Wall clock time and date at job start Tue Mar 31 2020 12:21:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46873 * 2 1 4 4 N 1.46500 * 110.45623 * 298.22354 * 3 2 1 5 5 C 1.34770 * 120.00270 * 294.67874 * 4 3 2 6 6 O 1.21279 * 120.00186 * 5.07044 * 5 4 3 7 7 C 1.50704 * 120.00320 * 185.07993 * 5 4 3 8 8 C 1.52996 * 109.47166 * 179.97438 * 7 5 4 9 9 H 1.08999 * 109.47417 * 305.00113 * 8 7 5 10 10 C 1.50700 * 109.46951 * 65.00353 * 8 7 5 11 11 H 1.08006 * 119.99743 * 237.47431 * 10 8 7 12 12 C 1.37879 * 120.00504 * 57.47004 * 10 8 7 13 13 N 1.31515 * 119.99597 * 2.45789 * 12 10 8 14 14 Si 1.86795 * 120.00012 * 182.46026 * 12 10 8 15 15 H 1.48499 * 109.47153 * 90.00102 * 14 12 10 16 16 H 1.48499 * 109.46883 * 209.99775 * 14 12 10 17 17 H 1.48495 * 109.47317 * 330.00088 * 14 12 10 18 18 C 1.50700 * 109.46801 * 184.99688 * 8 7 5 19 19 C 1.38235 * 119.99892 * 153.09003 * 18 8 7 20 20 C 1.38234 * 120.00165 * 179.97438 * 19 18 8 21 21 C 1.38239 * 119.99872 * 0.09516 * 20 19 18 22 22 C 1.38231 * 119.99759 * 359.84141 * 21 20 19 23 23 C 1.38228 * 120.00192 * 0.13261 * 22 21 20 24 24 C 1.54505 * 110.50848 * 175.62297 * 3 2 1 25 25 C 1.54799 * 103.90888 * 241.18630 * 24 3 2 26 26 O 1.44425 * 104.85809 * 336.11891 * 25 24 3 27 27 C 1.44421 * 105.27260 * 40.46111 * 26 25 24 28 28 H 1.09003 * 109.46957 * 184.83692 * 1 2 3 29 29 H 1.08997 * 109.47108 * 304.82890 * 1 2 3 30 30 H 1.08995 * 109.47407 * 64.83359 * 1 2 3 31 31 H 1.08999 * 109.46855 * 239.99620 * 2 1 3 32 32 H 1.09001 * 109.47073 * 119.99917 * 2 1 3 33 33 H 0.97003 * 119.99445 * 114.67635 * 4 3 2 34 34 H 1.09003 * 109.47028 * 59.99201 * 7 5 4 35 35 H 1.09001 * 109.46810 * 299.99587 * 7 5 4 36 36 H 0.97001 * 119.99479 * 179.97438 * 13 12 10 37 37 H 1.08003 * 119.99945 * 359.70367 * 19 18 8 38 38 H 1.08001 * 120.00141 * 179.97438 * 20 19 18 39 39 H 1.08003 * 119.99734 * 179.97438 * 21 20 19 40 40 H 1.08003 * 119.99753 * 180.11117 * 22 21 20 41 41 H 1.08005 * 120.00343 * 179.97438 * 23 22 21 42 42 H 1.08999 * 110.51277 * 359.85523 * 24 3 2 43 43 H 1.08990 * 110.51434 * 122.57209 * 24 3 2 44 44 H 1.09002 * 110.38728 * 217.24842 * 25 24 3 45 45 H 1.09000 * 110.40472 * 94.99642 * 25 24 3 46 46 H 1.09002 * 110.37047 * 200.65775 * 27 26 25 47 47 H 1.09002 * 110.46556 * 78.37152 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5987 2.1416 -1.2094 5 6 2.0485 1.7481 -2.4174 6 8 2.7449 0.7598 -2.5127 7 6 1.6865 2.5364 -3.6497 8 6 2.3206 1.8815 -4.8785 9 1 3.3953 1.7846 -4.7247 10 6 1.7179 0.5162 -5.0873 11 1 2.3532 -0.3570 -5.1086 12 6 0.3555 0.3816 -5.2510 13 7 -0.4127 1.4489 -5.2734 14 14 -0.3992 -1.3165 -5.4410 15 1 -0.7576 -1.8515 -4.1029 16 1 -1.6205 -1.2243 -6.2806 17 1 0.5807 -2.2238 -6.0905 18 6 2.0618 2.7358 -6.0927 19 6 2.9370 2.7002 -7.1621 20 6 2.6994 3.4834 -8.2761 21 6 1.5875 4.3037 -8.3199 22 6 0.7117 4.3383 -7.2510 23 6 0.9490 3.5547 -6.1373 24 6 3.5808 1.4720 0.1104 25 6 3.8447 2.2364 1.4304 26 8 2.6615 3.0383 1.6369 27 6 1.5556 2.1878 1.2634 28 1 -0.3633 -1.0240 0.0867 29 1 -0.3633 0.5869 0.8435 30 1 -0.3634 0.4370 -0.9301 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 0.9826 2.8877 -1.1407 34 1 2.0569 3.5567 -3.5503 35 1 0.6027 2.5530 -3.7650 36 1 -1.3711 1.3542 -5.3890 37 1 3.8088 2.0638 -7.1255 38 1 3.3834 3.4559 -9.1115 39 1 1.4021 4.9160 -9.1901 40 1 -0.1579 4.9779 -7.2860 41 1 0.2649 3.5820 -5.3020 42 1 3.9791 0.4590 0.1676 43 1 4.0142 2.0066 -0.7347 44 1 4.7229 2.8744 1.3307 45 1 3.9772 1.5361 2.2551 46 1 0.6751 2.7886 1.0353 47 1 1.3339 1.4786 2.0608 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619445809.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:48 Heat of formation + Delta-G solvation = -74.856546 kcal Electronic energy + Delta-G solvation = -27888.243428 eV Core-core repulsion = 24228.077684 eV Total energy + Delta-G solvation = -3660.165744 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.51044 -40.08644 -39.22404 -36.41736 -35.72916 -33.40886 -32.84314 -31.61123 -31.39467 -30.04314 -28.94039 -27.53029 -25.00396 -24.44131 -23.20362 -23.06810 -22.07826 -20.98557 -20.24922 -18.44842 -17.70190 -17.62099 -17.01444 -16.85692 -16.70231 -16.49800 -15.89285 -15.57247 -15.44467 -15.16208 -14.83061 -14.66348 -14.34551 -14.25084 -13.79231 -13.61656 -13.35256 -13.23814 -13.13950 -12.98044 -12.86991 -12.76080 -12.60419 -12.52137 -12.23482 -12.04089 -11.88507 -11.79339 -11.68710 -11.61463 -11.06807 -11.01076 -10.75867 -10.53492 -10.12409 -9.80479 -9.39358 -9.11393 -7.92532 -6.08597 0.89605 1.00975 1.34800 1.37783 1.45540 2.12012 2.44127 2.46646 2.96339 3.21850 3.38245 3.55003 3.80783 3.90233 4.13079 4.22966 4.30516 4.35492 4.40944 4.43089 4.47188 4.52786 4.58271 4.70398 4.71516 4.80701 4.81282 4.83663 4.91229 4.93709 5.06568 5.09367 5.11856 5.15211 5.29273 5.36331 5.41333 5.54447 5.63613 5.68458 5.75128 5.88274 5.91082 5.95298 6.09765 6.37613 6.43465 6.58774 6.83260 6.89684 7.53513 7.70924 8.96228 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013848 B = 0.004635 C = 0.003892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.402636 B = 6039.336098 C = 7191.716332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.126 4.126 3 C 0.145 3.855 4 N -0.721 5.721 5 C 0.525 3.475 6 O -0.558 6.558 7 C -0.128 4.128 8 C 0.091 3.909 9 H 0.013 0.987 10 C -0.486 4.486 11 H 0.026 0.974 12 C 0.037 3.963 13 N -0.883 5.883 14 Si 0.925 3.075 15 H -0.284 1.284 16 H -0.281 1.281 17 H -0.286 1.286 18 C -0.050 4.050 19 C -0.151 4.151 20 C -0.141 4.141 21 C -0.149 4.149 22 C -0.148 4.148 23 C -0.077 4.077 24 C -0.151 4.151 25 C 0.050 3.950 26 O -0.388 6.388 27 C 0.052 3.948 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.031 0.969 31 H 0.046 0.954 32 H 0.088 0.912 33 H 0.405 0.595 34 H 0.068 0.932 35 H 0.118 0.882 36 H 0.260 0.740 37 H 0.101 0.899 38 H 0.131 0.869 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.079 0.921 43 H 0.054 0.946 44 H 0.099 0.901 45 H 0.083 0.917 46 H 0.108 0.892 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.119 5.395 10.728 12.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.164 4.164 3 C 0.059 3.941 4 N -0.375 5.375 5 C 0.314 3.686 6 O -0.436 6.436 7 C -0.168 4.168 8 C 0.072 3.928 9 H 0.031 0.969 10 C -0.524 4.524 11 H 0.044 0.956 12 C -0.162 4.162 13 N -0.522 5.522 14 Si 0.754 3.246 15 H -0.210 1.210 16 H -0.206 1.206 17 H -0.212 1.212 18 C -0.051 4.051 19 C -0.170 4.170 20 C -0.159 4.159 21 C -0.167 4.167 22 C -0.166 4.166 23 C -0.095 4.095 24 C -0.190 4.190 25 C -0.027 4.027 26 O -0.307 6.307 27 C -0.025 4.025 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.241 0.759 34 H 0.086 0.914 35 H 0.135 0.865 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.149 0.851 39 H 0.153 0.847 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.098 0.902 43 H 0.072 0.928 44 H 0.117 0.883 45 H 0.101 0.899 46 H 0.126 0.874 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 1.426 4.945 10.717 11.888 hybrid contribution -0.633 -1.383 -0.665 1.660 sum 0.793 3.562 10.052 10.694 Atomic orbital electron populations 1.21697 0.94972 1.01870 1.01644 1.21850 0.96829 0.95253 1.02487 1.21691 0.93826 0.92837 0.85785 1.46070 1.50091 1.36405 1.04943 1.20925 0.78313 0.84544 0.84808 1.90568 1.39340 1.27076 1.86572 1.21730 1.06037 0.96742 0.92331 1.17492 0.93712 0.92688 0.88903 0.96872 1.20885 0.91981 0.91920 1.47629 0.95556 1.25185 0.97314 0.98305 0.95441 1.69793 1.04605 1.27272 1.50573 0.86067 0.77985 0.82992 0.77560 1.21013 1.20599 1.21221 1.20301 0.94384 0.93313 0.97067 1.21062 1.00237 1.00647 0.95022 1.21148 0.98895 0.98028 0.97851 1.21187 0.95560 1.00815 0.99103 1.21352 0.99950 1.00618 0.94674 1.21239 0.95445 0.93654 0.99161 1.23266 0.95391 1.01719 0.98644 1.23592 0.89093 0.94543 0.95459 1.89111 1.16100 1.37849 1.87675 1.23777 0.90800 0.94076 0.93814 0.92788 0.90152 0.94941 0.93536 0.89344 0.75936 0.91355 0.86469 0.92996 0.88052 0.85107 0.84673 0.85618 0.85462 0.90188 0.92759 0.88321 0.89917 0.87381 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.81 9.58 71.98 0.69 -3.12 16 2 C -0.13 -3.58 4.60 30.60 0.14 -3.44 16 3 C 0.15 3.93 0.66 4.62 0.00 3.93 16 4 N -0.72 -22.85 4.58 -418.36 -1.92 -24.77 16 5 C 0.53 21.83 6.68 87.66 0.59 22.42 16 6 O -0.56 -27.15 12.33 -3.03 -0.04 -27.19 16 7 C -0.13 -5.53 4.06 29.85 0.12 -5.41 16 8 C 0.09 4.52 1.96 -12.29 -0.02 4.49 16 9 H 0.01 0.68 7.92 -2.39 -0.02 0.66 16 10 C -0.49 -26.87 7.27 25.60 0.19 -26.69 16 11 H 0.03 1.57 7.81 -2.91 -0.02 1.55 16 12 C 0.04 1.97 5.13 84.66 0.43 2.41 16 13 N -0.88 -44.85 8.05 21.45 0.17 -44.67 16 14 Si 0.93 44.44 29.54 68.60 2.03 46.47 16 15 H -0.28 -13.59 7.11 99.48 0.71 -12.88 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 18 C -0.05 -2.33 4.63 -19.87 -0.09 -2.42 16 19 C -0.15 -6.54 9.71 22.27 0.22 -6.32 16 20 C -0.14 -5.18 10.05 22.27 0.22 -4.96 16 21 C -0.15 -5.15 10.05 22.27 0.22 -4.93 16 22 C -0.15 -5.55 10.05 22.27 0.22 -5.33 16 23 C -0.08 -3.31 7.35 22.27 0.16 -3.15 16 24 C -0.15 -4.15 5.55 31.72 0.18 -3.98 16 25 C 0.05 1.04 7.64 72.60 0.55 1.59 16 26 O -0.39 -9.18 11.65 -148.98 -1.74 -10.92 16 27 C 0.05 1.06 5.71 72.48 0.41 1.48 16 28 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.08 1.57 7.02 -2.39 -0.02 1.55 16 30 H 0.03 1.04 7.85 -2.39 -0.02 1.02 16 31 H 0.05 1.77 6.44 -2.39 -0.02 1.76 16 32 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.40 10.89 8.28 -92.71 -0.77 10.13 16 34 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 35 H 0.12 5.32 4.82 -2.39 -0.01 5.31 16 36 H 0.26 12.85 8.31 -92.71 -0.77 12.08 16 37 H 0.10 4.30 8.06 -2.91 -0.02 4.27 16 38 H 0.13 3.94 8.06 -2.91 -0.02 3.92 16 39 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 40 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 41 H 0.13 5.65 5.26 -2.91 -0.02 5.64 16 42 H 0.08 2.20 7.73 -2.39 -0.02 2.18 16 43 H 0.05 1.80 7.17 -2.39 -0.02 1.78 16 44 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.11 1.92 7.75 -2.39 -0.02 1.91 16 47 H 0.10 1.53 7.70 -2.39 -0.02 1.52 16 Total: -1.00 -64.02 365.17 2.95 -61.07 By element: Atomic # 1 Polarization: 33.22 SS G_CDS: 0.20 Total: 33.42 kcal Atomic # 6 Polarization: -37.66 SS G_CDS: 4.24 Total: -33.42 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -1.74 Total: -69.44 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -1.77 Total: -38.11 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -64.02 2.95 -61.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619445809.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.782 kcal (2) G-P(sol) polarization free energy of solvation -64.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds