Wall clock time and date at job start Tue Mar 31 2020 12:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47304 * 2 1 4 4 C 1.53006 * 110.91525 * 62.44631 * 3 2 1 5 5 C 1.55164 * 111.00301 * 298.54894 * 3 2 1 6 6 C 1.54324 * 102.94070 * 206.42145 * 5 3 2 7 7 N 1.47029 * 107.27007 * 22.19160 * 6 5 3 8 8 C 1.34774 * 125.64519 * 181.02461 * 7 6 5 9 9 O 1.21276 * 119.99822 * 180.02562 * 8 7 6 10 10 C 1.50705 * 120.00013 * 0.02562 * 8 7 6 11 11 C 1.50705 * 109.46738 * 180.02562 * 10 8 7 12 12 C 1.38327 * 119.96807 * 90.00013 * 11 10 8 13 13 C 1.38279 * 120.13760 * 179.97438 * 12 11 10 14 14 C 1.38122 * 120.06586 * 359.97438 * 13 12 11 15 15 C 1.38849 * 119.93751 * 0.02562 * 14 13 12 16 16 O 1.35743 * 120.07378 * 180.02562 * 15 14 13 17 17 C 1.34831 * 116.99898 * 354.45983 * 16 15 14 18 18 H 1.07994 * 119.99974 * 5.06192 * 17 16 15 19 19 C 1.38662 * 120.00309 * 185.05685 * 17 16 15 20 20 N 1.31557 * 119.99799 * 359.97438 * 19 17 16 21 21 Si 1.86793 * 120.00088 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.47172 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47303 * 119.99910 * 21 19 17 24 24 H 1.48496 * 109.47373 * 239.99881 * 21 19 17 25 25 C 1.38081 * 119.96369 * 269.72677 * 11 10 8 26 26 C 1.47419 * 108.70440 * 1.28724 * 7 6 5 27 27 H 1.09001 * 109.47129 * 59.99977 * 1 2 3 28 28 H 1.09007 * 109.46970 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47308 * 300.00054 * 1 2 3 30 30 H 1.08999 * 109.46793 * 239.99834 * 2 1 3 31 31 H 1.09001 * 109.47129 * 120.00023 * 2 1 3 32 32 H 1.08998 * 109.47083 * 297.55301 * 4 3 2 33 33 H 1.09003 * 109.47013 * 57.55110 * 4 3 2 34 34 H 1.08999 * 109.47252 * 177.55164 * 4 3 2 35 35 H 1.09005 * 110.71796 * 88.06000 * 5 3 2 36 36 H 1.09002 * 110.71923 * 324.78273 * 5 3 2 37 37 H 1.09001 * 109.88126 * 262.77382 * 6 5 3 38 38 H 1.08995 * 110.00955 * 141.67955 * 6 5 3 39 39 H 1.08997 * 109.47248 * 60.00253 * 10 8 7 40 40 H 1.08993 * 109.47087 * 299.99862 * 10 8 7 41 41 H 1.08002 * 119.93101 * 0.02562 * 12 11 10 42 42 H 1.07992 * 119.96151 * 180.02562 * 13 12 11 43 43 H 1.08004 * 120.03167 * 180.02562 * 14 13 12 44 44 H 0.96996 * 120.00186 * 179.97438 * 20 19 17 45 45 H 1.08004 * 120.03177 * 359.97438 * 25 11 10 46 46 H 1.08994 * 110.36605 * 94.48012 * 26 7 6 47 47 H 1.09000 * 110.36620 * 216.80801 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5988 2.1778 1.2671 5 6 1.5728 2.1975 -1.2724 6 6 2.6596 3.2784 -1.4516 7 7 3.8609 2.8109 -0.7444 8 6 5.0259 3.4814 -0.6472 9 8 5.9551 2.9972 -0.0365 10 6 5.1740 4.8329 -1.2973 11 6 6.5613 5.3637 -1.0423 12 6 7.5833 5.0811 -1.9305 13 6 8.8574 5.5668 -1.7002 14 6 9.1130 6.3363 -0.5821 15 6 8.0892 6.6217 0.3115 16 8 8.3372 7.3781 1.4110 17 6 9.6200 7.7252 1.6385 18 1 10.3838 7.4723 0.9181 19 6 9.9588 8.4070 2.7975 20 7 9.0283 8.7156 3.6748 21 14 11.7359 8.8885 3.1123 22 1 12.5809 8.4302 1.9805 23 1 11.8342 10.3651 3.2364 24 1 12.2054 8.2538 4.3700 25 6 6.8095 6.1362 0.0749 26 6 3.5820 1.4845 -0.1646 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5104 2.2292 1.2970 33 1 1.9614 1.6409 2.1437 34 1 2.0103 3.1872 1.2634 35 1 0.5964 2.6552 -1.1125 36 1 1.5498 1.5275 -2.1319 37 1 2.3197 4.2207 -1.0220 38 1 2.8814 3.4124 -2.5103 39 1 4.4390 5.5201 -0.8784 40 1 5.0131 4.7390 -2.3712 41 1 7.3856 4.4807 -2.8062 42 1 9.6531 5.3448 -2.3958 43 1 10.1082 6.7157 -0.4029 44 1 9.2652 9.1922 4.4857 45 1 6.0100 6.3605 0.7656 46 1 3.9152 0.6973 -0.8409 47 1 4.0694 1.3842 0.8051 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760403412.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:17:31 Heat of formation + Delta-G solvation = -71.424270 kcal Electronic energy + Delta-G solvation = -26126.137638 eV Core-core repulsion = 22466.120730 eV Total energy + Delta-G solvation = -3660.016909 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.45486 -40.70372 -39.36219 -38.09962 -35.45851 -34.35393 -33.48018 -31.27726 -30.87263 -30.32053 -28.95649 -27.60581 -27.10305 -24.46751 -23.81700 -23.27442 -22.55038 -20.46142 -19.83119 -19.34104 -18.71009 -17.99482 -17.26864 -16.80367 -16.44717 -16.33781 -16.07771 -15.64711 -15.45622 -15.36987 -15.24309 -14.97814 -14.41112 -14.35660 -14.06282 -13.90008 -13.62017 -13.50485 -13.25887 -12.99607 -12.94768 -12.88716 -12.75665 -12.62481 -12.52524 -12.36912 -12.24370 -12.09310 -11.82219 -11.56213 -11.39007 -11.32399 -11.22433 -10.95487 -10.80858 -9.66035 -9.63017 -8.99614 -8.48450 -6.16988 0.49508 0.73682 1.32776 1.41938 1.51943 1.62530 2.01615 2.16779 2.82213 3.13131 3.37493 3.42973 3.61655 3.77770 3.82488 4.01917 4.08021 4.24201 4.26685 4.28710 4.32934 4.41050 4.49094 4.55010 4.56925 4.64923 4.70954 4.71406 4.74226 4.79493 4.87159 4.94597 5.04677 5.11783 5.13186 5.13677 5.18838 5.23603 5.25652 5.28373 5.40603 5.46371 5.57920 5.63086 5.70844 5.73346 6.01609 6.21085 6.50768 6.96103 7.17848 7.77657 8.75563 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022169 B = 0.002501 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1262.706950 B =11192.970987 C =11907.987043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.105 4.105 3 C -0.067 4.067 4 C -0.137 4.137 5 C -0.112 4.112 6 C 0.089 3.911 7 N -0.619 5.619 8 C 0.524 3.476 9 O -0.584 6.584 10 C -0.083 4.083 11 C -0.026 4.026 12 C -0.181 4.181 13 C -0.073 4.073 14 C -0.246 4.246 15 C 0.112 3.888 16 O -0.234 6.234 17 C -0.414 4.414 18 H 0.101 0.899 19 C -0.026 4.026 20 N -0.923 5.923 21 Si 1.021 2.979 22 H -0.252 1.252 23 H -0.265 1.265 24 H -0.269 1.269 25 C -0.193 4.193 26 C 0.107 3.893 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.046 0.954 34 H 0.040 0.960 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.117 0.883 40 H 0.141 0.859 41 H 0.147 0.853 42 H 0.147 0.853 43 H 0.119 0.881 44 H 0.273 0.727 45 H 0.104 0.896 46 H 0.071 0.929 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.966 -15.251 -14.488 28.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.143 4.143 3 C -0.068 4.068 4 C -0.194 4.194 5 C -0.150 4.150 6 C -0.032 4.032 7 N -0.353 5.353 8 C 0.314 3.686 9 O -0.464 6.464 10 C -0.122 4.122 11 C -0.027 4.027 12 C -0.199 4.199 13 C -0.090 4.090 14 C -0.265 4.265 15 C 0.062 3.938 16 O -0.141 6.141 17 C -0.490 4.490 18 H 0.118 0.882 19 C -0.223 4.223 20 N -0.561 5.561 21 Si 0.840 3.160 22 H -0.175 1.175 23 H -0.190 1.190 24 H -0.194 1.194 25 C -0.212 4.212 26 C -0.015 4.015 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.099 0.901 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.121 0.879 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.110 0.890 39 H 0.135 0.865 40 H 0.159 0.841 41 H 0.164 0.836 42 H 0.165 0.835 43 H 0.137 0.863 44 H 0.082 0.918 45 H 0.122 0.878 46 H 0.089 0.911 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -18.591 -15.264 -13.813 27.738 hybrid contribution 1.130 0.439 0.966 1.550 sum -17.461 -14.825 -12.847 26.262 Atomic orbital electron populations 1.21791 0.94243 1.02110 1.02543 1.21430 0.97115 0.93330 1.02382 1.21790 0.91664 0.97059 0.96284 1.21779 1.02249 0.99302 0.96054 1.22789 0.98327 0.96692 0.97183 1.22407 0.83962 0.99019 0.97859 1.48555 1.12683 1.19794 1.54279 1.20658 0.80923 0.87079 0.79903 1.90745 1.40794 1.70511 1.44330 1.20646 0.94405 0.92778 1.04400 1.19193 0.95863 0.94688 0.92954 1.20963 0.92495 1.04716 1.01719 1.21138 0.97729 0.94746 0.95432 1.21298 0.99375 1.07497 0.98354 1.19856 0.95077 0.90966 0.87881 1.83933 1.30022 1.60875 1.39305 1.21878 0.82514 1.37701 1.06887 0.88196 1.26645 1.05373 0.96331 0.93922 1.70198 1.35705 1.39583 1.10635 0.84499 0.73907 0.78479 0.79091 1.17483 1.18960 1.19418 1.20194 0.94461 1.05693 1.00885 1.22448 0.96583 0.84632 0.97866 0.91434 0.92363 0.92569 0.90992 0.92401 0.90070 0.93457 0.94078 0.87916 0.88861 0.90445 0.89028 0.86517 0.84089 0.83567 0.83530 0.86327 0.91840 0.87805 0.91069 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.43 71.98 0.68 -0.43 16 2 C -0.10 -1.07 5.05 30.59 0.15 -0.91 16 3 C -0.07 -0.88 0.65 -50.71 -0.03 -0.91 16 4 C -0.14 -2.05 8.23 71.98 0.59 -1.45 16 5 C -0.11 -0.95 4.85 31.79 0.15 -0.79 16 6 C 0.09 1.10 6.15 86.73 0.53 1.63 16 7 N -0.62 -13.71 3.31 -811.37 -2.69 -16.39 16 8 C 0.52 16.12 7.84 87.66 0.69 16.81 16 9 O -0.58 -24.97 16.29 -3.02 -0.05 -25.02 16 10 C -0.08 -2.16 5.02 29.11 0.15 -2.02 16 11 C -0.03 -0.98 4.37 -19.88 -0.09 -1.07 16 12 C -0.18 -6.24 9.70 22.30 0.22 -6.03 16 13 C -0.07 -2.74 10.04 22.25 0.22 -2.52 16 14 C -0.25 -11.70 9.17 22.39 0.21 -11.50 16 15 C 0.11 6.10 6.65 22.58 0.15 6.25 16 16 O -0.23 -15.07 9.76 -22.67 -0.22 -15.29 16 17 C -0.41 -25.49 9.49 67.92 0.64 -24.84 16 18 H 0.10 5.69 5.20 -2.91 -0.02 5.67 16 19 C -0.03 -1.54 5.49 84.84 0.47 -1.07 16 20 N -0.92 -59.01 13.67 21.62 0.30 -58.71 16 21 Si 1.02 44.89 29.55 68.60 2.03 46.91 16 22 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 C -0.19 -9.12 9.64 22.39 0.22 -8.91 16 26 C 0.11 2.23 5.85 86.93 0.51 2.73 16 27 H 0.07 0.37 7.32 -2.39 -0.02 0.35 16 28 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.06 0.44 6.67 -2.39 -0.02 0.43 16 30 H 0.07 0.65 8.10 -2.39 -0.02 0.63 16 31 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.88 6.76 -2.39 -0.02 0.87 16 33 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.04 0.76 7.89 -2.39 -0.02 0.74 16 35 H 0.10 0.54 8.02 -2.38 -0.02 0.52 16 36 H 0.09 0.56 8.04 -2.39 -0.02 0.54 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.12 2.63 8.08 -2.39 -0.02 2.61 16 40 H 0.14 2.43 8.08 -2.39 -0.02 2.41 16 41 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 42 H 0.15 4.35 8.06 -2.91 -0.02 4.32 16 43 H 0.12 5.67 5.64 -2.91 -0.02 5.66 16 44 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 45 H 0.10 4.92 8.06 -2.91 -0.02 4.90 16 46 H 0.07 1.38 8.01 -2.39 -0.02 1.36 16 47 H 0.05 1.24 7.95 -2.39 -0.02 1.23 16 Total: -1.00 -85.21 380.48 5.77 -79.44 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.95 Total: 24.07 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 5.46 Total: -35.02 kcal Atomic # 7 Polarization: -72.72 SS G_CDS: -2.39 Total: -75.11 kcal Atomic # 8 Polarization: -40.04 SS G_CDS: -0.27 Total: -40.31 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.91 kcal Total: -85.21 5.77 -79.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760403412.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.017 kcal (2) G-P(sol) polarization free energy of solvation -85.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds