Wall clock time and date at job start Tue Mar 31 2020 12:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47304 * 2 1 4 4 C 1.53006 * 110.91525 * 62.44631 * 3 2 1 5 5 C 1.55164 * 111.00301 * 298.54894 * 3 2 1 6 6 C 1.54324 * 102.94070 * 206.42145 * 5 3 2 7 7 N 1.47029 * 107.27007 * 22.19160 * 6 5 3 8 8 C 1.34774 * 125.64519 * 181.02461 * 7 6 5 9 9 O 1.21276 * 119.99822 * 180.02562 * 8 7 6 10 10 C 1.50705 * 120.00013 * 0.02562 * 8 7 6 11 11 C 1.50705 * 109.46738 * 180.02562 * 10 8 7 12 12 C 1.38327 * 119.96807 * 90.00013 * 11 10 8 13 13 C 1.38279 * 120.13760 * 179.97438 * 12 11 10 14 14 C 1.38122 * 120.06586 * 359.97438 * 13 12 11 15 15 C 1.38849 * 119.93751 * 0.02562 * 14 13 12 16 16 O 1.35743 * 120.07378 * 180.02562 * 15 14 13 17 17 C 1.34831 * 116.99898 * 354.45983 * 16 15 14 18 18 H 1.07994 * 119.99974 * 5.06192 * 17 16 15 19 19 C 1.38662 * 120.00309 * 185.05685 * 17 16 15 20 20 N 1.31557 * 119.99799 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00088 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47172 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47303 * 119.99910 * 21 19 17 24 24 H 1.48496 * 109.47373 * 239.99881 * 21 19 17 25 25 C 1.38081 * 119.96369 * 269.72677 * 11 10 8 26 26 C 1.47419 * 108.70440 * 1.28724 * 7 6 5 27 27 H 1.09001 * 109.47129 * 59.99977 * 1 2 3 28 28 H 1.09007 * 109.46970 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47308 * 300.00054 * 1 2 3 30 30 H 1.08999 * 109.46793 * 239.99834 * 2 1 3 31 31 H 1.09001 * 109.47129 * 120.00023 * 2 1 3 32 32 H 1.08998 * 109.47083 * 297.55301 * 4 3 2 33 33 H 1.09003 * 109.47013 * 57.55110 * 4 3 2 34 34 H 1.08999 * 109.47252 * 177.55164 * 4 3 2 35 35 H 1.09005 * 110.71796 * 88.06000 * 5 3 2 36 36 H 1.09002 * 110.71923 * 324.78273 * 5 3 2 37 37 H 1.09001 * 109.88126 * 262.77382 * 6 5 3 38 38 H 1.08995 * 110.00955 * 141.67955 * 6 5 3 39 39 H 1.08997 * 109.47248 * 60.00253 * 10 8 7 40 40 H 1.08993 * 109.47087 * 299.99862 * 10 8 7 41 41 H 1.08002 * 119.93101 * 0.02562 * 12 11 10 42 42 H 1.07992 * 119.96151 * 180.02562 * 13 12 11 43 43 H 1.08004 * 120.03167 * 180.02562 * 14 13 12 44 44 H 0.96996 * 120.00186 * 179.97438 * 20 19 17 45 45 H 1.08004 * 120.03177 * 359.97438 * 25 11 10 46 46 H 1.08994 * 110.36605 * 94.48012 * 26 7 6 47 47 H 1.09000 * 110.36620 * 216.80801 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5988 2.1778 1.2671 5 6 1.5728 2.1975 -1.2724 6 6 2.6596 3.2784 -1.4516 7 7 3.8609 2.8109 -0.7444 8 6 5.0259 3.4814 -0.6472 9 8 5.9551 2.9972 -0.0365 10 6 5.1740 4.8329 -1.2973 11 6 6.5613 5.3637 -1.0423 12 6 7.5833 5.0811 -1.9305 13 6 8.8574 5.5668 -1.7002 14 6 9.1130 6.3363 -0.5821 15 6 8.0892 6.6217 0.3115 16 8 8.3372 7.3781 1.4110 17 6 9.6200 7.7252 1.6385 18 1 10.3838 7.4723 0.9181 19 6 9.9588 8.4070 2.7975 20 7 9.0283 8.7156 3.6748 21 14 11.7359 8.8885 3.1123 22 1 12.5809 8.4302 1.9805 23 1 11.8342 10.3651 3.2364 24 1 12.2054 8.2538 4.3700 25 6 6.8095 6.1362 0.0749 26 6 3.5820 1.4845 -0.1646 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5104 2.2292 1.2970 33 1 1.9614 1.6409 2.1437 34 1 2.0103 3.1872 1.2634 35 1 0.5964 2.6552 -1.1125 36 1 1.5498 1.5275 -2.1319 37 1 2.3197 4.2207 -1.0220 38 1 2.8814 3.4124 -2.5103 39 1 4.4390 5.5201 -0.8784 40 1 5.0131 4.7390 -2.3712 41 1 7.3856 4.4807 -2.8062 42 1 9.6531 5.3448 -2.3958 43 1 10.1082 6.7157 -0.4029 44 1 9.2652 9.1922 4.4857 45 1 6.0100 6.3605 0.7656 46 1 3.9152 0.6973 -0.8409 47 1 4.0694 1.3842 0.8051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760403412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:33 Heat of formation + Delta-G solvation = -49.808551 kcal Electronic energy + Delta-G solvation = -26125.200311 eV Core-core repulsion = 22466.120730 eV Total energy + Delta-G solvation = -3659.079581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.44347 -39.06135 -38.13604 -36.34887 -34.63159 -32.34084 -31.94594 -30.50320 -29.68572 -29.12485 -27.79590 -26.42496 -25.17446 -23.65285 -23.19498 -21.58166 -20.87852 -19.48121 -18.89793 -17.52105 -16.93473 -16.87566 -16.34441 -15.42658 -15.05575 -14.84044 -14.78121 -14.66607 -14.32309 -14.13476 -13.81099 -13.46393 -13.42466 -13.05993 -12.74321 -12.64072 -12.47518 -12.37482 -12.31376 -12.17092 -12.09863 -11.74969 -11.46277 -11.32796 -11.22315 -10.93452 -10.84884 -10.80056 -10.75006 -10.67792 -10.54036 -10.37350 -9.65796 -9.26077 -8.77462 -8.65066 -7.98812 -7.14072 -6.37708 -3.96431 2.15985 2.46717 2.82594 3.03070 3.17111 3.18827 3.23994 4.02023 4.03181 4.24132 4.41326 4.58822 4.78503 4.84883 4.90937 4.93566 5.01520 5.06309 5.16849 5.23065 5.27129 5.31228 5.31628 5.47076 5.53364 5.54793 5.60324 5.64365 5.67788 5.74134 5.75105 5.76879 5.78869 5.83029 5.96645 6.00539 6.10324 6.23746 6.28535 6.41500 6.73663 6.99425 7.14860 7.34643 7.44343 7.50310 7.52912 7.90617 8.07794 8.34615 9.08308 9.79825 10.80858 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.002501 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.706950 B =11192.970987 C =11907.987043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.108 4.108 3 C -0.075 4.075 4 C -0.137 4.137 5 C -0.121 4.121 6 C 0.100 3.900 7 N -0.626 5.626 8 C 0.530 3.470 9 O -0.518 6.518 10 C -0.088 4.088 11 C -0.033 4.033 12 C -0.196 4.196 13 C -0.075 4.075 14 C -0.231 4.231 15 C 0.155 3.845 16 O -0.181 6.181 17 C -0.389 4.389 18 H 0.092 0.908 19 C 0.037 3.963 20 N -0.865 5.865 21 Si 0.941 3.059 22 H -0.267 1.267 23 H -0.277 1.277 24 H -0.276 1.276 25 C -0.174 4.174 26 C 0.115 3.885 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.107 0.893 43 H 0.126 0.874 44 H 0.268 0.732 45 H 0.113 0.887 46 H 0.065 0.935 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.554 -13.847 -11.003 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.145 4.145 3 C -0.076 4.076 4 C -0.194 4.194 5 C -0.159 4.159 6 C -0.023 4.023 7 N -0.363 5.363 8 C 0.318 3.682 9 O -0.391 6.391 10 C -0.128 4.128 11 C -0.034 4.034 12 C -0.215 4.215 13 C -0.093 4.093 14 C -0.250 4.250 15 C 0.102 3.898 16 O -0.084 6.084 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.166 4.166 20 N -0.500 5.500 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.202 1.202 24 H -0.202 1.202 25 C -0.193 4.193 26 C -0.008 4.008 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.120 0.880 42 H 0.125 0.875 43 H 0.144 0.856 44 H 0.078 0.922 45 H 0.131 0.869 46 H 0.083 0.917 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.098 -13.828 -10.256 24.264 hybrid contribution 0.908 0.220 0.098 0.939 sum -16.190 -13.607 -10.158 23.462 Atomic orbital electron populations 1.21808 0.95472 1.01589 1.02100 1.21448 0.96177 0.94535 1.02383 1.21834 0.94274 0.95829 0.95669 1.21778 1.01098 1.00548 0.96010 1.22751 0.98184 0.97217 0.97757 1.22024 0.85226 0.98053 0.96988 1.48523 1.12712 1.19795 1.55258 1.20459 0.80577 0.86668 0.80449 1.90766 1.38242 1.68903 1.41236 1.20562 0.97101 0.93482 1.01620 1.18680 0.92918 0.96935 0.94831 1.20343 0.93398 1.06615 1.01157 1.20673 0.95856 0.96449 0.96328 1.21171 1.00214 1.06355 0.97282 1.19264 0.93065 0.89719 0.87798 1.83973 1.29459 1.58165 1.36838 1.21366 0.82097 1.37104 1.06001 0.89082 1.25278 0.99939 0.96749 0.94655 1.70052 1.32814 1.37569 1.09613 0.85651 0.80560 0.78430 0.78801 1.19130 1.20216 1.20191 1.19937 0.95552 1.04485 0.99333 1.22297 0.94214 0.84931 0.99320 0.92550 0.92825 0.92394 0.91686 0.91552 0.92089 0.92294 0.92226 0.89941 0.90490 0.91300 0.91406 0.88435 0.88569 0.87996 0.87484 0.85614 0.92190 0.86886 0.91709 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.43 37.16 0.35 -0.43 16 2 C -0.11 -0.66 5.05 -26.73 -0.14 -0.80 16 3 C -0.08 -0.56 0.65 -152.24 -0.10 -0.66 16 4 C -0.14 -1.09 8.23 37.16 0.31 -0.79 16 5 C -0.12 -0.75 4.85 -24.89 -0.12 -0.87 16 6 C 0.10 0.81 6.15 -3.06 -0.02 0.79 16 7 N -0.63 -7.48 3.31 -170.38 -0.56 -8.04 16 8 C 0.53 8.44 7.84 -10.98 -0.09 8.36 16 9 O -0.52 -10.86 16.29 5.56 0.09 -10.77 16 10 C -0.09 -1.27 5.02 -29.03 -0.15 -1.41 16 11 C -0.03 -0.63 4.37 -104.64 -0.46 -1.09 16 12 C -0.20 -3.70 9.70 -39.53 -0.38 -4.09 16 13 C -0.07 -1.49 10.04 -39.61 -0.40 -1.89 16 14 C -0.23 -5.37 9.17 -39.40 -0.36 -5.73 16 15 C 0.15 3.99 6.65 -39.11 -0.26 3.73 16 16 O -0.18 -5.39 9.76 0.07 0.00 -5.39 16 17 C -0.39 -11.32 9.49 30.89 0.29 -11.03 16 18 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 19 C 0.04 1.06 5.49 -17.51 -0.10 0.97 16 20 N -0.86 -26.15 13.67 55.48 0.76 -25.39 16 21 Si 0.94 21.24 29.55 -169.99 -5.02 16.22 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 C -0.17 -3.95 9.64 -39.39 -0.38 -4.33 16 26 C 0.12 1.23 5.85 -2.41 -0.01 1.21 16 27 H 0.06 0.27 7.32 -51.93 -0.38 -0.12 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.30 6.67 -51.93 -0.35 -0.04 16 30 H 0.06 0.38 8.10 -51.93 -0.42 -0.04 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.40 6.76 -51.93 -0.35 0.05 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.57 7.89 -51.93 -0.41 0.16 16 35 H 0.08 0.41 8.02 -51.93 -0.42 0.00 16 36 H 0.08 0.42 8.04 -51.93 -0.42 0.00 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 39 H 0.10 1.22 8.08 -51.93 -0.42 0.81 16 40 H 0.10 1.10 8.08 -51.93 -0.42 0.68 16 41 H 0.10 1.64 8.06 -52.49 -0.42 1.21 16 42 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.13 2.90 5.64 -52.48 -0.30 2.60 16 44 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.11 2.50 8.06 -52.48 -0.42 2.08 16 46 H 0.06 0.66 8.01 -51.93 -0.42 0.25 16 47 H 0.08 0.98 7.95 -51.93 -0.41 0.57 16 LS Contribution 380.48 15.07 5.73 5.73 Total: -1.00 -35.12 380.48 -8.51 -43.62 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -7.50 Total: 2.10 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -2.01 Total: -18.08 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.19 Total: -33.44 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: 0.09 Total: -16.16 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.12 -8.51 -43.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760403412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.186 kcal (2) G-P(sol) polarization free energy of solvation -35.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.623 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds