Wall clock time and date at job start Tue Mar 31 2020 12:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47388 * 2 1 4 4 C 1.52994 * 110.88719 * 62.42282 * 3 2 1 5 5 C 1.55164 * 111.00364 * 298.54674 * 3 2 1 6 6 C 1.54322 * 102.94166 * 206.42285 * 5 3 2 7 7 N 1.47020 * 107.27199 * 22.19402 * 6 5 3 8 8 C 1.34772 * 125.64812 * 181.02338 * 7 6 5 9 9 O 1.21282 * 120.00096 * 180.02562 * 8 7 6 10 10 C 1.50702 * 120.00020 * 0.02562 * 8 7 6 11 11 C 1.50698 * 109.47279 * 179.97438 * 10 8 7 12 12 C 1.38304 * 119.92786 * 90.00119 * 11 10 8 13 13 C 1.38103 * 120.06873 * 179.97438 * 12 11 10 14 14 C 1.38878 * 119.93137 * 0.02562 * 13 12 11 15 15 O 1.35751 * 120.07119 * 180.02562 * 14 13 12 16 16 C 1.34838 * 116.99901 * 354.46592 * 15 14 13 17 17 H 1.07999 * 119.99562 * 5.05950 * 16 15 14 18 18 C 1.38647 * 120.00139 * 185.05303 * 16 15 14 19 19 N 1.31560 * 119.99842 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00237 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47090 * 59.99850 * 20 18 16 22 22 H 1.48501 * 109.47463 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46986 * 300.00361 * 20 18 16 24 24 C 1.38882 * 119.86309 * 0.28342 * 14 13 12 25 25 C 1.38110 * 119.92649 * 359.40189 * 24 14 13 26 26 C 1.47428 * 108.70424 * 1.28571 * 7 6 5 27 27 H 1.09002 * 109.47354 * 59.99985 * 1 2 3 28 28 H 1.08995 * 109.47600 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46945 * 300.00199 * 1 2 3 30 30 H 1.09004 * 109.46945 * 239.99800 * 2 1 3 31 31 H 1.09002 * 109.47354 * 120.00015 * 2 1 3 32 32 H 1.08997 * 109.47370 * 297.57909 * 4 3 2 33 33 H 1.09006 * 109.46759 * 57.57683 * 4 3 2 34 34 H 1.08998 * 109.47351 * 177.57058 * 4 3 2 35 35 H 1.08996 * 110.71992 * 88.05918 * 5 3 2 36 36 H 1.09000 * 110.71705 * 324.78721 * 5 3 2 37 37 H 1.08994 * 109.88146 * 262.77321 * 6 5 3 38 38 H 1.08999 * 110.01150 * 141.68143 * 6 5 3 39 39 H 1.08997 * 109.47003 * 60.00600 * 10 8 7 40 40 H 1.08994 * 109.47597 * 300.00061 * 10 8 7 41 41 H 1.08000 * 119.97029 * 0.02562 * 12 11 10 42 42 H 1.07999 * 120.03486 * 180.02562 * 13 12 11 43 43 H 0.96998 * 119.99733 * 180.02562 * 19 18 16 44 44 H 1.07996 * 120.03406 * 179.72142 * 24 14 13 45 45 H 1.07992 * 119.96448 * 180.31774 * 25 24 14 46 46 H 1.09001 * 110.36455 * 94.48388 * 26 7 6 47 47 H 1.08999 * 110.36768 * 216.80854 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5980 2.1773 1.2670 5 6 1.5728 2.1976 -1.2724 6 6 2.6597 3.2783 -1.4516 7 7 3.8609 2.8108 -0.7445 8 6 5.0260 3.4813 -0.6473 9 8 5.9552 2.9971 -0.0366 10 6 5.1741 4.8328 -1.2974 11 6 6.5609 5.3641 -1.0414 12 6 7.5830 5.0814 -1.9293 13 6 8.8548 5.5673 -1.6978 14 6 9.1071 6.3400 -0.5718 15 8 10.3561 6.8195 -0.3417 16 6 11.3310 6.4157 -1.1811 17 1 11.0869 5.8068 -2.0390 18 6 12.6468 6.7821 -0.9428 19 7 12.9441 7.5235 0.1026 20 14 13.9974 6.2233 -2.1060 21 1 13.7219 6.7419 -3.4699 22 1 15.3051 6.7438 -1.6327 23 1 14.0387 4.7392 -2.1398 24 6 8.0801 6.6168 0.3213 25 6 6.8089 6.1334 0.0808 26 6 3.5820 1.4844 -0.1647 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5096 2.2281 1.2966 33 1 1.9606 1.6404 2.1436 34 1 2.0090 3.1869 1.2636 35 1 0.5966 2.6552 -1.1127 36 1 1.5498 1.5275 -2.1318 37 1 2.3198 4.2206 -1.0221 38 1 2.8815 3.4124 -2.5104 39 1 4.4392 5.5200 -0.8785 40 1 5.0132 4.7390 -2.3713 41 1 7.3861 4.4808 -2.8050 42 1 9.6524 5.3466 -2.3917 43 1 13.8646 7.7802 0.2691 44 1 8.2743 7.2136 1.2002 45 1 6.0088 6.3525 0.7722 46 1 3.9152 0.6971 -0.8409 47 1 4.0694 1.3841 0.8051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758666934.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:19 Heat of formation + Delta-G solvation = -71.289818 kcal Electronic energy + Delta-G solvation = -25939.555258 eV Core-core repulsion = 22279.544180 eV Total energy + Delta-G solvation = -3660.011079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.40556 -40.69542 -39.34237 -38.08855 -35.42592 -34.40145 -32.90372 -31.79881 -31.12990 -30.28904 -28.72314 -27.64370 -26.76116 -24.34693 -23.79681 -23.65294 -22.29612 -20.33022 -19.87073 -19.60340 -18.81156 -17.94527 -17.26046 -16.63892 -16.36090 -16.28926 -15.76416 -15.60744 -15.46359 -15.40577 -15.24113 -14.91643 -14.51805 -14.37434 -14.14868 -13.89692 -13.61117 -13.47142 -13.23999 -12.96714 -12.92177 -12.85335 -12.73947 -12.60956 -12.47143 -12.32543 -12.26704 -12.14718 -11.81134 -11.53661 -11.37606 -11.30766 -11.19588 -10.91366 -10.73889 -9.78187 -9.59283 -8.91704 -8.47799 -6.16218 0.59675 0.65074 1.32974 1.44338 1.49911 1.69111 2.06544 2.17340 2.82407 3.14196 3.40086 3.51301 3.63870 3.83108 3.85233 4.02768 4.08095 4.18380 4.26445 4.29075 4.35054 4.45240 4.50106 4.57247 4.63340 4.66348 4.73171 4.77161 4.78040 4.80918 4.90284 4.96856 5.07081 5.13201 5.15135 5.16163 5.20531 5.24579 5.26756 5.28625 5.42376 5.47680 5.55231 5.59148 5.69986 5.76140 6.01821 6.20709 6.56789 6.96316 7.24726 7.77306 8.75374 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032241 B = 0.002208 C = 0.002174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.256607 B =12676.810893 C =12878.336824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.106 4.106 3 C -0.066 4.066 4 C -0.135 4.135 5 C -0.114 4.114 6 C 0.091 3.909 7 N -0.620 5.620 8 C 0.521 3.479 9 O -0.586 6.586 10 C -0.070 4.070 11 C -0.146 4.146 12 C -0.060 4.060 13 C -0.243 4.243 14 C 0.112 3.888 15 O -0.233 6.233 16 C -0.415 4.415 17 H 0.100 0.900 18 C -0.025 4.025 19 N -0.921 5.921 20 Si 1.020 2.980 21 H -0.254 1.254 22 H -0.269 1.269 23 H -0.260 1.260 24 C -0.206 4.206 25 C -0.058 4.058 26 C 0.107 3.893 27 H 0.066 0.934 28 H 0.055 0.945 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.046 0.954 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.127 0.873 40 H 0.125 0.875 41 H 0.137 0.863 42 H 0.119 0.881 43 H 0.273 0.727 44 H 0.113 0.887 45 H 0.145 0.855 46 H 0.063 0.937 47 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.436 -12.567 -5.640 33.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.144 4.144 3 C -0.067 4.067 4 C -0.192 4.192 5 C -0.152 4.152 6 C -0.031 4.031 7 N -0.354 5.354 8 C 0.311 3.689 9 O -0.465 6.465 10 C -0.109 4.109 11 C -0.147 4.147 12 C -0.078 4.078 13 C -0.262 4.262 14 C 0.062 3.938 15 O -0.139 6.139 16 C -0.491 4.491 17 H 0.117 0.883 18 C -0.222 4.222 19 N -0.559 5.559 20 Si 0.839 3.161 21 H -0.178 1.178 22 H -0.194 1.194 23 H -0.185 1.185 24 C -0.225 4.225 25 C -0.076 4.076 26 C -0.016 4.016 27 H 0.085 0.915 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.122 0.878 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.145 0.855 40 H 0.143 0.857 41 H 0.155 0.845 42 H 0.136 0.864 43 H 0.082 0.918 44 H 0.131 0.869 45 H 0.163 0.837 46 H 0.081 0.919 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -29.625 -12.519 -5.049 32.556 hybrid contribution 1.465 -0.116 0.051 1.470 sum -28.161 -12.635 -4.998 31.268 Atomic orbital electron populations 1.21785 0.94207 1.02049 1.02596 1.21440 0.97150 0.93627 1.02214 1.21778 0.91591 0.96869 0.96486 1.21760 1.02213 0.99474 0.95719 1.22787 0.98508 0.96760 0.97107 1.22375 0.83912 0.99122 0.97677 1.48597 1.12848 1.19680 1.54296 1.20926 0.80624 0.87453 0.79876 1.90746 1.40639 1.70600 1.44556 1.20476 0.94479 0.92403 1.03552 1.19254 0.95694 1.02839 0.96945 1.20919 0.91180 0.96637 0.99105 1.21227 0.99025 1.06060 0.99932 1.19927 0.86279 0.93108 0.94481 1.83939 1.14111 1.62994 1.52898 1.21784 0.86128 1.34237 1.06993 0.88293 1.26633 0.99744 0.96404 0.99431 1.70186 1.20581 1.36217 1.28928 0.84633 0.75330 0.78909 0.77220 1.17847 1.19386 1.18499 1.20438 0.92904 1.08466 1.00680 1.20854 0.94831 0.95477 0.96408 1.22422 0.96609 0.84723 0.97830 0.91544 0.92545 0.92288 0.91459 0.92348 0.90156 0.93378 0.93509 0.87754 0.89471 0.89750 0.89659 0.85519 0.85680 0.84514 0.86364 0.91813 0.86893 0.83732 0.91852 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.43 71.98 0.68 -0.23 16 2 C -0.11 -0.96 5.05 30.59 0.15 -0.81 16 3 C -0.07 -0.73 0.65 -50.71 -0.03 -0.76 16 4 C -0.13 -1.54 8.23 71.98 0.59 -0.94 16 5 C -0.11 -0.78 4.85 31.78 0.15 -0.63 16 6 C 0.09 0.92 6.15 86.73 0.53 1.45 16 7 N -0.62 -12.21 3.31 -811.36 -2.69 -14.90 16 8 C 0.52 14.44 7.84 87.66 0.69 15.13 16 9 O -0.59 -23.39 16.29 -3.04 -0.05 -23.44 16 10 C -0.07 -1.58 5.02 29.10 0.15 -1.43 16 11 C -0.15 -4.97 4.38 -19.83 -0.09 -5.05 16 12 C -0.06 -2.30 9.69 22.25 0.22 -2.08 16 13 C -0.24 -11.54 9.17 22.39 0.21 -11.34 16 14 C 0.11 6.04 6.65 22.58 0.15 6.19 16 15 O -0.23 -14.83 9.76 -22.83 -0.22 -15.05 16 16 C -0.42 -25.46 9.49 67.92 0.64 -24.81 16 17 H 0.10 5.60 5.20 -2.91 -0.02 5.58 16 18 C -0.02 -1.47 5.49 84.83 0.47 -1.01 16 19 N -0.92 -58.56 13.67 21.61 0.30 -58.27 16 20 Si 1.02 44.66 29.55 68.60 2.03 46.69 16 21 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 22 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 24 C -0.21 -9.58 9.99 22.39 0.22 -9.35 16 25 C -0.06 -2.14 9.69 22.25 0.22 -1.93 16 26 C 0.11 2.02 5.85 86.93 0.51 2.53 16 27 H 0.07 0.29 7.32 -2.39 -0.02 0.27 16 28 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.35 6.66 -2.38 -0.02 0.34 16 30 H 0.07 0.59 8.10 -2.38 -0.02 0.57 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.61 6.75 -2.39 -0.02 0.60 16 33 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.05 0.65 7.89 -2.39 -0.02 0.63 16 35 H 0.10 0.34 8.02 -2.39 -0.02 0.32 16 36 H 0.09 0.48 8.04 -2.39 -0.02 0.46 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.13 2.04 8.08 -2.39 -0.02 2.02 16 40 H 0.13 2.05 8.08 -2.39 -0.02 2.03 16 41 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 42 H 0.12 5.66 5.64 -2.91 -0.02 5.64 16 43 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 44 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 45 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 46 H 0.06 1.21 8.01 -2.39 -0.02 1.19 16 47 H 0.05 1.20 7.95 -2.39 -0.02 1.18 16 Total: -1.00 -83.84 380.48 5.77 -78.07 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: 0.95 Total: 21.98 kcal Atomic # 6 Polarization: -40.53 SS G_CDS: 5.46 Total: -35.08 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -2.39 Total: -73.16 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.27 Total: -38.50 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -83.84 5.77 -78.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758666934.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.780 kcal (2) G-P(sol) polarization free energy of solvation -83.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds