Wall clock time and date at job start Tue Mar 31 2020 12:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47388 * 2 1 4 4 C 1.52994 * 110.88719 * 62.42282 * 3 2 1 5 5 C 1.55164 * 111.00364 * 298.54674 * 3 2 1 6 6 C 1.54322 * 102.94166 * 206.42285 * 5 3 2 7 7 N 1.47020 * 107.27199 * 22.19402 * 6 5 3 8 8 C 1.34772 * 125.64812 * 181.02338 * 7 6 5 9 9 O 1.21282 * 120.00096 * 180.02562 * 8 7 6 10 10 C 1.50702 * 120.00020 * 0.02562 * 8 7 6 11 11 C 1.50698 * 109.47279 * 179.97438 * 10 8 7 12 12 C 1.38304 * 119.92786 * 90.00119 * 11 10 8 13 13 C 1.38103 * 120.06873 * 179.97438 * 12 11 10 14 14 C 1.38878 * 119.93137 * 0.02562 * 13 12 11 15 15 O 1.35751 * 120.07119 * 180.02562 * 14 13 12 16 16 C 1.34838 * 116.99901 * 354.46592 * 15 14 13 17 17 H 1.07999 * 119.99562 * 5.05950 * 16 15 14 18 18 C 1.38647 * 120.00139 * 185.05303 * 16 15 14 19 19 N 1.31560 * 119.99842 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00237 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47090 * 59.99850 * 20 18 16 22 22 H 1.48501 * 109.47463 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46986 * 300.00361 * 20 18 16 24 24 C 1.38882 * 119.86309 * 0.28342 * 14 13 12 25 25 C 1.38110 * 119.92649 * 359.40189 * 24 14 13 26 26 C 1.47428 * 108.70424 * 1.28571 * 7 6 5 27 27 H 1.09002 * 109.47354 * 59.99985 * 1 2 3 28 28 H 1.08995 * 109.47600 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46945 * 300.00199 * 1 2 3 30 30 H 1.09004 * 109.46945 * 239.99800 * 2 1 3 31 31 H 1.09002 * 109.47354 * 120.00015 * 2 1 3 32 32 H 1.08997 * 109.47370 * 297.57909 * 4 3 2 33 33 H 1.09006 * 109.46759 * 57.57683 * 4 3 2 34 34 H 1.08998 * 109.47351 * 177.57058 * 4 3 2 35 35 H 1.08996 * 110.71992 * 88.05918 * 5 3 2 36 36 H 1.09000 * 110.71705 * 324.78721 * 5 3 2 37 37 H 1.08994 * 109.88146 * 262.77321 * 6 5 3 38 38 H 1.08999 * 110.01150 * 141.68143 * 6 5 3 39 39 H 1.08997 * 109.47003 * 60.00600 * 10 8 7 40 40 H 1.08994 * 109.47597 * 300.00061 * 10 8 7 41 41 H 1.08000 * 119.97029 * 0.02562 * 12 11 10 42 42 H 1.07999 * 120.03486 * 180.02562 * 13 12 11 43 43 H 0.96998 * 119.99733 * 180.02562 * 19 18 16 44 44 H 1.07996 * 120.03406 * 179.72142 * 24 14 13 45 45 H 1.07992 * 119.96448 * 180.31774 * 25 24 14 46 46 H 1.09001 * 110.36455 * 94.48388 * 26 7 6 47 47 H 1.08999 * 110.36768 * 216.80854 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5980 2.1773 1.2670 5 6 1.5728 2.1976 -1.2724 6 6 2.6597 3.2783 -1.4516 7 7 3.8609 2.8108 -0.7445 8 6 5.0260 3.4813 -0.6473 9 8 5.9552 2.9971 -0.0366 10 6 5.1741 4.8328 -1.2974 11 6 6.5609 5.3641 -1.0414 12 6 7.5830 5.0814 -1.9293 13 6 8.8548 5.5673 -1.6978 14 6 9.1071 6.3400 -0.5718 15 8 10.3561 6.8195 -0.3417 16 6 11.3310 6.4157 -1.1811 17 1 11.0869 5.8068 -2.0390 18 6 12.6468 6.7821 -0.9428 19 7 12.9441 7.5235 0.1026 20 14 13.9974 6.2233 -2.1060 21 1 13.7219 6.7419 -3.4699 22 1 15.3051 6.7438 -1.6327 23 1 14.0387 4.7392 -2.1398 24 6 8.0801 6.6168 0.3213 25 6 6.8089 6.1334 0.0808 26 6 3.5820 1.4844 -0.1647 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5096 2.2281 1.2966 33 1 1.9606 1.6404 2.1436 34 1 2.0090 3.1869 1.2636 35 1 0.5966 2.6552 -1.1127 36 1 1.5498 1.5275 -2.1318 37 1 2.3198 4.2206 -1.0221 38 1 2.8815 3.4124 -2.5104 39 1 4.4392 5.5200 -0.8785 40 1 5.0132 4.7390 -2.3713 41 1 7.3861 4.4808 -2.8050 42 1 9.6524 5.3466 -2.3917 43 1 13.8646 7.7802 0.2691 44 1 8.2743 7.2136 1.2002 45 1 6.0088 6.3525 0.7722 46 1 3.9152 0.6971 -0.8409 47 1 4.0694 1.3841 0.8051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758666934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:21 Heat of formation + Delta-G solvation = -50.126104 kcal Electronic energy + Delta-G solvation = -25938.637531 eV Core-core repulsion = 22279.544180 eV Total energy + Delta-G solvation = -3659.093351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.46448 -39.05910 -38.16616 -36.37235 -34.66099 -32.41634 -31.44145 -30.43144 -30.08208 -29.67886 -27.66273 -26.25509 -25.06368 -23.58602 -23.21531 -21.90487 -20.70212 -19.49303 -18.82816 -17.91356 -16.94499 -16.87565 -16.43033 -15.48066 -14.93863 -14.90997 -14.71667 -14.52053 -14.23227 -14.16988 -13.77013 -13.53687 -13.36020 -13.19652 -12.71164 -12.68681 -12.63286 -12.48235 -12.37464 -12.18840 -12.13824 -11.77027 -11.45856 -11.36993 -11.20232 -10.99409 -10.90222 -10.82248 -10.75545 -10.67479 -10.57606 -10.38835 -9.63818 -9.26613 -8.75943 -8.67707 -8.08086 -7.09651 -6.38834 -3.97390 2.31024 2.32407 2.81729 3.02006 3.16921 3.19469 3.21161 3.98371 4.02156 4.19972 4.36769 4.58347 4.74226 4.80615 4.86963 4.92888 4.99385 5.12482 5.14759 5.25010 5.26098 5.30067 5.31027 5.38288 5.44340 5.50083 5.56275 5.60254 5.63797 5.69062 5.71025 5.72123 5.73954 5.80029 5.91420 5.92034 6.04109 6.24289 6.28877 6.48614 6.77131 6.98359 7.11877 7.30625 7.43945 7.49507 7.52982 7.90850 8.06486 8.34670 9.06786 9.77771 10.79300 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032241 B = 0.002208 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.256607 B =12676.810893 C =12878.336824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.075 4.075 4 C -0.136 4.136 5 C -0.122 4.122 6 C 0.101 3.899 7 N -0.627 5.627 8 C 0.525 3.475 9 O -0.519 6.519 10 C -0.074 4.074 11 C -0.170 4.170 12 C -0.056 4.056 13 C -0.232 4.232 14 C 0.156 3.844 15 O -0.179 6.179 16 C -0.391 4.391 17 H 0.091 0.909 18 C 0.038 3.962 19 N -0.864 5.864 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.270 1.270 24 C -0.191 4.191 25 C -0.059 4.059 26 C 0.115 3.885 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.126 0.874 43 H 0.270 0.730 44 H 0.116 0.884 45 H 0.107 0.893 46 H 0.064 0.936 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.404 -11.354 -3.370 28.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.076 4.076 4 C -0.193 4.193 5 C -0.159 4.159 6 C -0.022 4.022 7 N -0.364 5.364 8 C 0.314 3.686 9 O -0.393 6.393 10 C -0.114 4.114 11 C -0.171 4.171 12 C -0.075 4.075 13 C -0.251 4.251 14 C 0.103 3.897 15 O -0.082 6.082 16 C -0.467 4.467 17 H 0.108 0.892 18 C -0.166 4.166 19 N -0.499 5.499 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.195 1.195 24 C -0.210 4.210 25 C -0.078 4.078 26 C -0.008 4.008 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.144 0.856 43 H 0.080 0.920 44 H 0.135 0.865 45 H 0.126 0.874 46 H 0.083 0.917 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.469 -11.289 -2.750 27.994 hybrid contribution 0.633 -0.365 -0.685 1.001 sum -24.836 -11.654 -3.434 27.648 Atomic orbital electron populations 1.21805 0.95470 1.01618 1.02063 1.21453 0.96171 0.94544 1.02419 1.21828 0.94333 0.95827 0.95624 1.21765 1.01075 1.00429 0.96048 1.22751 0.98156 0.97255 0.97780 1.21998 0.85243 0.97906 0.97037 1.48585 1.12805 1.19749 1.55274 1.20773 0.80371 0.87015 0.80450 1.90753 1.38178 1.68992 1.41404 1.20378 0.97130 0.92742 1.01120 1.18653 0.93473 1.06013 0.98973 1.20504 0.92338 0.97063 0.97576 1.21100 0.97443 1.05945 1.00646 1.19377 0.86736 0.91136 0.92481 1.83978 1.12528 1.60395 1.51302 1.21276 0.85370 1.33631 1.06415 0.89163 1.25281 0.97316 0.96559 0.97422 1.70035 1.19840 1.33797 1.26240 0.85786 0.79176 0.79090 0.79395 1.19540 1.20312 1.19525 1.20153 0.91893 1.08019 1.00975 1.20392 0.95438 0.96458 0.95484 1.22291 0.94116 0.85130 0.99277 0.92549 0.92804 0.92431 0.91649 0.91565 0.92105 0.92352 0.92339 0.89986 0.90477 0.91431 0.91437 0.89163 0.89183 0.87881 0.85597 0.92045 0.86546 0.87446 0.91736 0.90506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.43 37.16 0.35 -0.36 16 2 C -0.11 -0.61 5.05 -26.73 -0.13 -0.75 16 3 C -0.08 -0.51 0.65 -152.24 -0.10 -0.61 16 4 C -0.14 -0.94 8.23 37.15 0.31 -0.63 16 5 C -0.12 -0.69 4.85 -24.89 -0.12 -0.81 16 6 C 0.10 0.76 6.15 -3.07 -0.02 0.74 16 7 N -0.63 -7.09 3.31 -170.38 -0.56 -7.65 16 8 C 0.52 7.96 7.84 -10.99 -0.09 7.87 16 9 O -0.52 -10.50 16.29 5.56 0.09 -10.41 16 10 C -0.07 -1.00 5.02 -29.03 -0.15 -1.15 16 11 C -0.17 -3.11 4.38 -104.58 -0.46 -3.57 16 12 C -0.06 -1.12 9.69 -39.61 -0.38 -1.50 16 13 C -0.23 -5.37 9.17 -39.39 -0.36 -5.73 16 14 C 0.16 4.00 6.65 -39.11 -0.26 3.74 16 15 O -0.18 -5.30 9.76 0.02 0.00 -5.30 16 16 C -0.39 -11.31 9.49 30.88 0.29 -11.02 16 17 H 0.09 2.42 5.20 -52.49 -0.27 2.15 16 18 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 19 N -0.86 -26.01 13.67 55.48 0.76 -25.25 16 20 Si 0.94 21.15 29.55 -169.99 -5.02 16.13 16 21 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 C -0.19 -4.32 9.99 -39.39 -0.39 -4.71 16 25 C -0.06 -1.15 9.69 -39.61 -0.38 -1.53 16 26 C 0.11 1.16 5.85 -2.41 -0.01 1.15 16 27 H 0.06 0.24 7.32 -51.93 -0.38 -0.14 16 28 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.27 6.66 -51.93 -0.35 -0.08 16 30 H 0.06 0.37 8.10 -51.93 -0.42 -0.05 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.34 6.75 -51.93 -0.35 -0.01 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.48 7.89 -51.93 -0.41 0.07 16 35 H 0.08 0.36 8.02 -51.93 -0.42 -0.05 16 36 H 0.08 0.40 8.04 -51.93 -0.42 -0.02 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 1.01 8.08 -51.93 -0.42 0.59 16 40 H 0.09 1.02 8.08 -51.93 -0.42 0.60 16 41 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.13 2.89 5.64 -52.49 -0.30 2.60 16 43 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 45 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 46 H 0.06 0.65 8.01 -51.93 -0.42 0.23 16 47 H 0.08 0.91 7.95 -51.93 -0.41 0.50 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -34.71 380.48 -8.51 -43.22 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.50 Total: 1.43 kcal Atomic # 6 Polarization: -15.89 SS G_CDS: -2.01 Total: -17.90 kcal Atomic # 7 Polarization: -33.09 SS G_CDS: 0.19 Total: -32.90 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.09 Total: -15.71 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.71 -8.51 -43.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758666934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.903 kcal (2) G-P(sol) polarization free energy of solvation -34.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds