Wall clock time and date at job start Tue Mar 31 2020 11:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47269 * 2 1 4 4 O 1.42903 * 109.47064 * 64.99891 * 3 2 1 5 5 C 1.53002 * 109.47229 * 305.00210 * 3 2 1 6 6 C 1.52994 * 109.47585 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47251 * 59.99628 * 6 5 3 8 8 N 1.46498 * 109.46983 * 60.00158 * 7 6 5 9 9 C 1.34780 * 119.99895 * 85.00194 * 8 7 6 10 10 O 1.21586 * 119.99823 * 359.97438 * 9 8 7 11 11 C 1.47636 * 120.00233 * 180.02562 * 9 8 7 12 12 C 1.40017 * 119.89069 * 359.72128 * 11 9 8 13 13 C 1.36322 * 120.10223 * 179.76297 * 12 11 9 14 14 C 1.40888 * 119.89223 * 0.51809 * 13 12 11 15 15 C 1.41109 * 120.10565 * 179.72200 * 14 13 12 16 16 H 1.07996 * 119.99955 * 204.65003 * 15 14 13 17 17 C 1.40229 * 119.99889 * 24.63651 * 15 14 13 18 18 N 1.30651 * 119.99768 * 17.88323 * 17 15 14 19 19 Si 1.86792 * 120.00146 * 197.87909 * 17 15 14 20 20 H 1.48499 * 109.47150 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47116 * 120.00254 * 19 17 15 22 22 H 1.48501 * 109.47518 * 240.00644 * 19 17 15 23 23 C 1.40890 * 119.79231 * 359.73525 * 14 13 12 24 24 C 1.36312 * 119.89267 * 359.97438 * 23 14 13 25 25 C 1.53000 * 109.46800 * 300.00499 * 7 6 5 26 26 C 1.52994 * 109.47270 * 59.99853 * 25 7 6 27 27 H 1.09004 * 109.47226 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47194 * 60.00271 * 1 2 3 29 29 H 1.09000 * 109.47036 * 300.00455 * 1 2 3 30 30 H 1.08997 * 109.46976 * 120.00396 * 2 1 3 31 31 H 1.09006 * 109.46772 * 239.99875 * 2 1 3 32 32 H 0.96701 * 114.00278 * 299.99841 * 4 3 2 33 33 H 1.09004 * 109.47107 * 300.00272 * 5 3 2 34 34 H 1.08997 * 109.47183 * 59.99604 * 5 3 2 35 35 H 1.09004 * 109.47020 * 300.00203 * 6 5 3 36 36 H 1.08998 * 109.47845 * 179.97438 * 6 5 3 37 37 H 1.08994 * 109.47285 * 180.02562 * 7 6 5 38 38 H 0.96993 * 120.00043 * 265.00501 * 8 7 6 39 39 H 1.08001 * 119.95172 * 0.02562 * 12 11 9 40 40 H 1.07998 * 120.05547 * 180.22949 * 13 12 11 41 41 H 0.97000 * 119.99571 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.05083 * 179.97438 * 23 14 13 43 43 H 1.07998 * 119.94884 * 179.97438 * 24 23 14 44 44 H 1.09004 * 109.47395 * 299.99379 * 25 7 6 45 45 H 1.09006 * 109.46843 * 179.97438 * 25 7 6 46 46 H 1.09011 * 109.47283 * 179.97438 * 26 25 7 47 47 H 1.09004 * 109.47324 * 60.00254 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 1.6620 2.0813 1.2211 5 6 1.4299 2.1991 -1.1816 6 6 1.9404 3.6414 -1.1821 7 6 3.4653 3.6427 -1.3081 8 7 3.8523 2.9874 -2.5598 9 6 3.8860 3.6931 -3.7076 10 8 3.5947 4.8736 -3.7042 11 6 4.2755 3.0326 -4.9692 12 6 4.6151 1.6743 -4.9697 13 6 4.9708 1.0589 -6.1330 14 6 5.0068 1.7945 -7.3340 15 6 5.3799 1.1635 -8.5397 16 1 5.7906 1.7473 -9.3502 17 6 5.2178 -0.2218 -8.6854 18 7 4.4216 -0.8744 -7.8810 19 14 6.1400 -1.1339 -10.0295 20 1 6.9709 -0.1734 -10.7991 21 1 7.0156 -2.1651 -9.4169 22 1 5.1672 -1.7883 -10.9409 23 6 4.6693 3.1624 -7.3274 24 6 4.3092 3.7677 -6.1604 25 6 4.0752 2.8861 -0.1265 26 6 3.5648 1.4438 -0.1261 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 0.7067 2.1165 1.3673 33 1 1.7182 1.7118 -2.1130 34 1 0.3437 2.1978 -1.0921 35 1 1.6525 4.1290 -0.2506 36 1 1.5062 4.1804 -2.0241 37 1 3.8290 4.6702 -1.3080 38 1 4.0843 2.0456 -2.5626 39 1 4.5912 1.1121 -4.0479 40 1 5.2290 0.0102 -6.1332 41 1 4.3091 -1.8326 -7.9820 42 1 4.6959 3.7304 -8.2456 43 1 4.0508 4.8162 -6.1542 44 1 3.7873 3.3737 0.8049 45 1 5.1616 2.8866 -0.2165 46 1 3.9997 0.9046 0.7155 47 1 3.8528 0.9561 -1.0575 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611315638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:53 Heat of formation + Delta-G solvation = -113.491275 kcal Electronic energy + Delta-G solvation = -26997.638066 eV Core-core repulsion = 23335.796995 eV Total energy + Delta-G solvation = -3661.841071 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.46809 -40.15879 -38.85620 -36.87820 -35.66638 -34.03500 -33.35761 -31.97674 -31.69276 -31.28990 -29.34613 -27.57927 -24.97685 -24.02106 -23.42412 -22.80016 -21.65562 -21.44933 -20.15867 -19.36545 -18.58961 -17.54670 -17.21029 -16.87910 -16.51872 -15.98145 -15.75445 -15.55892 -15.28063 -15.13272 -14.99855 -14.50257 -14.37138 -14.30249 -14.00108 -13.80385 -13.68367 -13.37738 -13.18764 -13.11052 -12.85213 -12.66934 -12.57664 -12.50338 -12.37190 -12.11911 -11.89924 -11.79791 -11.75435 -11.63992 -11.37204 -11.11997 -11.01834 -10.65622 -10.52719 -9.95915 -9.57472 -9.39832 -8.79577 -6.48181 0.45166 1.14672 1.38765 1.42356 1.55356 2.13851 2.18650 2.43703 2.79466 3.33974 3.63136 3.69012 3.75796 3.87102 4.05116 4.16840 4.23057 4.29872 4.34689 4.38921 4.41911 4.45035 4.54130 4.63808 4.65537 4.79812 4.89927 4.92275 5.02846 5.04529 5.09108 5.12260 5.16375 5.17788 5.21070 5.24265 5.30234 5.31821 5.39930 5.50072 5.58287 5.71590 5.83058 5.95308 5.99491 6.22825 6.53999 6.74942 6.77496 6.89248 6.92321 7.49115 8.15909 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016224 B = 0.003227 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.377093 B = 8675.617099 C = 9793.874888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.148 4.148 3 C 0.144 3.856 4 O -0.562 6.562 5 C -0.140 4.140 6 C -0.119 4.119 7 C 0.144 3.856 8 N -0.715 5.715 9 C 0.571 3.429 10 O -0.607 6.607 11 C -0.293 4.293 12 C -0.053 4.053 13 C -0.196 4.196 14 C 0.102 3.898 15 C -0.474 4.474 16 H 0.084 0.916 17 C 0.039 3.961 18 N -0.798 5.798 19 Si 0.987 3.013 20 H -0.258 1.258 21 H -0.259 1.259 22 H -0.264 1.264 23 C -0.254 4.254 24 C -0.033 4.033 25 C -0.112 4.112 26 C -0.109 4.109 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.384 0.616 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.036 0.964 37 H 0.063 0.937 38 H 0.403 0.597 39 H 0.121 0.879 40 H 0.114 0.886 41 H 0.297 0.703 42 H 0.103 0.897 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.427 -3.989 15.201 16.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.186 4.186 3 C 0.103 3.897 4 O -0.370 6.370 5 C -0.178 4.178 6 C -0.158 4.158 7 C 0.040 3.960 8 N -0.367 5.367 9 C 0.365 3.635 10 O -0.491 6.491 11 C -0.298 4.298 12 C -0.072 4.072 13 C -0.216 4.216 14 C 0.099 3.901 15 C -0.502 4.502 16 H 0.102 0.898 17 C -0.180 4.180 18 N -0.421 5.421 19 Si 0.806 3.194 20 H -0.182 1.182 21 H -0.184 1.184 22 H -0.188 1.188 23 C -0.273 4.273 24 C -0.053 4.053 25 C -0.149 4.149 26 C -0.146 4.146 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.233 0.767 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.055 0.945 37 H 0.081 0.919 38 H 0.241 0.759 39 H 0.139 0.861 40 H 0.132 0.868 41 H 0.108 0.892 42 H 0.121 0.879 43 H 0.119 0.881 44 H 0.109 0.891 45 H 0.090 0.910 46 H 0.102 0.898 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.103 -3.350 15.360 16.248 hybrid contribution -0.337 -0.593 -1.060 1.260 sum -4.441 -3.943 14.301 15.485 Atomic orbital electron populations 1.21868 0.94930 1.02541 1.02245 1.22172 0.97209 0.96276 1.02967 1.21045 0.94357 0.90795 0.83497 1.86492 1.29382 1.81244 1.39923 1.22206 1.01114 0.95455 0.99004 1.21747 0.94991 0.97409 1.01608 1.20948 0.94938 0.96798 0.83300 1.45885 1.70100 1.13844 1.06921 1.18399 0.75340 0.85468 0.84307 1.90605 1.53329 1.17765 1.87427 1.19218 1.22017 0.95411 0.93108 1.20691 0.96271 0.92653 0.97567 1.21005 1.08415 1.00254 0.91898 1.18124 0.86411 0.91670 0.93901 1.20131 1.36092 0.93664 1.00271 0.89806 1.26901 0.93482 0.98125 0.99463 1.69765 1.25916 1.11391 1.35035 0.85080 0.78736 0.78136 0.77407 1.18162 1.18368 1.18824 1.20851 1.12904 0.96458 0.97098 1.20496 0.94763 0.97839 0.92170 1.21664 1.00217 0.95864 0.97198 1.21563 0.93427 0.96877 1.02777 0.92080 0.92706 0.91339 0.90690 0.91465 0.76674 0.92480 0.90324 0.89539 0.94504 0.91903 0.75914 0.86104 0.86767 0.89178 0.87931 0.88143 0.89119 0.91036 0.89827 0.90891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.21 71.98 0.66 -1.46 16 2 C -0.15 -2.31 5.23 30.59 0.16 -2.15 16 3 C 0.14 2.55 0.73 -10.80 -0.01 2.54 16 4 O -0.56 -9.41 11.63 -148.98 -1.73 -11.14 16 5 C -0.14 -3.02 4.27 30.59 0.13 -2.89 16 6 C -0.12 -3.07 5.46 30.59 0.17 -2.90 16 7 C 0.14 4.01 2.78 44.99 0.13 4.13 16 8 N -0.72 -23.07 4.18 -445.59 -1.86 -24.93 16 9 C 0.57 24.23 7.73 86.72 0.67 24.90 16 10 O -0.61 -29.30 15.99 -3.99 -0.06 -29.36 16 11 C -0.29 -13.45 5.89 -19.93 -0.12 -13.57 16 12 C -0.05 -2.31 9.47 22.25 0.21 -2.10 16 13 C -0.20 -9.65 8.64 22.47 0.19 -9.45 16 14 C 0.10 5.31 5.58 -21.28 -0.12 5.19 16 15 C -0.47 -23.96 9.04 23.46 0.21 -23.75 16 16 H 0.08 4.09 7.91 -2.91 -0.02 4.07 16 17 C 0.04 1.81 5.14 85.35 0.44 2.25 16 18 N -0.80 -37.72 10.95 21.87 0.24 -37.48 16 19 Si 0.99 34.55 29.60 68.60 2.03 36.58 16 20 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 21 H -0.26 -8.64 7.11 99.48 0.71 -7.93 16 22 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 23 C -0.25 -12.70 9.73 22.47 0.22 -12.48 16 24 C -0.03 -1.63 9.52 22.25 0.21 -1.42 16 25 C -0.11 -2.35 5.46 30.59 0.17 -2.18 16 26 C -0.11 -2.04 4.77 30.59 0.15 -1.89 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.05 0.81 6.35 -2.39 -0.02 0.80 16 29 H 0.07 0.70 6.89 -2.39 -0.02 0.68 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 32 H 0.38 4.17 7.53 -74.06 -0.56 3.62 16 33 H 0.06 1.45 7.60 -2.38 -0.02 1.43 16 34 H 0.08 1.48 6.34 -2.39 -0.02 1.47 16 35 H 0.09 1.95 7.68 -2.38 -0.02 1.93 16 36 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.06 2.02 7.58 -2.39 -0.02 2.00 16 38 H 0.40 11.50 4.87 -92.71 -0.45 11.05 16 39 H 0.12 4.30 6.37 -2.91 -0.02 4.28 16 40 H 0.11 5.66 6.16 -2.91 -0.02 5.65 16 41 H 0.30 12.39 8.29 -92.71 -0.77 11.62 16 42 H 0.10 4.84 8.06 -2.91 -0.02 4.82 16 43 H 0.10 4.78 7.63 -2.91 -0.02 4.76 16 44 H 0.09 1.82 7.68 -2.38 -0.02 1.80 16 45 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 46 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 47 H 0.07 1.38 6.51 -2.39 -0.02 1.36 16 Total: -1.00 -61.73 364.61 2.07 -59.66 By element: Atomic # 1 Polarization: 43.92 SS G_CDS: -0.01 Total: 43.91 kcal Atomic # 6 Polarization: -40.71 SS G_CDS: 3.47 Total: -37.24 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: -1.62 Total: -62.41 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -1.80 Total: -40.50 kcal Atomic # 14 Polarization: 34.55 SS G_CDS: 2.03 Total: 36.58 kcal Total: -61.73 2.07 -59.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611315638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.832 kcal (2) G-P(sol) polarization free energy of solvation -61.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds