Wall clock time and date at job start Tue Mar 31 2020 12:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46873 * 2 1 4 4 N 1.46500 * 110.45623 * 298.22354 * 3 2 1 5 5 C 1.34770 * 120.00270 * 294.67874 * 4 3 2 6 6 O 1.21279 * 120.00186 * 5.07044 * 5 4 3 7 7 C 1.50704 * 120.00320 * 185.07993 * 5 4 3 8 8 C 1.52996 * 109.47166 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.47417 * 305.00113 * 8 7 5 10 10 C 1.50700 * 109.46951 * 65.00353 * 8 7 5 11 11 H 1.08006 * 119.99743 * 237.47431 * 10 8 7 12 12 C 1.37879 * 120.00504 * 57.47004 * 10 8 7 13 13 N 1.31515 * 119.99597 * 2.45789 * 12 10 8 14 14 Si 1.86795 * 120.00012 * 182.46026 * 12 10 8 15 15 H 1.48499 * 109.47153 * 90.00102 * 14 12 10 16 16 H 1.48499 * 109.46883 * 209.99775 * 14 12 10 17 17 H 1.48495 * 109.47317 * 330.00088 * 14 12 10 18 18 C 1.50700 * 109.46801 * 184.99688 * 8 7 5 19 19 C 1.38235 * 119.99892 * 153.09003 * 18 8 7 20 20 C 1.38234 * 120.00165 * 179.97438 * 19 18 8 21 21 C 1.38239 * 119.99872 * 0.09516 * 20 19 18 22 22 C 1.38231 * 119.99759 * 359.84141 * 21 20 19 23 23 C 1.38228 * 120.00192 * 0.13261 * 22 21 20 24 24 C 1.54505 * 110.50848 * 175.62297 * 3 2 1 25 25 C 1.54799 * 103.90888 * 241.18630 * 24 3 2 26 26 O 1.44425 * 104.85809 * 336.11891 * 25 24 3 27 27 C 1.44421 * 105.27260 * 40.46111 * 26 25 24 28 28 H 1.09003 * 109.46957 * 184.83692 * 1 2 3 29 29 H 1.08997 * 109.47108 * 304.82890 * 1 2 3 30 30 H 1.08995 * 109.47407 * 64.83359 * 1 2 3 31 31 H 1.08999 * 109.46855 * 239.99620 * 2 1 3 32 32 H 1.09001 * 109.47073 * 119.99917 * 2 1 3 33 33 H 0.97003 * 119.99445 * 114.67635 * 4 3 2 34 34 H 1.09003 * 109.47028 * 59.99201 * 7 5 4 35 35 H 1.09001 * 109.46810 * 299.99587 * 7 5 4 36 36 H 0.97001 * 119.99479 * 179.97438 * 13 12 10 37 37 H 1.08003 * 119.99945 * 359.70367 * 19 18 8 38 38 H 1.08001 * 120.00141 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.99734 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.99753 * 180.11117 * 22 21 20 41 41 H 1.08005 * 120.00343 * 179.97438 * 23 22 21 42 42 H 1.08999 * 110.51277 * 359.85523 * 24 3 2 43 43 H 1.08990 * 110.51434 * 122.57209 * 24 3 2 44 44 H 1.09002 * 110.38728 * 217.24842 * 25 24 3 45 45 H 1.09000 * 110.40472 * 94.99642 * 25 24 3 46 46 H 1.09002 * 110.37047 * 200.65775 * 27 26 25 47 47 H 1.09002 * 110.46556 * 78.37152 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5987 2.1416 -1.2094 5 6 2.0485 1.7481 -2.4174 6 8 2.7449 0.7598 -2.5127 7 6 1.6865 2.5364 -3.6497 8 6 2.3206 1.8815 -4.8785 9 1 3.3953 1.7846 -4.7247 10 6 1.7179 0.5162 -5.0873 11 1 2.3532 -0.3570 -5.1086 12 6 0.3555 0.3816 -5.2510 13 7 -0.4127 1.4489 -5.2734 14 14 -0.3992 -1.3165 -5.4410 15 1 -0.7576 -1.8515 -4.1029 16 1 -1.6205 -1.2243 -6.2806 17 1 0.5807 -2.2238 -6.0905 18 6 2.0618 2.7358 -6.0927 19 6 2.9370 2.7002 -7.1621 20 6 2.6994 3.4834 -8.2761 21 6 1.5875 4.3037 -8.3199 22 6 0.7117 4.3383 -7.2510 23 6 0.9490 3.5547 -6.1373 24 6 3.5808 1.4720 0.1104 25 6 3.8447 2.2364 1.4304 26 8 2.6615 3.0383 1.6369 27 6 1.5556 2.1878 1.2634 28 1 -0.3633 -1.0240 0.0867 29 1 -0.3633 0.5869 0.8435 30 1 -0.3634 0.4370 -0.9301 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.9826 2.8877 -1.1407 34 1 2.0569 3.5567 -3.5503 35 1 0.6027 2.5530 -3.7650 36 1 -1.3711 1.3542 -5.3890 37 1 3.8088 2.0638 -7.1255 38 1 3.3834 3.4559 -9.1115 39 1 1.4021 4.9160 -9.1901 40 1 -0.1579 4.9779 -7.2860 41 1 0.2649 3.5820 -5.3020 42 1 3.9791 0.4590 0.1676 43 1 4.0142 2.0066 -0.7347 44 1 4.7229 2.8744 1.3307 45 1 3.9772 1.5361 2.2551 46 1 0.6751 2.7886 1.0353 47 1 1.3339 1.4786 2.0608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619445809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:50 Heat of formation + Delta-G solvation = -59.296200 kcal Electronic energy + Delta-G solvation = -27887.568681 eV Core-core repulsion = 24228.077684 eV Total energy + Delta-G solvation = -3659.490996 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.28928 -38.55246 -37.77004 -35.06609 -34.04372 -31.99860 -31.02937 -30.52926 -29.81018 -28.53181 -27.74478 -25.72935 -23.92641 -22.72085 -22.15177 -21.49807 -20.62661 -19.39988 -18.85332 -16.81457 -16.44929 -15.96993 -15.70812 -15.65303 -15.22869 -14.95385 -14.47427 -14.14192 -13.84700 -13.77776 -13.31985 -13.28576 -12.98854 -12.65361 -12.51111 -12.21623 -11.99576 -11.75791 -11.58200 -11.49167 -11.40233 -11.36497 -10.94300 -10.89457 -10.79972 -10.68434 -10.51915 -10.38792 -10.17078 -9.92293 -9.79406 -9.29843 -9.14954 -8.68877 -8.46230 -8.35481 -7.78607 -7.42899 -5.96289 -4.06542 2.51543 2.60189 3.30054 3.36285 3.41706 3.69986 3.77235 3.91654 4.43412 4.60251 4.83365 4.95776 4.99278 5.12255 5.26264 5.27592 5.39269 5.49741 5.55123 5.64784 5.75807 5.82765 5.84344 5.89282 5.93507 6.02635 6.09364 6.19195 6.24945 6.38158 6.46034 6.47953 6.56896 6.59852 6.72594 6.74014 6.79161 7.13934 7.15659 7.16654 7.27334 7.48146 7.55395 7.70194 7.93407 8.09198 8.19092 8.27825 8.36444 8.90747 9.23205 9.56786 10.97561 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013848 B = 0.004635 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.402636 B = 6039.336098 C = 7191.716332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C 0.153 3.847 4 N -0.735 5.735 5 C 0.527 3.473 6 O -0.522 6.522 7 C -0.137 4.137 8 C 0.089 3.911 9 H 0.036 0.964 10 C -0.469 4.469 11 H 0.058 0.942 12 C 0.061 3.939 13 N -0.889 5.889 14 Si 0.889 3.111 15 H -0.283 1.283 16 H -0.289 1.289 17 H -0.276 1.276 18 C -0.026 4.026 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.154 4.154 22 C -0.144 4.144 23 C -0.065 4.065 24 C -0.150 4.150 25 C 0.043 3.957 26 O -0.375 6.375 27 C 0.046 3.954 28 H 0.050 0.950 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.394 0.606 34 H 0.052 0.948 35 H 0.128 0.872 36 H 0.259 0.741 37 H 0.105 0.895 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.100 0.900 41 H 0.136 0.864 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.094 0.906 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.196 3.917 9.920 10.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.167 4.167 3 C 0.065 3.935 4 N -0.390 5.390 5 C 0.316 3.684 6 O -0.396 6.396 7 C -0.178 4.178 8 C 0.070 3.930 9 H 0.055 0.945 10 C -0.506 4.506 11 H 0.077 0.923 12 C -0.139 4.139 13 N -0.528 5.528 14 Si 0.718 3.282 15 H -0.209 1.209 16 H -0.215 1.215 17 H -0.201 1.201 18 C -0.027 4.027 19 C -0.149 4.149 20 C -0.161 4.161 21 C -0.172 4.172 22 C -0.162 4.162 23 C -0.083 4.083 24 C -0.189 4.189 25 C -0.033 4.033 26 O -0.293 6.293 27 C -0.032 4.032 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.228 0.772 34 H 0.070 0.930 35 H 0.145 0.855 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.119 0.881 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.154 0.846 42 H 0.101 0.899 43 H 0.102 0.898 44 H 0.108 0.892 45 H 0.075 0.925 46 H 0.112 0.888 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.526 3.432 9.885 10.764 hybrid contribution -1.019 -0.945 -0.377 1.440 sum 1.507 2.487 9.508 9.942 Atomic orbital electron populations 1.21730 0.95674 1.01315 1.01912 1.21913 0.96275 0.95153 1.03399 1.21458 0.93524 0.92843 0.85628 1.46264 1.50918 1.36464 1.05354 1.21063 0.78449 0.85096 0.83745 1.90580 1.37538 1.25635 1.85860 1.21915 1.07145 0.96011 0.92692 1.17610 0.95198 0.93188 0.86974 0.94533 1.20959 0.91761 0.91583 1.46320 0.92340 1.24873 0.97266 0.96414 0.95329 1.69709 1.04770 1.27229 1.51112 0.86619 0.78637 0.85130 0.77840 1.20901 1.21485 1.20087 1.20312 0.93083 0.92213 0.97062 1.20883 1.00130 0.99666 0.94202 1.20794 0.98206 0.99118 0.97958 1.20757 0.96632 1.01382 0.98425 1.21029 0.98953 1.01005 0.95239 1.21274 0.95803 0.92882 0.98342 1.23309 0.95605 1.01836 0.98121 1.23530 0.89187 0.94312 0.96320 1.89120 1.15428 1.37048 1.87742 1.23706 0.90852 0.93765 0.94843 0.93049 0.93419 0.91918 0.89005 0.92082 0.77241 0.92995 0.85474 0.93022 0.87709 0.88139 0.88341 0.88138 0.84603 0.89906 0.89836 0.89244 0.92467 0.88757 0.91158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.58 37.16 0.36 -1.69 16 2 C -0.13 -1.86 4.60 -26.73 -0.12 -1.99 16 3 C 0.15 2.13 0.66 -130.26 -0.09 2.04 16 4 N -0.74 -11.55 4.58 -46.16 -0.21 -11.76 16 5 C 0.53 10.48 6.68 -10.99 -0.07 10.41 16 6 O -0.52 -11.90 12.33 5.56 0.07 -11.83 16 7 C -0.14 -2.85 4.06 -27.88 -0.11 -2.97 16 8 C 0.09 2.10 1.96 -92.93 -0.18 1.92 16 9 H 0.04 0.88 7.92 -51.93 -0.41 0.47 16 10 C -0.47 -12.30 7.27 -34.44 -0.25 -12.55 16 11 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 12 C 0.06 1.57 5.13 -17.82 -0.09 1.48 16 13 N -0.89 -22.32 8.05 55.43 0.45 -21.88 16 14 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 C -0.03 -0.59 4.63 -104.62 -0.48 -1.08 16 19 C -0.13 -2.79 9.71 -39.58 -0.38 -3.18 16 20 C -0.14 -2.76 10.05 -39.58 -0.40 -3.15 16 21 C -0.15 -2.90 10.05 -39.58 -0.40 -3.30 16 22 C -0.14 -2.86 10.05 -39.59 -0.40 -3.25 16 23 C -0.06 -1.40 7.35 -39.59 -0.29 -1.69 16 24 C -0.15 -2.06 5.55 -24.99 -0.14 -2.20 16 25 C 0.04 0.50 7.64 38.11 0.29 0.79 16 26 O -0.37 -4.93 11.65 -35.23 -0.41 -5.34 16 27 C 0.05 0.53 5.71 37.93 0.22 0.75 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.54 7.02 -51.93 -0.36 0.17 16 30 H 0.06 1.01 7.85 -51.93 -0.41 0.61 16 31 H 0.09 1.68 6.44 -51.93 -0.33 1.34 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.39 5.40 8.28 -40.82 -0.34 5.07 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.13 2.81 4.82 -51.93 -0.25 2.56 16 36 H 0.26 6.43 8.31 -40.82 -0.34 6.09 16 37 H 0.10 2.13 8.06 -52.48 -0.42 1.71 16 38 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 40 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.14 3.00 5.26 -52.48 -0.28 2.73 16 42 H 0.08 1.12 7.73 -51.93 -0.40 0.72 16 43 H 0.08 1.33 7.17 -51.93 -0.37 0.96 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.09 1.00 7.75 -51.93 -0.40 0.60 16 47 H 0.07 0.72 7.70 -51.93 -0.40 0.32 16 LS Contribution 365.17 15.07 5.50 5.50 Total: -1.00 -28.38 365.17 -9.48 -37.86 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -7.31 Total: 10.88 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -2.55 Total: -19.66 kcal Atomic # 7 Polarization: -33.88 SS G_CDS: 0.23 Total: -33.64 kcal Atomic # 8 Polarization: -16.83 SS G_CDS: -0.34 Total: -17.18 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -28.38 -9.48 -37.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619445809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.436 kcal (2) G-P(sol) polarization free energy of solvation -28.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds