 5.86173 6.00188 6.09495 6.28411 6.52208 6.66283 6.85842 6.94268 6.99189 7.51818 8.26370 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015038 B = 0.004262 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.454898 B = 6567.958116 C = 7361.794073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.050 4.050 4 C 0.091 3.909 5 O -0.580 6.580 6 C -0.117 4.117 7 C 0.111 3.889 8 N -0.612 5.612 9 C 0.574 3.426 10 O -0.588 6.588 11 C -0.271 4.271 12 C -0.055 4.055 13 C -0.236 4.236 14 C -0.091 4.091 15 C -0.182 4.182 16 C 0.118 3.882 17 C -0.468 4.468 18 H 0.057 0.943 19 C 0.038 3.962 20 N -0.817 5.817 21 Si 0.975 3.025 22 H -0.271 1.271 23 H -0.253 1.253 24 H -0.261 1.261 25 C 0.106 3.894 26 C -0.114 4.114 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.393 0.607 35 H 0.101 0.899 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.064 0.936 39 H 0.122 0.878 40 H 0.131 0.869 41 H 0.120 0.880 42 H 0.101 0.899 43 H 0.291 0.709 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.088 0.912 47 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.934 -4.997 -14.017 19.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.051 4.051 4 C 0.013 3.987 5 O -0.387 6.387 6 C -0.155 4.155 7 C -0.011 4.011 8 N -0.345 5.345 9 C 0.367 3.633 10 O -0.470 6.470 11 C -0.275 4.275 12 C -0.073 4.073 13 C -0.255 4.255 14 C -0.109 4.109 15 C -0.201 4.201 16 C 0.114 3.886 17 C -0.497 4.497 18 H 0.075 0.925 19 C -0.178 4.178 20 N -0.442 5.442 21 Si 0.796 3.204 22 H -0.196 1.196 23 H -0.177 1.177 24 H -0.185 1.185 25 C -0.016 4.016 26 C -0.152 4.152 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.242 0.758 35 H 0.120 0.880 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.082 0.918 39 H 0.140 0.860 40 H 0.149 0.851 41 H 0.138 0.862 42 H 0.119 0.881 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.107 0.893 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.705 -5.056 -12.910 18.145 hybrid contribution -0.066 1.425 0.250 1.448 sum -11.771 -3.631 -12.660 17.664 Atomic orbital electron populations 1.21831 0.94833 1.01961 1.02023 1.21493 0.96719 0.94350 1.01793 1.20520 0.94365 0.96855 0.93323 1.22119 0.98905 0.93333 0.84343 1.86429 1.81630 1.53692 1.16996 1.21893 1.01958 0.98360 0.93250 1.21612 0.79454 1.01152 0.98913 1.48086 1.06345 1.63227 1.16843 1.18577 0.86914 0.76068 0.81732 1.90633 1.78541 1.43877 1.33901 1.19744 0.91504 0.96603 1.19689 1.20949 0.96011 0.94334 0.96026 1.20743 0.92456 0.99848 1.12461 1.21134 0.99211 0.93152 0.97423 1.21217 0.95181 0.97613 1.06097 1.17722 0.91808 0.91883 0.87160 1.19572 1.03713 1.00907 1.25549 0.92526 1.26693 0.93246 1.04803 0.93010 1.69741 1.15742 1.39281 1.19454 0.85326 0.79211 0.76454 0.79447 1.19571 1.17666 1.18483 1.21899 0.99835 0.97547 0.82347 1.21795 0.95447 0.99940 0.98030 0.92318 0.92145 0.92445 0.91499 0.92382 0.91737 0.94442 0.75751 0.88046 0.93344 0.89670 0.91766 0.85967 0.85098 0.86205 0.88144 0.89811 0.90108 0.89844 0.89311 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 9.15 71.98 0.66 -1.60 16 2 C -0.11 -2.01 3.96 30.60 0.12 -1.89 16 3 C -0.05 -1.08 0.38 -52.16 -0.02 -1.10 16 4 C 0.09 1.58 5.31 71.98 0.38 1.96 16 5 O -0.58 -9.55 12.36 -148.98 -1.84 -11.39 16 6 C -0.12 -2.80 4.60 30.67 0.14 -2.66 16 7 C 0.11 3.37 5.98 86.36 0.52 3.89 16 8 N -0.61 -22.64 2.98 -823.60 -2.45 -25.09 16 9 C 0.57 28.11 6.61 86.66 0.57 28.68 16 10 O -0.59 -33.61 15.04 -4.06 -0.06 -33.68 16 11 C -0.27 -13.66 4.96 -19.70 -0.10 -13.76 16 12 C -0.05 -2.31 7.47 22.50 0.17 -2.14 16 13 C -0.24 -9.50 10.03 22.41 0.22 -9.28 16 14 C -0.09 -4.01 10.01 22.26 0.22 -3.78 16 15 C -0.18 -9.51 8.65 22.72 0.20 -9.31 16 16 C 0.12 6.60 5.53 -21.11 -0.12 6.48 16 17 C -0.47 -27.36 7.80 23.41 0.18 -27.18 16 18 H 0.06 3.45 7.01 -2.91 -0.02 3.43 16 19 C 0.04 2.07 5.16 85.37 0.44 2.51 16 20 N -0.82 -44.48 11.18 21.88 0.24 -44.23 16 21 Si 0.97 41.54 29.59 68.60 2.03 43.57 16 22 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 23 H -0.25 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 25 C 0.11 3.22 4.64 86.22 0.40 3.62 16 26 C -0.11 -3.01 4.80 30.53 0.15 -2.87 16 27 H 0.06 0.85 6.32 -2.38 -0.02 0.83 16 28 H 0.06 0.84 6.77 -2.39 -0.02 0.83 16 29 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.07 1.33 7.68 -2.39 -0.02 1.31 16 31 H 0.06 1.19 5.00 -2.39 -0.01 1.18 16 32 H 0.06 0.89 6.78 -2.39 -0.02 0.88 16 33 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.39 3.05 9.12 -74.06 -0.68 2.38 16 35 H 0.10 1.86 6.48 -2.38 -0.02 1.84 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.09 2.18 6.61 -2.39 -0.02 2.16 16 38 H 0.06 2.30 6.99 -2.39 -0.02 2.29 16 39 H 0.12 4.36 7.15 -2.91 -0.02 4.34 16 40 H 0.13 4.26 8.06 -2.92 -0.02 4.23 16 41 H 0.12 4.51 8.06 -2.91 -0.02 4.48 16 42 H 0.10 5.46 6.49 -2.91 -0.02 5.45 16 43 H 0.29 14.23 8.29 -92.71 -0.77 13.46 16 44 H 0.08 2.81 5.05 -2.39 -0.01 2.80 16 45 H 0.08 2.14 6.78 -2.39 -0.02 2.12 16 46 H 0.09 2.17 7.79 -2.39 -0.02 2.15 16 47 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -71.53 356.50 2.38 -69.15 By element: Atomic # 1 Polarization: 29.78 SS G_CDS: 0.32 Total: 30.10 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 4.14 Total: -28.43 kcal Atomic # 7 Polarization: -67.12 SS G_CDS: -2.21 Total: -69.33 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.90 Total: -45.06 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -71.53 2.38 -69.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601392493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.843 kcal (2) G-P(sol) polarization free energy of solvation -71.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds