Wall clock time and date at job start Tue Mar 31 2020 13:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46880 * 2 1 4 4 C 1.52996 * 109.47384 * 120.00256 * 2 1 3 5 5 C 1.53001 * 109.47196 * 65.67118 * 4 2 1 6 6 C 1.53041 * 109.45952 * 185.83273 * 5 4 2 7 7 C 1.53187 * 109.31236 * 178.61257 * 6 5 4 8 8 N 1.46927 * 108.77370 * 54.63637 * 7 6 5 9 9 S 1.65605 * 120.63009 * 126.36818 * 8 7 6 10 10 O 1.42100 * 104.27530 * 333.92859 * 9 8 7 11 11 O 1.42107 * 104.27503 * 206.07343 * 9 8 7 12 12 C 1.81396 * 104.45071 * 90.00167 * 9 8 7 13 13 C 1.52996 * 109.47290 * 180.02562 * 12 9 8 14 14 C 1.53005 * 109.47212 * 179.97438 * 13 12 9 15 15 C 1.50700 * 109.46721 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00558 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99390 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00695 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99839 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47306 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47360 * 120.00074 * 19 17 15 22 22 H 1.48500 * 109.47140 * 240.00186 * 19 17 15 23 23 C 1.46927 * 118.73790 * 306.64238 * 8 7 6 24 24 C 1.52760 * 109.00899 * 53.30957 * 23 8 7 25 25 H 1.08999 * 109.46820 * 300.00051 * 1 2 3 26 26 H 1.09006 * 109.47345 * 59.99927 * 1 2 3 27 27 H 1.08998 * 109.46757 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47153 * 240.00580 * 2 1 3 29 29 H 1.08996 * 109.46930 * 58.67420 * 3 2 1 30 30 H 1.08999 * 109.46786 * 178.67436 * 3 2 1 31 31 H 1.09001 * 109.46958 * 298.67147 * 3 2 1 32 32 H 1.09007 * 109.47022 * 305.67038 * 4 2 1 33 33 H 1.09000 * 109.47531 * 185.67539 * 4 2 1 34 34 H 1.09002 * 109.45808 * 305.80663 * 5 4 2 35 35 H 1.09010 * 109.49711 * 58.66317 * 6 5 4 36 36 H 1.08998 * 109.49969 * 298.57264 * 6 5 4 37 37 H 1.09004 * 109.58960 * 294.84839 * 7 6 5 38 38 H 1.09002 * 109.70592 * 174.49235 * 7 6 5 39 39 H 1.09001 * 109.47332 * 59.99534 * 12 9 8 40 40 H 1.09005 * 109.46654 * 299.99806 * 12 9 8 41 41 H 1.08996 * 109.47163 * 59.99551 * 13 12 9 42 42 H 1.09005 * 109.46852 * 299.99364 * 13 12 9 43 43 H 1.08997 * 109.46914 * 299.99782 * 14 13 12 44 44 H 1.09001 * 109.46667 * 60.00004 * 14 13 12 45 45 H 0.96995 * 120.00665 * 179.97438 * 18 17 15 46 46 H 1.09001 * 109.58288 * 173.14180 * 23 8 7 47 47 H 1.08999 * 109.58825 * 293.56776 * 23 8 7 48 48 H 1.08997 * 109.56474 * 185.54858 * 24 23 8 49 49 H 1.09007 * 109.35948 * 65.49451 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6498 -2.1991 1.1799 6 6 2.0309 -2.8890 2.4917 7 6 1.6074 -4.3600 2.4321 8 7 2.1968 -4.9735 1.2342 9 16 3.1025 -6.3550 1.3524 10 8 3.6172 -6.3242 2.6766 11 8 3.9696 -6.3028 0.2279 12 6 1.9008 -7.7012 1.1678 13 6 2.6237 -9.0464 1.2607 14 6 1.6100 -10.1819 1.1055 15 6 2.3222 -11.5069 1.1965 16 1 3.3908 -11.5362 1.3500 17 6 1.6093 -12.6817 1.0847 18 7 0.3080 -12.6462 0.8982 19 14 2.4921 -14.3242 1.1967 20 1 3.9441 -14.0926 1.4052 21 1 1.9459 -15.1031 2.3368 22 1 2.2885 -15.0826 -0.0637 23 6 1.9726 -4.3348 -0.0698 24 6 2.3873 -2.8671 0.0172 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.6573 1.9632 0.8778 30 1 3.1297 1.4427 0.0238 31 1 1.6962 1.9495 -0.9017 32 1 1.5962 -0.2694 2.1363 33 1 3.1253 -0.6341 1.3014 34 1 0.5743 -2.2837 1.0241 35 1 1.5234 -2.3977 3.3220 36 1 3.1095 -2.8264 2.6358 37 1 0.5206 -4.4256 2.3791 38 1 1.9620 -4.8809 3.3215 39 1 1.4089 -7.6188 0.1986 40 1 1.1555 -7.6341 1.9604 41 1 3.1152 -9.1285 2.2300 42 1 3.3692 -9.1137 0.4683 43 1 0.8648 -10.1145 1.8981 44 1 1.1182 -10.0999 0.1363 45 1 -0.1935 -13.4727 0.8192 46 1 2.5701 -4.8374 -0.8304 47 1 0.9162 -4.3982 -0.3310 48 1 2.1336 -2.3603 -0.9138 49 1 3.4626 -2.8048 0.1846 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760618417.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:10 Heat of formation + Delta-G solvation = -116.943542 kcal Electronic energy + Delta-G solvation = -25238.435871 eV Core-core repulsion = 21711.889049 eV Total energy + Delta-G solvation = -3526.546821 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.34712 -36.95013 -36.52320 -35.70647 -34.65634 -32.68457 -32.18001 -31.26217 -27.83318 -27.52169 -27.34263 -23.75525 -23.67301 -23.07396 -20.84046 -20.47128 -19.85699 -18.65832 -17.60539 -16.62227 -16.12999 -15.82451 -15.55027 -14.94185 -14.85088 -14.56670 -14.50090 -14.27197 -14.12682 -13.99175 -13.42480 -13.01067 -12.71828 -12.59116 -12.53218 -12.26917 -12.04223 -11.94365 -11.93522 -11.80082 -11.76398 -11.55592 -11.42067 -11.29356 -11.20725 -10.96688 -10.93719 -10.83174 -10.65911 -10.47582 -10.39196 -10.30528 -9.95393 -9.49588 -9.20675 -8.88505 -8.41402 -6.05971 -4.08971 0.45593 2.76317 3.29202 3.36688 3.41761 4.02728 4.28159 4.34966 4.41438 4.44184 4.46374 4.62491 4.79435 4.91768 4.96031 4.98817 5.16778 5.19301 5.23512 5.25277 5.29218 5.30571 5.34757 5.38840 5.50343 5.51777 5.57642 5.61610 5.64126 5.68055 5.71362 5.82928 5.89593 5.90396 5.93293 5.98354 6.10449 6.13627 6.26288 6.26665 6.45711 6.55534 6.87518 7.57087 7.66849 7.92238 8.32764 8.97567 9.55783 11.05277 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033826 B = 0.002351 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.574468 B =11909.142978 C =12126.376238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 C -0.148 4.148 4 C -0.110 4.110 5 C -0.088 4.088 6 C -0.126 4.126 7 C 0.117 3.883 8 N -1.004 6.004 9 S 2.597 3.403 10 O -0.961 6.961 11 O -0.961 6.961 12 C -0.609 4.609 13 C -0.106 4.106 14 C 0.030 3.970 15 C -0.525 4.525 16 H 0.059 0.941 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.117 3.883 24 C -0.127 4.127 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.094 0.906 47 H 0.066 0.934 48 H 0.075 0.925 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.804 27.259 -0.641 27.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 C -0.205 4.205 4 C -0.147 4.147 5 C -0.107 4.107 6 C -0.165 4.165 7 C -0.008 4.008 8 N -0.841 5.841 9 S 2.695 3.305 10 O -0.951 6.951 11 O -0.951 6.951 12 C -0.740 4.740 13 C -0.145 4.145 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.145 4.145 18 N -0.534 5.534 19 Si 0.722 3.278 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C -0.009 4.009 24 C -0.166 4.166 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.145 0.855 40 H 0.145 0.855 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.039 0.961 44 H 0.039 0.961 45 H 0.070 0.930 46 H 0.112 0.888 47 H 0.084 0.916 48 H 0.093 0.907 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.012 27.147 -0.526 27.152 hybrid contribution -0.413 -1.131 -0.062 1.206 sum -0.425 26.016 -0.588 26.026 Atomic orbital electron populations 1.21891 0.95325 1.01903 1.01465 1.21186 0.95890 0.95978 0.98848 1.21845 1.00913 0.96197 1.01541 1.21694 1.00920 0.94480 0.97615 1.21191 1.00453 0.94122 0.94923 1.21906 1.02156 0.94969 0.97451 1.21431 0.97992 0.94195 0.87219 1.57841 1.71318 1.41985 1.12936 1.05433 0.76022 0.74879 0.74185 1.93549 1.77252 1.85976 1.38341 1.93549 1.62382 1.85866 1.53316 1.30598 1.16684 1.15485 1.11258 1.21501 0.99824 0.91351 1.01866 1.19068 0.93349 0.90770 0.97613 1.21297 0.94454 0.90896 1.49708 0.92306 1.25029 0.94879 0.99424 0.95124 1.69964 1.06186 1.27526 1.49764 0.86496 0.79982 0.83666 0.77651 1.19594 1.20941 1.20945 1.21352 1.01399 0.93960 0.84159 1.21892 1.01020 0.94957 0.98746 0.92880 0.93016 0.92295 0.90876 0.92870 0.92793 0.92892 0.91966 0.91973 0.90631 0.90923 0.91392 0.91520 0.88788 0.85520 0.85526 0.91638 0.91637 0.96130 0.96133 0.92954 0.88797 0.91562 0.90659 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 8.97 37.16 0.33 -0.54 16 2 C -0.10 -0.62 2.80 -90.62 -0.25 -0.88 16 3 C -0.15 -0.86 9.19 37.16 0.34 -0.52 16 4 C -0.11 -0.73 4.13 -26.73 -0.11 -0.84 16 5 C -0.09 -0.66 2.03 -90.58 -0.18 -0.85 16 6 C -0.13 -1.07 5.36 -26.61 -0.14 -1.21 16 7 C 0.12 1.15 6.43 -3.71 -0.02 1.12 16 8 N -1.00 -11.58 3.23 -113.77 -0.37 -11.95 16 9 S 2.60 39.33 5.45 -107.50 -0.59 38.75 16 10 O -0.96 -17.03 16.59 -57.54 -0.95 -17.98 16 11 O -0.96 -17.02 16.58 -57.54 -0.95 -17.98 16 12 C -0.61 -9.57 6.18 37.16 0.23 -9.34 16 13 C -0.11 -2.18 5.16 -26.73 -0.14 -2.32 16 14 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 15 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 19 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.12 1.15 6.40 -3.93 -0.03 1.12 16 24 C -0.13 -1.08 5.15 -26.84 -0.14 -1.22 16 25 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 26 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.35 6.47 -51.93 -0.34 0.02 16 28 H 0.07 0.47 6.32 -51.93 -0.33 0.14 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.54 6.34 -51.93 -0.33 0.21 16 35 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 0.99 6.86 -51.93 -0.36 0.64 16 39 H 0.13 1.79 8.14 -51.92 -0.42 1.37 16 40 H 0.13 1.79 8.14 -51.92 -0.42 1.36 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 43 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 46 H 0.09 0.99 6.85 -51.93 -0.36 0.64 16 47 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.07 0.53 6.42 -51.93 -0.33 0.19 16 49 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 389.22 15.07 5.87 5.87 Total: -1.00 -33.85 389.22 -11.13 -44.98 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -9.19 Total: -3.88 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: -0.66 Total: -28.52 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.37 Total: -37.90 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -1.91 Total: -35.96 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 39.33 SS G_CDS: -0.59 Total: 38.75 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.85 -11.13 -44.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760618417.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.962 kcal (2) G-P(sol) polarization free energy of solvation -33.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds