Wall clock time and date at job start Tue Mar 31 2020 12:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53002 * 109.47099 * 2 1 4 4 N 1.46896 * 109.47468 * 59.99683 * 3 2 1 5 5 C 1.46903 * 110.99697 * 56.94041 * 4 3 2 6 6 C 1.53002 * 109.47055 * 183.96671 * 5 4 3 7 7 C 1.50700 * 115.54882 * 185.66396 * 6 5 4 8 8 H 1.08000 * 120.00082 * 144.60835 * 7 6 5 9 9 C 1.37874 * 120.00357 * 324.60350 * 7 6 5 10 10 N 1.31516 * 119.99845 * 3.61846 * 9 7 6 11 11 Si 1.86792 * 120.00327 * 183.62036 * 9 7 6 12 12 H 1.48504 * 109.47393 * 89.99744 * 11 9 7 13 13 H 1.48498 * 109.47556 * 210.00000 * 11 9 7 14 14 H 1.48498 * 109.47435 * 330.00049 * 11 9 7 15 15 C 1.52995 * 117.49745 * 39.99747 * 6 5 4 16 16 C 1.52995 * 117.49996 * 331.33544 * 6 5 4 17 17 C 1.50704 * 109.47275 * 180.02562 * 3 2 1 18 18 O 1.20822 * 119.99727 * 24.99620 * 17 3 2 19 19 O 1.34221 * 119.99976 * 204.99723 * 17 3 2 20 20 C 1.45205 * 116.99941 * 179.97438 * 19 17 3 21 21 C 1.50701 * 109.46820 * 299.99540 * 3 2 1 22 22 C 1.38238 * 119.99471 * 123.79832 * 21 3 2 23 23 C 1.38239 * 119.99727 * 179.76839 * 22 21 3 24 24 C 1.38234 * 119.99812 * 0.50341 * 23 22 21 25 25 C 1.38233 * 120.00030 * 359.75038 * 24 23 22 26 26 C 1.38228 * 120.00281 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47538 * 300.00105 * 1 2 3 28 28 H 1.09001 * 109.47430 * 60.00011 * 1 2 3 29 29 H 1.09004 * 109.47526 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47538 * 239.99895 * 2 1 3 31 31 H 1.09006 * 109.47145 * 119.99636 * 2 1 3 32 32 H 1.00896 * 111.00072 * 180.88948 * 4 3 2 33 33 H 1.09000 * 109.47116 * 303.96245 * 5 4 3 34 34 H 1.09000 * 109.47503 * 63.96423 * 5 4 3 35 35 H 0.97001 * 120.00207 * 185.00100 * 10 9 7 36 36 H 1.08999 * 117.50276 * 359.97438 * 15 6 5 37 37 H 1.09005 * 117.49948 * 145.02166 * 15 6 5 38 38 H 1.08998 * 117.49780 * 214.98247 * 16 6 5 39 39 H 1.09001 * 117.49882 * 359.97438 * 16 6 5 40 40 H 1.09005 * 109.47166 * 179.97438 * 20 19 17 41 41 H 1.08992 * 109.47536 * 300.00228 * 20 19 17 42 42 H 1.09001 * 109.46699 * 60.00324 * 20 19 17 43 43 H 1.08000 * 120.00631 * 359.97438 * 22 21 3 44 44 H 1.08003 * 119.99917 * 180.22812 * 23 22 21 45 45 H 1.08007 * 119.99821 * 179.72246 * 24 23 22 46 46 H 1.08001 * 119.99612 * 179.97438 * 25 24 23 47 47 H 1.07998 * 120.00245 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5502 2.1351 1.1993 5 6 1.9606 1.4280 2.4199 6 6 1.3510 2.1211 3.6401 7 6 1.7917 1.5870 4.9786 8 1 1.9177 2.2600 5.8138 9 6 2.0340 0.2390 5.1371 10 7 1.9497 -0.5702 4.1038 11 14 2.4818 -0.4381 6.8194 12 1 1.2443 -0.8288 7.5413 13 1 3.3568 -1.6270 6.6577 14 1 3.2004 0.6032 7.5969 15 6 -0.0882 2.6261 3.5201 16 6 1.0740 3.6221 3.5350 17 6 3.5470 1.4426 -0.0006 18 8 4.1509 0.4943 -0.4432 19 8 4.2182 2.4960 0.4904 20 6 5.6683 2.4269 0.4582 21 6 1.5376 2.1528 -1.2306 22 6 0.8088 3.3208 -1.1052 23 6 0.3522 3.9750 -2.2342 24 6 0.6154 3.4556 -3.4879 25 6 1.3397 2.2849 -3.6129 26 6 1.8012 1.6338 -2.4843 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.8618 3.0946 1.2153 33 1 1.6122 0.3961 2.3765 34 1 3.0475 1.4415 2.4996 35 1 2.0485 -1.5272 4.2278 36 1 -0.6007 2.4649 2.5718 37 1 -0.7163 2.5724 4.4094 38 1 1.2102 4.2232 4.4340 39 1 1.3264 4.1160 2.5966 40 1 6.0851 3.3400 0.8834 41 1 6.0042 1.5686 1.0399 42 1 6.0041 2.3207 -0.5733 43 1 0.5991 3.7240 -0.1255 44 1 -0.2141 4.8895 -2.1364 45 1 0.2547 3.9644 -4.3698 46 1 1.5449 1.8789 -4.5925 47 1 2.3667 0.7189 -2.5820 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602793003.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:34:45 Heat of formation + Delta-G solvation = -22.185069 kcal Electronic energy + Delta-G solvation = -28515.497912 eV Core-core repulsion = 24857.616175 eV Total energy + Delta-G solvation = -3657.881737 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.82833 -39.04002 -37.38504 -36.32760 -35.31915 -32.23444 -31.45373 -30.64788 -30.49519 -27.94030 -26.34683 -25.76104 -24.20100 -22.29058 -22.04743 -21.89666 -21.07425 -19.33642 -18.50434 -17.45443 -17.23278 -16.67702 -16.14949 -15.90403 -15.13537 -14.93954 -14.62968 -14.29211 -14.01813 -13.76535 -13.56968 -13.28404 -13.00258 -12.72300 -12.48401 -12.40334 -12.34286 -11.87872 -11.60769 -11.44748 -11.35958 -11.32459 -11.01903 -10.93853 -10.69044 -10.57021 -10.53183 -10.44235 -10.32666 -10.13212 -9.96146 -9.39169 -8.87916 -8.80707 -8.66242 -8.62893 -8.16038 -7.69893 -6.03586 -4.12276 1.38248 1.51927 2.51946 2.97983 3.25881 3.33422 3.35938 3.89877 4.33764 4.55854 4.88126 5.01391 5.05041 5.06560 5.10828 5.25048 5.26864 5.28096 5.36680 5.58929 5.61894 5.66823 5.71376 5.86433 5.96068 6.04279 6.14545 6.21628 6.27772 6.42291 6.49082 6.54397 6.59083 6.60853 6.64832 6.71934 6.73879 6.75923 6.92250 6.95044 7.08667 7.16372 7.24736 7.49308 7.49754 7.80973 7.99042 8.04897 8.18411 8.45253 8.87918 9.49663 10.94286 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015556 B = 0.004747 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.539780 B = 5897.191648 C = 6340.939147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.100 4.100 3 C 0.178 3.822 4 N -0.667 5.667 5 C 0.092 3.908 6 C 0.055 3.945 7 C -0.484 4.484 8 H 0.060 0.940 9 C 0.069 3.931 10 N -0.885 5.885 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.192 4.192 16 C -0.215 4.215 17 C 0.445 3.555 18 O -0.512 6.512 19 O -0.354 6.354 20 C 0.037 3.963 21 C -0.066 4.066 22 C -0.088 4.088 23 C -0.124 4.124 24 C -0.123 4.123 25 C -0.124 4.124 26 C -0.112 4.112 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.337 0.663 33 H 0.134 0.866 34 H 0.016 0.984 35 H 0.262 0.738 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.138 0.862 44 H 0.121 0.879 45 H 0.118 0.882 46 H 0.119 0.881 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.026 5.810 -13.308 14.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 C 0.084 3.916 4 N -0.300 5.300 5 C -0.034 4.034 6 C 0.054 3.946 7 C -0.522 4.522 8 H 0.078 0.922 9 C -0.133 4.133 10 N -0.524 5.524 11 Si 0.724 3.276 12 H -0.205 1.205 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.230 4.230 16 C -0.252 4.252 17 C 0.286 3.714 18 O -0.398 6.398 19 O -0.270 6.270 20 C -0.057 4.057 21 C -0.067 4.067 22 C -0.106 4.106 23 C -0.142 4.142 24 C -0.141 4.141 25 C -0.143 4.143 26 C -0.130 4.130 27 H 0.096 0.904 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.156 0.844 44 H 0.139 0.861 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.264 5.034 -13.483 14.395 hybrid contribution 1.462 -0.157 0.924 1.736 sum 1.198 4.877 -12.560 13.526 Atomic orbital electron populations 1.21599 0.93946 1.00931 1.02824 1.21546 0.97506 0.91134 1.03526 1.19830 0.82640 0.97488 0.91629 1.61056 1.61626 1.05903 1.01430 1.22140 0.96181 1.00913 0.84185 1.18976 0.92944 0.88656 0.93987 1.20636 1.44668 0.92716 0.94171 0.92169 1.24967 0.94440 0.97058 0.96841 1.69747 1.50345 1.03601 1.28660 0.86516 0.78450 0.78557 0.84099 1.20523 1.21193 1.19907 1.22902 0.93442 1.06578 1.00104 1.22850 1.07592 0.95273 0.99510 1.25334 0.93076 0.79884 0.73143 1.90587 1.70668 1.35121 1.43418 1.86529 1.21741 1.43606 1.75158 1.23194 0.77030 1.03511 1.01998 1.19448 0.99072 0.95569 0.92610 1.21158 0.95967 0.93945 0.99492 1.21160 1.00517 1.00079 0.92462 1.21131 0.99115 0.96391 0.97431 1.21023 0.99094 0.96022 0.98117 1.21071 0.99928 1.00009 0.91995 0.90432 0.93469 0.93310 0.91575 0.89371 0.84217 0.84848 0.96538 0.92782 0.90376 0.91469 0.91379 0.91386 0.88347 0.91916 0.92460 0.84414 0.86058 0.86442 0.86303 0.85992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.51 37.15 0.35 -1.86 16 2 C -0.10 -1.76 3.84 -26.73 -0.10 -1.86 16 3 C 0.18 3.08 0.46 -133.90 -0.06 3.02 16 4 N -0.67 -12.22 3.22 -102.32 -0.33 -12.55 16 5 C 0.09 2.08 4.05 -3.82 -0.02 2.06 16 6 C 0.06 1.32 2.45 -155.66 -0.38 0.94 16 7 C -0.48 -12.90 9.06 -34.44 -0.31 -13.21 16 8 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 9 C 0.07 1.82 5.39 -17.82 -0.10 1.72 16 10 N -0.89 -23.71 10.31 55.43 0.57 -23.14 16 11 Si 0.90 20.70 29.54 -169.99 -5.02 15.68 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 14 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 15 C -0.19 -4.21 9.65 -26.70 -0.26 -4.46 16 16 C -0.21 -4.50 9.57 -26.70 -0.26 -4.75 16 17 C 0.45 8.34 5.36 36.01 0.19 8.54 16 18 O -0.51 -10.35 15.84 -18.75 -0.30 -10.65 16 19 O -0.35 -6.27 9.51 -39.23 -0.37 -6.65 16 20 C 0.04 0.52 10.56 101.05 1.07 1.58 16 21 C -0.07 -1.00 3.50 -104.62 -0.37 -1.37 16 22 C -0.09 -1.22 9.18 -39.58 -0.36 -1.58 16 23 C -0.12 -1.47 10.05 -39.58 -0.40 -1.86 16 24 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 25 C -0.12 -1.47 10.05 -39.59 -0.40 -1.87 16 26 C -0.11 -1.56 8.89 -39.59 -0.35 -1.91 16 27 H 0.08 1.41 7.60 -51.93 -0.39 1.02 16 28 H 0.05 0.71 7.22 -51.93 -0.37 0.34 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.10 6.90 -51.93 -0.36 0.74 16 31 H 0.09 1.81 6.27 -51.93 -0.33 1.48 16 32 H 0.34 6.03 5.16 -39.29 -0.20 5.83 16 33 H 0.13 3.29 3.81 -51.93 -0.20 3.09 16 34 H 0.02 0.41 7.00 -51.93 -0.36 0.05 16 35 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 36 H 0.08 1.62 7.78 -51.93 -0.40 1.22 16 37 H 0.07 1.51 8.14 -51.93 -0.42 1.08 16 38 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.07 1.28 6.30 -51.93 -0.33 0.95 16 40 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 42 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 43 H 0.14 1.94 6.38 -52.49 -0.33 1.60 16 44 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 45 H 0.12 1.00 8.06 -52.48 -0.42 0.58 16 46 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 47 H 0.12 1.73 7.34 -52.49 -0.39 1.34 16 LS Contribution 372.25 15.07 5.61 5.61 Total: -1.00 -28.22 372.25 -9.00 -37.23 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: -7.02 Total: 13.10 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -2.14 Total: -18.63 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.24 Total: -35.69 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.67 Total: -17.30 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -28.22 -9.00 -37.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602793003.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.043 kcal (2) G-P(sol) polarization free energy of solvation -28.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds