Wall clock time and date at job start Tue Mar 31 2020 11:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47269 * 2 1 4 4 O 1.42903 * 109.47064 * 64.99891 * 3 2 1 5 5 C 1.53002 * 109.47229 * 305.00210 * 3 2 1 6 6 C 1.52994 * 109.47585 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47251 * 59.99628 * 6 5 3 8 8 N 1.46498 * 109.46983 * 60.00158 * 7 6 5 9 9 C 1.34780 * 119.99895 * 85.00194 * 8 7 6 10 10 O 1.21586 * 119.99823 * 359.97438 * 9 8 7 11 11 C 1.47636 * 120.00233 * 180.02562 * 9 8 7 12 12 C 1.40017 * 119.89069 * 359.72128 * 11 9 8 13 13 C 1.36322 * 120.10223 * 179.76297 * 12 11 9 14 14 C 1.40888 * 119.89223 * 0.51809 * 13 12 11 15 15 C 1.41109 * 120.10565 * 179.72200 * 14 13 12 16 16 H 1.07996 * 119.99955 * 204.65003 * 15 14 13 17 17 C 1.40229 * 119.99889 * 24.63651 * 15 14 13 18 18 N 1.30651 * 119.99768 * 17.88323 * 17 15 14 19 19 Si 1.86792 * 120.00146 * 197.87909 * 17 15 14 20 20 H 1.48499 * 109.47150 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47116 * 120.00254 * 19 17 15 22 22 H 1.48501 * 109.47518 * 240.00644 * 19 17 15 23 23 C 1.40890 * 119.79231 * 359.73525 * 14 13 12 24 24 C 1.36312 * 119.89267 * 359.97438 * 23 14 13 25 25 C 1.53000 * 109.46800 * 300.00499 * 7 6 5 26 26 C 1.52994 * 109.47270 * 59.99853 * 25 7 6 27 27 H 1.09004 * 109.47226 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47194 * 60.00271 * 1 2 3 29 29 H 1.09000 * 109.47036 * 300.00455 * 1 2 3 30 30 H 1.08997 * 109.46976 * 120.00396 * 2 1 3 31 31 H 1.09006 * 109.46772 * 239.99875 * 2 1 3 32 32 H 0.96701 * 114.00278 * 299.99841 * 4 3 2 33 33 H 1.09004 * 109.47107 * 300.00272 * 5 3 2 34 34 H 1.08997 * 109.47183 * 59.99604 * 5 3 2 35 35 H 1.09004 * 109.47020 * 300.00203 * 6 5 3 36 36 H 1.08998 * 109.47845 * 179.97438 * 6 5 3 37 37 H 1.08994 * 109.47285 * 180.02562 * 7 6 5 38 38 H 0.96993 * 120.00043 * 265.00501 * 8 7 6 39 39 H 1.08001 * 119.95172 * 0.02562 * 12 11 9 40 40 H 1.07998 * 120.05547 * 180.22949 * 13 12 11 41 41 H 0.97000 * 119.99571 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.05083 * 179.97438 * 23 14 13 43 43 H 1.07998 * 119.94884 * 179.97438 * 24 23 14 44 44 H 1.09004 * 109.47395 * 299.99379 * 25 7 6 45 45 H 1.09006 * 109.46843 * 179.97438 * 25 7 6 46 46 H 1.09011 * 109.47283 * 179.97438 * 26 25 7 47 47 H 1.09004 * 109.47324 * 60.00254 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.6620 2.0813 1.2211 5 6 1.4299 2.1991 -1.1816 6 6 1.9404 3.6414 -1.1821 7 6 3.4653 3.6427 -1.3081 8 7 3.8523 2.9874 -2.5598 9 6 3.8860 3.6931 -3.7076 10 8 3.5947 4.8736 -3.7042 11 6 4.2755 3.0326 -4.9692 12 6 4.6151 1.6743 -4.9697 13 6 4.9708 1.0589 -6.1330 14 6 5.0068 1.7945 -7.3340 15 6 5.3799 1.1635 -8.5397 16 1 5.7906 1.7473 -9.3502 17 6 5.2178 -0.2218 -8.6854 18 7 4.4216 -0.8744 -7.8810 19 14 6.1400 -1.1339 -10.0295 20 1 6.9709 -0.1734 -10.7991 21 1 7.0156 -2.1651 -9.4169 22 1 5.1672 -1.7883 -10.9409 23 6 4.6693 3.1624 -7.3274 24 6 4.3092 3.7677 -6.1604 25 6 4.0752 2.8861 -0.1265 26 6 3.5648 1.4438 -0.1261 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 0.7067 2.1165 1.3673 33 1 1.7182 1.7118 -2.1130 34 1 0.3437 2.1978 -1.0921 35 1 1.6525 4.1290 -0.2506 36 1 1.5062 4.1804 -2.0241 37 1 3.8290 4.6702 -1.3080 38 1 4.0843 2.0456 -2.5626 39 1 4.5912 1.1121 -4.0479 40 1 5.2290 0.0102 -6.1332 41 1 4.3091 -1.8326 -7.9820 42 1 4.6959 3.7304 -8.2456 43 1 4.0508 4.8162 -6.1542 44 1 3.7873 3.3737 0.8049 45 1 5.1616 2.8866 -0.2165 46 1 3.9997 0.9046 0.7155 47 1 3.8528 0.9561 -1.0575 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611315638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:54 Heat of formation + Delta-G solvation = -97.645060 kcal Electronic energy + Delta-G solvation = -26996.950923 eV Core-core repulsion = 23335.796995 eV Total energy + Delta-G solvation = -3661.153928 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.31147 -38.71721 -37.15809 -35.66784 -33.87173 -33.16826 -32.09420 -30.94210 -30.08487 -29.44407 -28.29565 -25.85271 -24.07020 -22.70400 -22.12252 -21.02305 -20.63225 -20.00042 -18.96948 -17.53692 -17.07004 -16.56125 -15.85526 -15.58283 -15.19084 -14.78372 -14.53814 -14.13631 -14.01378 -13.72515 -13.58384 -13.26858 -13.09541 -12.95871 -12.74517 -12.58014 -12.15997 -12.09752 -11.95234 -11.88447 -11.57264 -11.38700 -11.28894 -11.20033 -11.16069 -10.94724 -10.84851 -10.66665 -10.64278 -10.09955 -10.03747 -9.67301 -9.56960 -9.35672 -8.91718 -8.50590 -7.72669 -7.54366 -7.04622 -4.60797 2.23781 2.89799 2.94323 2.99886 3.02982 3.73317 3.86319 3.88734 4.10122 4.49527 4.56170 4.62945 4.73765 4.93527 5.05574 5.15868 5.21523 5.31885 5.44558 5.47315 5.52591 5.58218 5.66704 5.75502 5.79161 5.87820 5.92566 5.94791 6.02976 6.10423 6.14856 6.17540 6.31120 6.32067 6.37842 6.39369 6.76263 6.82118 6.99265 7.11931 7.13893 7.43254 7.55239 7.65817 7.79434 7.85667 8.06747 8.29379 8.39423 8.62726 8.74876 9.13146 9.87465 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.003227 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.377093 B = 8675.617099 C = 9793.874888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.152 4.152 3 C 0.136 3.864 4 O -0.556 6.556 5 C -0.144 4.144 6 C -0.124 4.124 7 C 0.149 3.851 8 N -0.735 5.735 9 C 0.572 3.428 10 O -0.576 6.576 11 C -0.284 4.284 12 C -0.063 4.063 13 C -0.178 4.178 14 C 0.128 3.872 15 C -0.443 4.443 16 H 0.085 0.915 17 C 0.075 3.925 18 N -0.773 5.773 19 Si 0.912 3.088 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.272 1.272 23 C -0.239 4.239 24 C -0.022 4.022 25 C -0.122 4.122 26 C -0.105 4.105 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.370 0.630 33 H 0.075 0.925 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.394 0.606 39 H 0.087 0.913 40 H 0.120 0.880 41 H 0.285 0.715 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.382 -2.209 13.735 14.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.189 4.189 3 C 0.095 3.905 4 O -0.362 6.362 5 C -0.182 4.182 6 C -0.162 4.162 7 C 0.043 3.957 8 N -0.388 5.388 9 C 0.366 3.634 10 O -0.458 6.458 11 C -0.288 4.288 12 C -0.082 4.082 13 C -0.197 4.197 14 C 0.125 3.875 15 C -0.471 4.471 16 H 0.103 0.897 17 C -0.146 4.146 18 N -0.396 5.396 19 Si 0.736 3.264 20 H -0.181 1.181 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.258 4.258 24 C -0.042 4.042 25 C -0.160 4.160 26 C -0.143 4.143 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.218 0.782 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.230 0.770 39 H 0.105 0.895 40 H 0.138 0.862 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.118 0.882 44 H 0.101 0.899 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.040 -1.554 13.849 14.510 hybrid contribution -0.282 -1.198 -0.693 1.413 sum -4.322 -2.752 13.156 14.118 Atomic orbital electron populations 1.21864 0.95766 1.02098 1.01856 1.22213 0.96459 0.97281 1.02981 1.21189 0.94818 0.90374 0.84093 1.86518 1.27932 1.81281 1.40485 1.22231 1.00122 0.96853 0.98984 1.21817 0.96056 0.96242 1.02135 1.20759 0.93928 0.97496 0.83470 1.46039 1.71769 1.13669 1.07342 1.18578 0.75363 0.85820 0.83618 1.90623 1.51812 1.16484 1.86901 1.18936 1.22418 0.94938 0.92509 1.20454 0.98039 0.92910 0.96821 1.20970 1.07014 1.00382 0.91366 1.17783 0.85691 0.91067 0.92937 1.19876 1.34830 0.92222 1.00175 0.89706 1.26091 0.93257 0.98116 0.97162 1.69755 1.25573 1.10453 1.33802 0.86182 0.80130 0.79622 0.80490 1.18059 1.19391 1.19675 1.20720 1.12211 0.96345 0.96564 1.20360 0.94518 0.97613 0.91664 1.21738 1.00132 0.95500 0.98587 1.21506 0.92903 0.97675 1.02208 0.92472 0.91962 0.92871 0.91319 0.90819 0.78236 0.90651 0.91671 0.91141 0.91471 0.89914 0.77014 0.89537 0.86243 0.90334 0.88432 0.88153 0.89942 0.91492 0.91164 0.90791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.21 37.16 0.34 -0.92 16 2 C -0.15 -1.37 5.23 -26.73 -0.14 -1.51 16 3 C 0.14 1.37 0.73 -90.62 -0.07 1.31 16 4 O -0.56 -5.53 11.63 -35.23 -0.41 -5.94 16 5 C -0.14 -1.67 4.27 -26.73 -0.11 -1.78 16 6 C -0.12 -1.65 5.46 -26.73 -0.15 -1.79 16 7 C 0.15 2.12 2.78 -67.93 -0.19 1.93 16 8 N -0.73 -12.09 4.18 -54.81 -0.23 -12.32 16 9 C 0.57 12.04 7.73 -12.42 -0.10 11.95 16 10 O -0.58 -13.63 15.99 5.29 0.08 -13.55 16 11 C -0.28 -6.44 5.89 -104.73 -0.62 -7.06 16 12 C -0.06 -1.38 9.47 -39.61 -0.38 -1.76 16 13 C -0.18 -4.32 8.64 -39.27 -0.34 -4.66 16 14 C 0.13 3.26 5.58 -106.80 -0.60 2.66 16 15 C -0.44 -10.99 9.04 -37.75 -0.34 -11.33 16 16 H 0.08 2.02 7.91 -52.49 -0.42 1.60 16 17 C 0.07 1.73 5.14 -17.31 -0.09 1.64 16 18 N -0.77 -18.34 10.95 55.56 0.61 -17.73 16 19 Si 0.91 17.16 29.60 -169.99 -5.03 12.13 16 20 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 21 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 23 C -0.24 -5.78 9.73 -39.27 -0.38 -6.17 16 24 C -0.02 -0.53 9.52 -39.61 -0.38 -0.90 16 25 C -0.12 -1.41 5.46 -26.73 -0.15 -1.56 16 26 C -0.11 -1.12 4.77 -26.74 -0.13 -1.25 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.52 6.35 -51.93 -0.33 0.20 16 29 H 0.05 0.35 6.89 -51.93 -0.36 -0.01 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.37 2.63 7.53 45.56 0.34 2.98 16 33 H 0.07 1.00 7.60 -51.93 -0.39 0.61 16 34 H 0.06 0.67 6.34 -51.93 -0.33 0.34 16 35 H 0.07 0.85 7.68 -51.93 -0.40 0.45 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.33 7.58 -51.93 -0.39 0.94 16 38 H 0.39 5.91 4.87 -40.82 -0.20 5.71 16 39 H 0.09 1.61 6.37 -52.49 -0.33 1.27 16 40 H 0.12 2.94 6.16 -52.49 -0.32 2.61 16 41 H 0.29 6.07 8.29 -40.82 -0.34 5.73 16 42 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 43 H 0.10 2.30 7.63 -52.49 -0.40 1.90 16 44 H 0.08 0.94 7.68 -51.93 -0.40 0.54 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.07 0.70 8.14 -51.92 -0.42 0.28 16 47 H 0.07 0.79 6.51 -51.93 -0.34 0.45 16 LS Contribution 364.61 15.07 5.49 5.49 Total: -1.00 -28.27 364.61 -9.64 -37.92 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -6.36 Total: 15.21 kcal Atomic # 6 Polarization: -17.40 SS G_CDS: -3.80 Total: -21.20 kcal Atomic # 7 Polarization: -30.43 SS G_CDS: 0.38 Total: -30.05 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.33 Total: -19.49 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -28.27 -9.64 -37.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611315638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.730 kcal (2) G-P(sol) polarization free energy of solvation -28.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds