Wall clock time and date at job start Tue Mar 31 2020 11:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47558 * 2 1 4 4 O 1.42901 * 109.47009 * 64.99788 * 3 2 1 5 5 C 1.52992 * 109.47379 * 184.99730 * 3 2 1 6 6 C 1.53003 * 109.47246 * 179.97438 * 5 3 2 7 7 C 1.52996 * 109.47249 * 300.00425 * 6 5 3 8 8 N 1.46504 * 109.47149 * 179.97438 * 7 6 5 9 9 C 1.34777 * 119.99938 * 154.99999 * 8 7 6 10 10 O 1.21548 * 120.00020 * 359.97438 * 9 8 7 11 11 C 1.47883 * 119.99977 * 179.97438 * 9 8 7 12 12 C 1.39924 * 120.02662 * 359.97438 * 11 9 8 13 13 C 1.38327 * 120.36112 * 180.02562 * 12 11 9 14 14 C 1.37750 * 120.41077 * 0.02562 * 13 12 11 15 15 C 1.40750 * 120.04038 * 359.97438 * 14 13 12 16 16 C 1.41438 * 120.17568 * 180.02562 * 15 14 13 17 17 H 1.07994 * 120.00251 * 334.74063 * 16 15 14 18 18 C 1.39940 * 119.99623 * 154.73712 * 16 15 14 19 19 N 1.30824 * 120.00311 * 342.79533 * 18 16 15 20 20 Si 1.86800 * 119.99665 * 162.79246 * 18 16 15 21 21 H 1.48501 * 109.47237 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47059 * 120.00074 * 20 18 16 23 23 H 1.48495 * 109.47483 * 240.00096 * 20 18 16 24 24 C 1.38995 * 120.02811 * 180.02562 * 11 9 8 25 25 C 1.53002 * 109.47271 * 59.99756 * 7 6 5 26 26 C 1.52998 * 109.46966 * 299.99811 * 25 7 6 27 27 H 1.08990 * 109.47334 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47064 * 300.00430 * 1 2 3 29 29 H 1.09002 * 109.46895 * 59.99811 * 1 2 3 30 30 H 1.09002 * 109.47353 * 239.99887 * 2 1 3 31 31 H 1.09002 * 109.47072 * 119.99664 * 2 1 3 32 32 H 0.96702 * 113.99836 * 300.00106 * 4 3 2 33 33 H 1.09003 * 109.47380 * 60.00262 * 5 3 2 34 34 H 1.08999 * 109.47335 * 299.99890 * 5 3 2 35 35 H 1.09000 * 109.47650 * 179.97438 * 6 5 3 36 36 H 1.09002 * 109.47042 * 60.00482 * 6 5 3 37 37 H 1.08996 * 109.47271 * 299.99580 * 7 6 5 38 38 H 0.96998 * 119.99991 * 334.99802 * 8 7 6 39 39 H 1.08005 * 119.82020 * 0.02562 * 12 11 9 40 40 H 1.08002 * 119.79377 * 180.02562 * 13 12 11 41 41 H 1.08007 * 119.98086 * 179.97438 * 14 13 12 42 42 H 0.96998 * 119.99581 * 179.97438 * 19 18 16 43 43 H 1.07999 * 120.20203 * 359.69698 * 24 11 9 44 44 H 1.08998 * 109.47045 * 60.00507 * 25 7 6 45 45 H 1.08999 * 109.47262 * 180.02562 * 25 7 6 46 46 H 1.08992 * 109.47406 * 300.00321 * 26 25 7 47 47 H 1.08997 * 109.46969 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 1.6620 2.0814 1.2210 5 6 3.5648 1.4442 -0.1256 6 6 4.0748 2.8868 -0.1263 7 6 3.4648 3.6429 -1.3082 8 7 3.9527 5.0243 -1.3084 9 6 3.9862 5.7269 -2.4581 10 8 3.6121 5.2143 -3.4947 11 6 4.4782 7.1215 -2.4582 12 6 4.9085 7.7123 -1.2650 13 6 5.3695 9.0165 -1.2571 14 6 5.4099 9.7489 -2.4231 15 6 4.9812 9.1715 -3.6331 16 6 5.0220 9.9207 -4.8320 17 1 4.9790 10.9992 -4.7966 18 6 5.1181 9.2643 -6.0642 19 7 5.5042 8.0153 -6.1117 20 14 4.6949 10.1717 -7.6412 21 1 4.2892 11.5632 -7.3181 22 1 5.8831 10.1971 -8.5317 23 1 3.5767 9.4764 -8.3277 24 6 4.5125 7.8469 -3.6434 25 6 1.9399 3.6411 -1.1825 26 6 1.4300 2.1986 -1.1820 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.7067 2.1165 1.3672 33 1 3.8532 0.9569 -1.0570 34 1 3.9994 0.9052 0.7162 35 1 5.1612 2.8881 -0.2153 36 1 3.7865 3.3745 0.8049 37 1 3.7532 3.1552 -2.2394 38 1 4.2516 5.4332 -0.4812 39 1 4.8805 7.1470 -0.3452 40 1 5.6998 9.4633 -0.3310 41 1 5.7707 10.7668 -2.4089 42 1 5.5705 7.5603 -6.9658 43 1 4.1852 7.3936 -4.5674 44 1 1.6516 4.1289 -0.2514 45 1 1.5053 4.1794 -2.0248 46 1 1.7184 1.7109 -2.1131 47 1 0.3437 2.1974 -1.0920 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611334582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:59 Heat of formation + Delta-G solvation = -96.661201 kcal Electronic energy + Delta-G solvation = -26578.133715 eV Core-core repulsion = 22917.022451 eV Total energy + Delta-G solvation = -3661.111264 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.19121 -38.91012 -37.06359 -35.65075 -33.76238 -33.38287 -32.39829 -30.98046 -30.12050 -29.41418 -27.92793 -25.30385 -24.19308 -22.96959 -22.13799 -21.01442 -20.62846 -20.06371 -19.34292 -17.70367 -16.68028 -16.50480 -15.74883 -15.63858 -15.05024 -14.76421 -14.67054 -14.50197 -14.15330 -13.80182 -13.48980 -13.32371 -13.09551 -12.95332 -12.67002 -12.46979 -12.38562 -12.21509 -11.96215 -11.74910 -11.59775 -11.47443 -11.27464 -11.16511 -11.08619 -11.05061 -10.71721 -10.54974 -10.43186 -10.22086 -9.99254 -9.83629 -9.66435 -9.20986 -8.94729 -8.56728 -7.60479 -7.49565 -6.78108 -4.39851 2.24070 2.82249 3.08867 3.13768 3.15915 3.69394 3.89827 3.93841 4.06049 4.42018 4.53638 4.62891 4.66276 4.81655 4.97802 5.05420 5.16141 5.23959 5.39658 5.44777 5.48908 5.51005 5.62716 5.63236 5.65971 5.75941 5.81072 5.84946 5.92732 6.01434 6.09261 6.11257 6.16798 6.30195 6.34169 6.44575 6.74161 6.96388 7.01698 7.05831 7.23327 7.40453 7.49353 7.72592 7.79188 7.94994 8.14631 8.22856 8.52895 8.82331 8.85447 9.01425 10.16772 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021671 B = 0.002777 C = 0.002574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.720824 B =10079.092472 C =10876.210175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.151 4.151 3 C 0.133 3.867 4 O -0.554 6.554 5 C -0.099 4.099 6 C -0.123 4.123 7 C 0.149 3.851 8 N -0.732 5.732 9 C 0.564 3.436 10 O -0.548 6.548 11 C -0.128 4.128 12 C -0.216 4.216 13 C -0.099 4.099 14 C -0.211 4.211 15 C 0.098 3.902 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.784 5.784 20 Si 0.909 3.091 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.271 1.271 24 C -0.092 4.092 25 C -0.125 4.125 26 C -0.142 4.142 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.371 0.629 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.398 0.602 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.095 0.905 42 H 0.283 0.717 43 H 0.134 0.866 44 H 0.068 0.932 45 H 0.067 0.933 46 H 0.072 0.928 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.854 -13.804 11.027 18.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.188 4.188 3 C 0.093 3.907 4 O -0.360 6.360 5 C -0.137 4.137 6 C -0.161 4.161 7 C 0.044 3.956 8 N -0.385 5.385 9 C 0.355 3.645 10 O -0.426 6.426 11 C -0.132 4.132 12 C -0.236 4.236 13 C -0.117 4.117 14 C -0.231 4.231 15 C 0.095 3.905 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.409 5.409 20 Si 0.734 3.266 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.196 1.196 24 C -0.112 4.112 25 C -0.164 4.164 26 C -0.181 4.181 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.218 0.782 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.233 0.767 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.095 0.905 43 H 0.151 0.849 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.091 0.909 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.402 -14.308 10.151 18.675 hybrid contribution -0.565 0.405 -0.383 0.794 sum -6.967 -13.903 9.768 18.364 Atomic orbital electron populations 1.21874 0.95736 1.02066 1.02003 1.22207 0.96443 0.97286 1.02894 1.21226 0.94957 0.90315 0.84247 1.86547 1.27996 1.81224 1.40249 1.21454 0.92688 0.97118 1.02457 1.21718 1.00213 0.95326 0.98816 1.20826 0.93112 0.82675 0.99025 1.46014 1.67653 1.13636 1.11172 1.18841 0.76533 0.86586 0.82542 1.90681 1.48540 1.71369 1.31994 1.19502 1.05849 0.92226 0.95586 1.20359 1.11640 0.96382 0.95250 1.20440 1.00243 0.94287 0.96746 1.21106 1.08665 0.99858 0.93479 1.17614 0.88573 0.91756 0.92520 1.19607 1.44569 0.94813 0.89950 0.90077 1.25961 0.92335 0.94874 1.01430 1.69797 1.31468 1.11143 1.28482 0.86242 0.79021 0.80690 0.80694 1.18361 1.19941 1.19580 1.21639 0.98649 0.94765 0.96159 1.21848 0.95925 0.95984 1.02632 1.22242 1.00468 0.96543 0.98817 0.92498 0.92714 0.91985 0.91006 0.91232 0.78161 0.90527 0.91027 0.91409 0.90578 0.90019 0.76677 0.89212 0.88914 0.88635 0.90545 0.84873 0.91326 0.91394 0.90921 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.21 37.15 0.34 -0.66 16 2 C -0.15 -1.11 5.23 -26.73 -0.14 -1.25 16 3 C 0.13 1.20 0.73 -90.62 -0.07 1.13 16 4 O -0.55 -5.28 11.63 -35.23 -0.41 -5.69 16 5 C -0.10 -0.96 4.94 -26.73 -0.13 -1.09 16 6 C -0.12 -1.41 5.25 -26.73 -0.14 -1.55 16 7 C 0.15 2.14 2.45 -67.93 -0.17 1.97 16 8 N -0.73 -12.44 5.03 -54.74 -0.28 -12.71 16 9 C 0.56 12.50 7.74 -12.31 -0.10 12.41 16 10 O -0.55 -13.81 16.00 5.32 0.09 -13.72 16 11 C -0.13 -3.07 5.87 -105.04 -0.62 -3.69 16 12 C -0.22 -4.61 9.55 -38.92 -0.37 -4.98 16 13 C -0.10 -2.14 10.01 -39.73 -0.40 -2.53 16 14 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 15 C 0.10 2.62 5.56 -106.87 -0.59 2.02 16 16 C -0.46 -12.20 9.05 -37.73 -0.34 -12.54 16 17 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 18 C 0.07 1.86 5.15 -17.34 -0.09 1.77 16 19 N -0.78 -20.97 10.97 55.55 0.61 -20.36 16 20 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 21 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 C -0.09 -2.48 8.24 -38.44 -0.32 -2.80 16 25 C -0.13 -1.66 5.35 -26.73 -0.14 -1.80 16 26 C -0.14 -1.45 4.43 -26.73 -0.12 -1.56 16 27 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.30 6.89 -51.92 -0.36 -0.06 16 29 H 0.06 0.40 6.34 -51.93 -0.33 0.08 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.37 2.48 7.53 45.56 0.34 2.82 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.89 7.68 -51.93 -0.40 0.49 16 37 H 0.08 1.34 7.58 -51.93 -0.39 0.94 16 38 H 0.40 5.99 6.62 -40.82 -0.27 5.72 16 39 H 0.09 1.59 6.38 -52.48 -0.33 1.26 16 40 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 41 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 42 H 0.28 6.94 8.30 -40.82 -0.34 6.61 16 43 H 0.13 3.89 5.76 -52.49 -0.30 3.58 16 44 H 0.07 0.89 7.68 -51.93 -0.40 0.50 16 45 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.07 0.61 6.34 -51.93 -0.33 0.28 16 LS Contribution 369.31 15.07 5.57 5.57 Total: -1.00 -30.39 369.31 -9.77 -40.16 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -6.55 Total: 13.47 kcal Atomic # 6 Polarization: -16.84 SS G_CDS: -3.77 Total: -20.61 kcal Atomic # 7 Polarization: -33.41 SS G_CDS: 0.33 Total: -33.07 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: -0.32 Total: -19.41 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.39 -9.77 -40.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611334582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.499 kcal (2) G-P(sol) polarization free energy of solvation -30.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds