Wall clock time and date at job start Tue Mar 31 2020 12:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.46934 * 2 1 4 4 C 1.52996 * 109.50034 * 64.55348 * 3 2 1 5 5 O 1.42903 * 109.47158 * 60.37782 * 4 3 2 6 6 C 1.53037 * 109.50088 * 304.48510 * 3 2 1 7 7 C 1.53040 * 109.53819 * 301.41391 * 6 3 2 8 8 C 1.53188 * 109.31564 * 298.63341 * 7 6 3 9 9 N 1.46932 * 108.77445 * 54.63452 * 8 7 6 10 10 C 1.34773 * 120.63104 * 126.37463 * 9 8 7 11 11 O 1.21606 * 119.99674 * 184.73550 * 10 9 8 12 12 C 1.47434 * 119.99875 * 4.72504 * 10 9 8 13 13 C 1.39219 * 120.28070 * 51.97080 * 12 10 9 14 14 C 1.38225 * 120.09036 * 179.97438 * 13 12 10 15 15 C 1.38828 * 120.67450 * 0.02562 * 14 13 12 16 16 C 1.37590 * 120.57288 * 359.74226 * 15 14 13 17 17 C 1.40710 * 119.87975 * 0.49178 * 16 15 14 18 18 C 1.40897 * 120.32566 * 179.78685 * 17 16 15 19 19 H 1.08001 * 119.99491 * 214.65128 * 18 17 16 20 20 C 1.40268 * 119.99856 * 34.65862 * 18 17 16 21 21 N 1.30625 * 120.00249 * 23.51961 * 20 18 17 22 22 Si 1.86800 * 119.99708 * 203.51631 * 20 18 17 23 23 H 1.48500 * 109.47416 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.47227 * 300.00346 * 22 20 18 25 25 H 1.48504 * 109.46959 * 60.00129 * 22 20 18 26 26 C 1.46925 * 118.73683 * 306.64291 * 9 8 7 27 27 H 1.08991 * 109.47284 * 305.18867 * 1 2 3 28 28 H 1.09006 * 109.47182 * 65.19544 * 1 2 3 29 29 H 1.09006 * 109.46909 * 185.19026 * 1 2 3 30 30 H 1.09009 * 109.46736 * 240.00097 * 2 1 3 31 31 H 1.08996 * 109.46977 * 120.00604 * 2 1 3 32 32 H 1.08999 * 109.47658 * 180.38372 * 4 3 2 33 33 H 1.09005 * 109.47070 * 300.38347 * 4 3 2 34 34 H 0.96700 * 113.99872 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.46526 * 181.39453 * 6 3 2 36 36 H 1.08997 * 109.44938 * 61.42587 * 6 3 2 37 37 H 1.09000 * 109.49795 * 178.67882 * 7 6 3 38 38 H 1.08996 * 109.52501 * 58.60415 * 7 6 3 39 39 H 1.09004 * 109.58588 * 294.84812 * 8 7 6 40 40 H 1.08999 * 109.59389 * 174.42288 * 8 7 6 41 41 H 1.07993 * 119.95821 * 359.96846 * 13 12 10 42 42 H 1.07996 * 119.66495 * 179.97438 * 14 13 12 43 43 H 1.08004 * 119.71383 * 180.02562 * 15 14 13 44 44 H 1.08003 * 120.06427 * 180.25720 * 16 15 14 45 45 H 0.96994 * 120.00072 * 3.19390 * 21 20 18 46 46 H 1.09003 * 109.58782 * 173.14461 * 26 9 8 47 47 H 1.08996 * 109.58777 * 293.57246 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6259 2.1305 1.3023 5 8 2.1948 1.4322 2.4117 6 6 1.4401 2.1963 -1.1891 7 6 1.8259 1.4896 -2.4905 8 6 3.3509 1.4924 -2.6358 9 7 3.9421 0.8989 -1.4287 10 6 4.8111 -0.1269 -1.5228 11 8 5.2271 -0.6657 -0.5151 12 6 5.2572 -0.5959 -2.8474 13 6 5.7710 0.3061 -3.7751 14 6 6.1886 -0.1380 -5.0156 15 6 6.1018 -1.4819 -5.3529 16 6 5.6029 -2.3979 -4.4555 17 6 5.1663 -1.9710 -3.1878 18 6 4.6496 -2.9002 -2.2632 19 1 3.8514 -2.6109 -1.5957 20 6 5.1721 -4.2009 -2.2097 21 7 6.3817 -4.4372 -2.6425 22 14 4.1381 -5.5950 -1.5193 23 1 4.9138 -6.8602 -1.5727 24 1 3.7791 -5.2942 -0.1100 25 1 2.8994 -5.7388 -2.3257 26 6 3.5631 1.4411 -0.1167 27 1 -0.3633 0.5922 0.8398 28 1 -0.3634 0.4312 -0.9329 29 1 -0.3633 -1.0235 0.0930 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.9835 3.1602 1.2989 33 1 0.5392 2.1236 1.3873 34 1 1.9732 1.8138 3.2722 35 1 1.8231 3.2167 -1.2028 36 1 0.3544 2.2172 -1.0953 37 1 1.3790 2.0136 -3.3354 38 1 1.4646 0.4615 -2.4677 39 1 3.7052 2.5169 -2.7504 40 1 3.6360 0.9053 -3.5088 41 1 5.8434 1.3542 -3.5252 42 1 6.5857 0.5677 -5.7302 43 1 6.4330 -1.8120 -6.3265 44 1 5.5429 -3.4420 -4.7250 45 1 6.9354 -3.7060 -2.9578 46 1 3.9881 0.8201 0.6719 47 1 3.9350 2.4612 -0.0217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601471697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:35 Heat of formation + Delta-G solvation = -82.941640 kcal Electronic energy + Delta-G solvation = -28371.327594 eV Core-core repulsion = 24710.811254 eV Total energy + Delta-G solvation = -3660.516340 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.25341 -38.40618 -36.90563 -36.10139 -34.11181 -33.63748 -31.45537 -30.56435 -29.65522 -29.32244 -26.04878 -25.47899 -24.87452 -23.46852 -22.11877 -21.55708 -21.00266 -18.97981 -18.07497 -17.63248 -17.34039 -16.44466 -15.78511 -15.33822 -14.99030 -14.75056 -14.58630 -14.23238 -13.98828 -13.63818 -13.56543 -13.32403 -12.92111 -12.65335 -12.53654 -12.44937 -12.28880 -12.21829 -11.98025 -11.81296 -11.29690 -11.16942 -11.02144 -10.87608 -10.82056 -10.69479 -10.56054 -10.37018 -10.20314 -10.07095 -10.01268 -9.93412 -9.54765 -8.98377 -8.69606 -7.99635 -7.71481 -7.60220 -7.19837 -4.46454 2.40418 2.74145 3.19658 3.28711 3.39159 3.63676 3.90139 4.05155 4.14135 4.57851 4.77908 4.84162 4.91692 5.11580 5.22225 5.35480 5.37979 5.42272 5.47416 5.53888 5.66679 5.67415 5.73201 5.74447 5.87236 5.95338 5.96656 6.05119 6.13157 6.18484 6.21508 6.26766 6.36464 6.40653 6.45757 6.56312 6.74227 6.77304 6.99579 7.15352 7.29612 7.52477 7.60168 7.64226 7.73117 7.83766 8.05409 8.19009 8.26862 8.67905 8.82261 9.24518 10.06825 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012336 B = 0.005472 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.232793 B = 5116.148369 C = 6392.363741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.109 4.109 3 C -0.068 4.068 4 C 0.088 3.912 5 O -0.563 6.563 6 C -0.107 4.107 7 C -0.136 4.136 8 C 0.108 3.892 9 N -0.619 5.619 10 C 0.584 3.416 11 O -0.535 6.535 12 C -0.250 4.250 13 C -0.049 4.049 14 C -0.257 4.257 15 C -0.075 4.075 16 C -0.205 4.205 17 C 0.128 3.872 18 C -0.491 4.491 19 H 0.077 0.923 20 C 0.041 3.959 21 N -0.788 5.788 22 Si 1.064 2.936 23 H -0.273 1.273 24 H -0.274 1.274 25 H -0.274 1.274 26 C 0.129 3.871 27 H 0.049 0.951 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.374 0.626 35 H 0.060 0.940 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.055 0.945 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.104 0.896 45 H 0.298 0.702 46 H 0.097 0.903 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.168 12.010 2.846 16.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.069 4.069 4 C 0.009 3.991 5 O -0.368 6.368 6 C -0.145 4.145 7 C -0.174 4.174 8 C -0.015 4.015 9 N -0.354 5.354 10 C 0.376 3.624 11 O -0.411 6.411 12 C -0.255 4.255 13 C -0.068 4.068 14 C -0.276 4.276 15 C -0.094 4.094 16 C -0.224 4.224 17 C 0.124 3.876 18 C -0.519 4.519 19 H 0.095 0.905 20 C -0.182 4.182 21 N -0.411 5.411 22 Si 0.887 3.113 23 H -0.197 1.197 24 H -0.199 1.199 25 H -0.199 1.199 26 C 0.006 3.994 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.220 0.780 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.123 0.877 45 H 0.112 0.888 46 H 0.115 0.885 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.608 9.670 3.199 14.706 hybrid contribution -0.220 2.306 0.012 2.317 sum -10.828 11.976 3.210 16.461 Atomic orbital electron populations 1.21865 0.96530 1.01344 1.01023 1.21474 0.94859 0.94971 1.03382 1.20859 0.96502 0.96690 0.92898 1.22197 0.96416 0.94036 0.86401 1.86588 1.76410 1.57317 1.16467 1.21543 1.00316 0.98513 0.94091 1.21947 0.96602 1.01880 0.96947 1.21733 0.92208 0.98202 0.89370 1.48103 1.45698 1.35713 1.05919 1.18471 0.77072 0.77007 0.89808 1.90692 1.56694 1.55365 1.38303 1.19444 1.16588 0.95421 0.94009 1.20660 0.96658 0.96515 0.92984 1.20225 1.14276 0.95361 0.97768 1.20721 0.97592 0.93514 0.97589 1.21146 1.08622 0.98507 0.94098 1.17401 0.88207 0.90293 0.91667 1.20497 1.18120 0.96709 1.16547 0.90524 1.27030 0.96419 1.00593 0.94174 1.70381 1.06305 1.39178 1.25209 0.83652 0.75533 0.74762 0.77312 1.19749 1.19914 1.19946 1.21283 0.92763 0.98423 0.86932 0.93179 0.92838 0.92997 0.91107 0.91194 0.94014 0.93397 0.78007 0.92112 0.91604 0.91140 0.90821 0.92694 0.88372 0.88924 0.88909 0.88943 0.87748 0.88816 0.88470 0.93065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.12 37.16 0.34 -1.49 16 2 C -0.11 -1.68 4.32 -26.73 -0.12 -1.80 16 3 C -0.07 -0.92 0.38 -154.61 -0.06 -0.97 16 4 C 0.09 0.95 5.68 37.16 0.21 1.16 16 5 O -0.56 -6.79 12.35 -35.23 -0.44 -7.23 16 6 C -0.11 -1.20 4.20 -26.69 -0.11 -1.32 16 7 C -0.14 -1.73 5.73 -26.61 -0.15 -1.89 16 8 C 0.11 1.67 5.45 -3.71 -0.02 1.65 16 9 N -0.62 -11.58 2.35 -174.29 -0.41 -11.98 16 10 C 0.58 13.90 6.45 -12.52 -0.08 13.82 16 11 O -0.53 -14.79 15.56 5.27 0.08 -14.71 16 12 C -0.25 -6.09 4.76 -104.37 -0.50 -6.59 16 13 C -0.05 -1.06 7.63 -39.22 -0.30 -1.36 16 14 C -0.26 -5.38 10.03 -39.37 -0.39 -5.77 16 15 C -0.08 -1.66 10.01 -39.60 -0.40 -2.06 16 16 C -0.20 -5.07 8.01 -38.88 -0.31 -5.38 16 17 C 0.13 3.39 5.11 -106.54 -0.54 2.84 16 18 C -0.49 -13.47 7.70 -37.81 -0.29 -13.76 16 19 H 0.08 2.16 7.47 -52.49 -0.39 1.77 16 20 C 0.04 1.07 4.94 -17.30 -0.09 0.98 16 21 N -0.79 -21.57 12.71 55.56 0.71 -20.86 16 22 Si 1.06 22.71 30.00 -169.99 -5.10 17.61 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 26 C 0.13 2.15 4.85 -3.93 -0.02 2.13 16 27 H 0.05 0.54 6.31 -51.93 -0.33 0.21 16 28 H 0.05 0.60 6.64 -51.93 -0.34 0.25 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 1.30 6.11 -51.92 -0.32 0.98 16 31 H 0.07 1.23 7.56 -51.93 -0.39 0.84 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.45 6.43 -51.93 -0.33 0.11 16 34 H 0.37 2.63 9.12 45.56 0.42 3.05 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.65 6.56 -51.93 -0.34 0.30 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.07 1.07 6.39 -51.93 -0.33 0.74 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.10 1.70 5.23 -51.93 -0.27 1.43 16 41 H 0.09 1.76 7.57 -52.49 -0.40 1.37 16 42 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 43 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 44 H 0.10 2.64 7.13 -52.48 -0.37 2.27 16 45 H 0.30 8.42 6.83 -40.82 -0.28 8.15 16 46 H 0.10 1.94 6.70 -51.93 -0.35 1.60 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -31.49 359.67 -8.78 -40.27 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -6.21 Total: 11.29 kcal Atomic # 6 Polarization: -16.97 SS G_CDS: -2.83 Total: -19.80 kcal Atomic # 7 Polarization: -33.14 SS G_CDS: 0.30 Total: -32.84 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.35 Total: -21.94 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.10 Total: 17.61 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.49 -8.78 -40.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601471697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.677 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds