Wall clock time and date at job start Tue Mar 31 2020 12:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.46934 * 2 1 4 4 C 1.52996 * 109.50034 * 64.55348 * 3 2 1 5 5 O 1.42903 * 109.47158 * 60.37782 * 4 3 2 6 6 C 1.53037 * 109.50088 * 304.48510 * 3 2 1 7 7 C 1.53040 * 109.53819 * 301.41391 * 6 3 2 8 8 C 1.53188 * 109.31564 * 298.63341 * 7 6 3 9 9 N 1.46932 * 108.77445 * 54.63452 * 8 7 6 10 10 C 1.34773 * 120.63104 * 126.37463 * 9 8 7 11 11 O 1.21606 * 119.99674 * 184.73550 * 10 9 8 12 12 C 1.47434 * 119.99875 * 4.72504 * 10 9 8 13 13 C 1.39219 * 120.28070 * 51.97080 * 12 10 9 14 14 C 1.38225 * 120.09036 * 179.97438 * 13 12 10 15 15 C 1.38828 * 120.67450 * 0.02562 * 14 13 12 16 16 C 1.37590 * 120.57288 * 359.74226 * 15 14 13 17 17 C 1.40710 * 119.87975 * 0.49178 * 16 15 14 18 18 C 1.40897 * 120.32566 * 179.78685 * 17 16 15 19 19 H 1.08001 * 119.99491 * 214.65128 * 18 17 16 20 20 C 1.40268 * 119.99856 * 34.65862 * 18 17 16 21 21 N 1.30625 * 120.00249 * 23.51961 * 20 18 17 22 22 Si 1.86800 * 119.99708 * 203.51631 * 20 18 17 23 23 H 1.48500 * 109.47416 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.47227 * 300.00346 * 22 20 18 25 25 H 1.48504 * 109.46959 * 60.00129 * 22 20 18 26 26 C 1.46925 * 118.73683 * 306.64291 * 9 8 7 27 27 H 1.08991 * 109.47284 * 305.18867 * 1 2 3 28 28 H 1.09006 * 109.47182 * 65.19544 * 1 2 3 29 29 H 1.09006 * 109.46909 * 185.19026 * 1 2 3 30 30 H 1.09009 * 109.46736 * 240.00097 * 2 1 3 31 31 H 1.08996 * 109.46977 * 120.00604 * 2 1 3 32 32 H 1.08999 * 109.47658 * 180.38372 * 4 3 2 33 33 H 1.09005 * 109.47070 * 300.38347 * 4 3 2 34 34 H 0.96700 * 113.99872 * 180.02562 * 5 4 3 35 35 H 1.08998 * 109.46526 * 181.39453 * 6 3 2 36 36 H 1.08997 * 109.44938 * 61.42587 * 6 3 2 37 37 H 1.09000 * 109.49795 * 178.67882 * 7 6 3 38 38 H 1.08996 * 109.52501 * 58.60415 * 7 6 3 39 39 H 1.09004 * 109.58588 * 294.84812 * 8 7 6 40 40 H 1.08999 * 109.59389 * 174.42288 * 8 7 6 41 41 H 1.07993 * 119.95821 * 359.96846 * 13 12 10 42 42 H 1.07996 * 119.66495 * 179.97438 * 14 13 12 43 43 H 1.08004 * 119.71383 * 180.02562 * 15 14 13 44 44 H 1.08003 * 120.06427 * 180.25720 * 16 15 14 45 45 H 0.96994 * 120.00072 * 3.19390 * 21 20 18 46 46 H 1.09003 * 109.58782 * 173.14461 * 26 9 8 47 47 H 1.08996 * 109.58777 * 293.57246 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6259 2.1305 1.3023 5 8 2.1948 1.4322 2.4117 6 6 1.4401 2.1963 -1.1891 7 6 1.8259 1.4896 -2.4905 8 6 3.3509 1.4924 -2.6358 9 7 3.9421 0.8989 -1.4287 10 6 4.8111 -0.1269 -1.5228 11 8 5.2271 -0.6657 -0.5151 12 6 5.2572 -0.5959 -2.8474 13 6 5.7710 0.3061 -3.7751 14 6 6.1886 -0.1380 -5.0156 15 6 6.1018 -1.4819 -5.3529 16 6 5.6029 -2.3979 -4.4555 17 6 5.1663 -1.9710 -3.1878 18 6 4.6496 -2.9002 -2.2632 19 1 3.8514 -2.6109 -1.5957 20 6 5.1721 -4.2009 -2.2097 21 7 6.3817 -4.4372 -2.6425 22 14 4.1381 -5.5950 -1.5193 23 1 4.9138 -6.8602 -1.5727 24 1 3.7791 -5.2942 -0.1100 25 1 2.8994 -5.7388 -2.3257 26 6 3.5631 1.4411 -0.1167 27 1 -0.3633 0.5922 0.8398 28 1 -0.3634 0.4312 -0.9329 29 1 -0.3633 -1.0235 0.0930 30 1 1.8933 -0.5139 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 1.9835 3.1602 1.2989 33 1 0.5392 2.1236 1.3873 34 1 1.9732 1.8138 3.2722 35 1 1.8231 3.2167 -1.2028 36 1 0.3544 2.2172 -1.0953 37 1 1.3790 2.0136 -3.3354 38 1 1.4646 0.4615 -2.4677 39 1 3.7052 2.5169 -2.7504 40 1 3.6360 0.9053 -3.5088 41 1 5.8434 1.3542 -3.5252 42 1 6.5857 0.5677 -5.7302 43 1 6.4330 -1.8120 -6.3265 44 1 5.5429 -3.4420 -4.7250 45 1 6.9354 -3.7060 -2.9578 46 1 3.9881 0.8201 0.6719 47 1 3.9350 2.4612 -0.0217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601471697.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:14:34 Heat of formation + Delta-G solvation = -103.607607 kcal Electronic energy + Delta-G solvation = -28372.223737 eV Core-core repulsion = 24710.811254 eV Total energy + Delta-G solvation = -3661.412483 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.65494 -39.97033 -38.62843 -37.27794 -35.88289 -35.13346 -32.66837 -32.16233 -31.40398 -30.82336 -27.51264 -26.77568 -26.45950 -24.71312 -23.59394 -22.95309 -22.82085 -20.65087 -19.63951 -19.07910 -18.27627 -18.04024 -17.18924 -16.83396 -16.59206 -16.20302 -16.03247 -15.69968 -15.61133 -15.03593 -14.89421 -14.60286 -14.35153 -14.17774 -14.01407 -14.00181 -13.84446 -13.69221 -13.29253 -13.09124 -12.89945 -12.75549 -12.52921 -12.32677 -12.06712 -12.02258 -11.98024 -11.84692 -11.72663 -11.44416 -11.32641 -11.11970 -10.93633 -10.79824 -10.53974 -9.63208 -9.52917 -9.46307 -9.19449 -6.51252 0.53591 0.87440 1.39908 1.54521 1.69614 1.94820 2.25098 2.26737 2.65032 3.29443 3.43908 3.70510 3.76793 3.88050 4.06144 4.09423 4.16874 4.25692 4.33026 4.40947 4.45699 4.49114 4.57080 4.60221 4.64246 4.71600 4.72482 4.78497 4.86946 4.89882 4.94875 5.01782 5.08707 5.10296 5.15693 5.27900 5.29155 5.35265 5.36669 5.57816 5.59596 5.70983 5.73217 5.82211 5.90186 6.14339 6.30417 6.54544 6.74410 6.83389 6.99755 7.45435 8.00199 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012336 B = 0.005472 C = 0.004379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2269.232793 B = 5116.148369 C = 6392.363741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.105 4.105 3 C -0.066 4.066 4 C 0.089 3.911 5 O -0.595 6.595 6 C -0.100 4.100 7 C -0.132 4.132 8 C 0.101 3.899 9 N -0.608 5.608 10 C 0.575 3.425 11 O -0.593 6.593 12 C -0.262 4.262 13 C -0.048 4.048 14 C -0.234 4.234 15 C -0.073 4.073 16 C -0.223 4.223 17 C 0.103 3.897 18 C -0.531 4.531 19 H 0.047 0.953 20 C 0.005 3.995 21 N -0.813 5.813 22 Si 1.108 2.892 23 H -0.261 1.261 24 H -0.276 1.276 25 H -0.253 1.253 26 C 0.126 3.874 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.028 0.972 31 H 0.031 0.969 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.394 0.606 35 H 0.088 0.912 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.125 0.875 42 H 0.138 0.862 43 H 0.126 0.874 44 H 0.088 0.912 45 H 0.280 0.720 46 H 0.051 0.949 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.075 15.871 1.371 20.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.143 4.143 3 C -0.067 4.067 4 C 0.012 3.988 5 O -0.403 6.403 6 C -0.137 4.137 7 C -0.170 4.170 8 C -0.021 4.021 9 N -0.341 5.341 10 C 0.367 3.633 11 O -0.474 6.474 12 C -0.266 4.266 13 C -0.066 4.066 14 C -0.253 4.253 15 C -0.092 4.092 16 C -0.242 4.242 17 C 0.099 3.901 18 C -0.560 4.560 19 H 0.065 0.935 20 C -0.211 4.211 21 N -0.436 5.436 22 Si 0.925 3.075 23 H -0.185 1.185 24 H -0.201 1.201 25 H -0.178 1.178 26 C 0.004 3.996 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.061 0.939 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.244 0.756 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.143 0.857 42 H 0.155 0.845 43 H 0.144 0.856 44 H 0.106 0.894 45 H 0.092 0.908 46 H 0.070 0.930 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.559 13.599 1.697 18.588 hybrid contribution 0.428 1.378 0.375 1.491 sum -12.130 14.977 2.072 19.384 Atomic orbital electron populations 1.21803 0.93543 1.01603 1.02869 1.21359 0.97392 0.96118 0.99442 1.20903 0.93738 0.95835 0.96222 1.22255 0.97762 0.94393 0.84421 1.86565 1.77071 1.58535 1.18128 1.21554 1.01869 0.98909 0.91345 1.21940 0.94353 1.01214 0.99529 1.22027 0.94240 0.99010 0.86853 1.48083 1.43827 1.33982 1.08206 1.18584 0.77803 0.77926 0.88966 1.90649 1.59294 1.57650 1.39794 1.19764 1.16447 0.95417 0.94992 1.20996 0.95388 0.97601 0.92657 1.20778 1.11144 0.95508 0.97870 1.21123 0.96074 0.93665 0.98311 1.21124 1.10165 0.98559 0.94345 1.17735 0.88692 0.91385 0.92245 1.20400 1.19269 0.98357 1.17960 0.93467 1.28284 0.96589 1.02621 0.93605 1.70507 1.06742 1.38044 1.28346 0.83147 0.75052 0.72516 0.76769 1.18468 1.20146 1.17752 1.21434 0.95488 0.98266 0.84436 0.90857 0.91061 0.93852 0.95312 0.95036 0.91484 0.90925 0.75625 0.89366 0.88919 0.87705 0.93538 0.89232 0.90511 0.85739 0.84459 0.85562 0.89358 0.90804 0.93010 0.90432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 9.12 71.98 0.66 -2.61 16 2 C -0.11 -3.37 4.32 30.59 0.13 -3.24 16 3 C -0.07 -1.67 0.38 -52.25 -0.02 -1.69 16 4 C 0.09 1.67 5.68 71.98 0.41 2.08 16 5 O -0.59 -13.94 12.35 -148.98 -1.84 -15.78 16 6 C -0.10 -1.81 4.20 30.62 0.13 -1.68 16 7 C -0.13 -3.01 5.73 30.67 0.18 -2.84 16 8 C 0.10 2.89 5.45 86.36 0.47 3.36 16 9 N -0.61 -23.06 2.35 -823.59 -1.93 -24.99 16 10 C 0.58 28.94 6.45 86.67 0.56 29.50 16 11 O -0.59 -35.74 15.56 -4.05 -0.06 -35.80 16 12 C -0.26 -13.18 4.76 -19.70 -0.09 -13.27 16 13 C -0.05 -1.97 7.63 22.50 0.17 -1.80 16 14 C -0.23 -9.01 10.03 22.41 0.22 -8.78 16 15 C -0.07 -3.11 10.01 22.26 0.22 -2.88 16 16 C -0.22 -11.40 8.01 22.72 0.18 -11.22 16 17 C 0.10 5.75 5.11 -21.11 -0.11 5.64 16 18 C -0.53 -31.70 7.70 23.41 0.18 -31.52 16 19 H 0.05 2.98 7.47 -2.91 -0.02 2.96 16 20 C 0.00 0.28 4.94 85.37 0.42 0.70 16 21 N -0.81 -47.47 12.71 21.88 0.28 -47.19 16 22 Si 1.11 48.76 30.00 68.60 2.06 50.82 16 23 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 25 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16 26 C 0.13 4.22 4.85 86.22 0.42 4.63 16 27 H 0.07 1.36 6.31 -2.39 -0.02 1.34 16 28 H 0.07 1.40 6.64 -2.38 -0.02 1.38 16 29 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.03 1.13 6.11 -2.38 -0.01 1.12 16 31 H 0.03 1.21 7.56 -2.39 -0.02 1.19 16 32 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 1.03 6.43 -2.38 -0.02 1.01 16 34 H 0.39 5.02 9.12 -74.06 -0.68 4.35 16 35 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.29 6.56 -2.39 -0.02 1.27 16 37 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.05 1.33 6.39 -2.39 -0.02 1.31 16 39 H 0.09 2.00 8.14 -2.39 -0.02 1.99 16 40 H 0.08 2.55 5.23 -2.39 -0.01 2.54 16 41 H 0.12 4.31 7.57 -2.91 -0.02 4.29 16 42 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 43 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 44 H 0.09 4.73 7.13 -2.91 -0.02 4.70 16 45 H 0.28 16.99 6.83 -92.71 -0.63 16.36 16 46 H 0.05 2.22 6.70 -2.39 -0.02 2.20 16 47 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -78.95 359.67 3.08 -75.87 By element: Atomic # 1 Polarization: 32.25 SS G_CDS: 0.45 Total: 32.70 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 4.13 Total: -35.62 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -1.65 Total: -72.19 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -1.90 Total: -51.58 kcal Atomic # 14 Polarization: 48.76 SS G_CDS: 2.06 Total: 50.82 kcal Total: -78.95 3.08 -75.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601471697.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.736 kcal (2) G-P(sol) polarization free energy of solvation -78.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds