Wall clock time and date at job start Tue Mar 31 2020 13:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46880 * 2 1 4 4 C 1.52996 * 109.47384 * 120.00256 * 2 1 3 5 5 C 1.53001 * 109.47196 * 65.67118 * 4 2 1 6 6 C 1.53041 * 109.45952 * 185.83273 * 5 4 2 7 7 C 1.53187 * 109.31236 * 178.61257 * 6 5 4 8 8 N 1.46927 * 108.77370 * 54.63637 * 7 6 5 9 9 S 1.65605 * 120.63009 * 126.36818 * 8 7 6 10 10 O 1.42100 * 104.27530 * 333.92859 * 9 8 7 11 11 O 1.42107 * 104.27503 * 206.07343 * 9 8 7 12 12 C 1.81396 * 104.45071 * 90.00167 * 9 8 7 13 13 C 1.52996 * 109.47290 * 180.02562 * 12 9 8 14 14 C 1.53005 * 109.47212 * 179.97438 * 13 12 9 15 15 C 1.50700 * 109.46721 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00558 * 0.02562 * 15 14 13 17 17 C 1.37875 * 119.99390 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00695 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99839 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47306 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47360 * 120.00074 * 19 17 15 22 22 H 1.48500 * 109.47140 * 240.00186 * 19 17 15 23 23 C 1.46927 * 118.73790 * 306.64238 * 8 7 6 24 24 C 1.52760 * 109.00899 * 53.30957 * 23 8 7 25 25 H 1.08999 * 109.46820 * 300.00051 * 1 2 3 26 26 H 1.09006 * 109.47345 * 59.99927 * 1 2 3 27 27 H 1.08998 * 109.46757 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47153 * 240.00580 * 2 1 3 29 29 H 1.08996 * 109.46930 * 58.67420 * 3 2 1 30 30 H 1.08999 * 109.46786 * 178.67436 * 3 2 1 31 31 H 1.09001 * 109.46958 * 298.67147 * 3 2 1 32 32 H 1.09007 * 109.47022 * 305.67038 * 4 2 1 33 33 H 1.09000 * 109.47531 * 185.67539 * 4 2 1 34 34 H 1.09002 * 109.45808 * 305.80663 * 5 4 2 35 35 H 1.09010 * 109.49711 * 58.66317 * 6 5 4 36 36 H 1.08998 * 109.49969 * 298.57264 * 6 5 4 37 37 H 1.09004 * 109.58960 * 294.84839 * 7 6 5 38 38 H 1.09002 * 109.70592 * 174.49235 * 7 6 5 39 39 H 1.09001 * 109.47332 * 59.99534 * 12 9 8 40 40 H 1.09005 * 109.46654 * 299.99806 * 12 9 8 41 41 H 1.08996 * 109.47163 * 59.99551 * 13 12 9 42 42 H 1.09005 * 109.46852 * 299.99364 * 13 12 9 43 43 H 1.08997 * 109.46914 * 299.99782 * 14 13 12 44 44 H 1.09001 * 109.46667 * 60.00004 * 14 13 12 45 45 H 0.96995 * 120.00665 * 179.97438 * 18 17 15 46 46 H 1.09001 * 109.58288 * 173.14180 * 23 8 7 47 47 H 1.08999 * 109.58825 * 293.56776 * 23 8 7 48 48 H 1.08997 * 109.56474 * 185.54858 * 24 23 8 49 49 H 1.09007 * 109.35948 * 65.49451 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6498 -2.1991 1.1799 6 6 2.0309 -2.8890 2.4917 7 6 1.6074 -4.3600 2.4321 8 7 2.1968 -4.9735 1.2342 9 16 3.1025 -6.3550 1.3524 10 8 3.6172 -6.3242 2.6766 11 8 3.9696 -6.3028 0.2279 12 6 1.9008 -7.7012 1.1678 13 6 2.6237 -9.0464 1.2607 14 6 1.6100 -10.1819 1.1055 15 6 2.3222 -11.5069 1.1965 16 1 3.3908 -11.5362 1.3500 17 6 1.6093 -12.6817 1.0847 18 7 0.3080 -12.6462 0.8982 19 14 2.4921 -14.3242 1.1967 20 1 3.9441 -14.0926 1.4052 21 1 1.9459 -15.1031 2.3368 22 1 2.2885 -15.0826 -0.0637 23 6 1.9726 -4.3348 -0.0698 24 6 2.3873 -2.8671 0.0172 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.6573 1.9632 0.8778 30 1 3.1297 1.4427 0.0238 31 1 1.6962 1.9495 -0.9017 32 1 1.5962 -0.2694 2.1363 33 1 3.1253 -0.6341 1.3014 34 1 0.5743 -2.2837 1.0241 35 1 1.5234 -2.3977 3.3220 36 1 3.1095 -2.8264 2.6358 37 1 0.5206 -4.4256 2.3791 38 1 1.9620 -4.8809 3.3215 39 1 1.4089 -7.6188 0.1986 40 1 1.1555 -7.6341 1.9604 41 1 3.1152 -9.1285 2.2300 42 1 3.3692 -9.1137 0.4683 43 1 0.8648 -10.1145 1.8981 44 1 1.1182 -10.0999 0.1363 45 1 -0.1935 -13.4727 0.8192 46 1 2.5701 -4.8374 -0.8304 47 1 0.9162 -4.3982 -0.3310 48 1 2.1336 -2.3603 -0.9138 49 1 3.4626 -2.8048 0.1846 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760618417.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:24:08 Heat of formation + Delta-G solvation = -137.343453 kcal Electronic energy + Delta-G solvation = -25239.320477 eV Core-core repulsion = 21711.889049 eV Total energy + Delta-G solvation = -3527.431428 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.02633 -38.27255 -37.20651 -36.98144 -36.47955 -34.17780 -33.37731 -31.99401 -29.67167 -28.05931 -27.92884 -25.61963 -24.41408 -23.83549 -22.37272 -21.40842 -20.42753 -19.74591 -18.71453 -18.57469 -17.30119 -17.22165 -16.49613 -16.16905 -16.11086 -15.48170 -15.42078 -15.19849 -15.00128 -14.68963 -14.51626 -14.11433 -14.07249 -13.69254 -13.54592 -13.52095 -13.20435 -13.03610 -13.01458 -12.93390 -12.78587 -12.71478 -12.61437 -12.60284 -12.19634 -12.15552 -12.08939 -11.89488 -11.78001 -11.54001 -11.38496 -11.21705 -11.13286 -11.04139 -10.91351 -10.59670 -9.87630 -8.24267 -6.35437 -0.77657 1.38725 1.39275 1.52755 1.68433 2.38649 2.80152 3.09016 3.13558 3.59720 3.75256 3.82022 3.84770 3.89965 4.12350 4.23191 4.26368 4.33564 4.36888 4.40936 4.51086 4.60132 4.62139 4.77347 4.81575 4.85882 4.86775 4.90564 4.93498 4.98595 5.02532 5.04277 5.05241 5.15380 5.20593 5.21528 5.27350 5.36471 5.43352 5.45144 5.48677 5.60102 5.61236 5.68234 5.73153 5.77561 6.17921 6.80141 7.33941 8.87400 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.033826 B = 0.002351 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.574468 B =11909.142978 C =12126.376238 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.148 4.148 4 C -0.105 4.105 5 C -0.084 4.084 6 C -0.125 4.125 7 C 0.108 3.892 8 N -0.996 5.996 9 S 2.620 3.380 10 O -0.988 6.988 11 O -0.988 6.988 12 C -0.608 4.608 13 C -0.107 4.107 14 C 0.031 3.969 15 C -0.552 4.552 16 H 0.059 0.941 17 C 0.002 3.998 18 N -0.929 5.929 19 Si 0.964 3.036 20 H -0.264 1.264 21 H -0.276 1.276 22 H -0.276 1.276 23 C 0.107 3.893 24 C -0.126 4.126 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.144 0.856 40 H 0.144 0.856 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.003 0.997 44 H 0.003 0.997 45 H 0.265 0.735 46 H 0.083 0.917 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.384 28.312 -0.690 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.205 4.205 4 C -0.143 4.143 5 C -0.102 4.102 6 C -0.164 4.164 7 C -0.017 4.017 8 N -0.836 5.836 9 S 2.717 3.283 10 O -0.979 6.979 11 O -0.979 6.979 12 C -0.738 4.738 13 C -0.146 4.146 14 C -0.007 4.007 15 C -0.590 4.590 16 H 0.078 0.922 17 C -0.197 4.197 18 N -0.569 5.569 19 Si 0.789 3.211 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.017 4.017 24 C -0.165 4.165 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.102 0.898 39 H 0.162 0.838 40 H 0.162 0.838 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.074 0.926 46 H 0.102 0.898 47 H 0.110 0.890 48 H 0.111 0.889 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.585 28.197 -0.574 28.209 hybrid contribution -0.272 -1.374 -0.053 1.402 sum -0.857 26.823 -0.627 26.844 Atomic orbital electron populations 1.21878 0.94871 1.02047 1.01640 1.21175 0.96215 0.96012 0.98410 1.21841 1.00751 0.96101 1.01797 1.21644 1.00459 0.94017 0.98163 1.21174 1.00947 0.94281 0.93813 1.21928 1.01361 0.94302 0.98844 1.21704 0.99373 0.94665 0.85943 1.57563 1.71093 1.40423 1.14479 1.04496 0.75712 0.75172 0.72885 1.93508 1.78100 1.86577 1.39668 1.93509 1.63695 1.86459 1.54194 1.30556 1.17079 1.13179 1.13025 1.21316 0.98973 0.92429 1.01856 1.18962 0.93880 0.91974 0.95869 1.21763 0.94845 0.92559 1.49872 0.92228 1.25951 0.95685 1.03435 0.94580 1.70071 1.07645 1.28783 1.50423 0.85410 0.78981 0.78773 0.77978 1.18836 1.20139 1.20153 1.21619 1.02861 0.94393 0.82826 1.21907 1.00150 0.94298 1.00151 0.92745 0.92860 0.92126 0.91092 0.92686 0.93080 0.92590 0.91416 0.92802 0.89365 0.88971 0.93057 0.88933 0.89788 0.83825 0.83822 0.91709 0.91710 0.97852 0.97861 0.92588 0.89826 0.88983 0.88916 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 8.97 71.98 0.65 -0.74 16 2 C -0.10 -1.04 2.80 -10.79 -0.03 -1.07 16 3 C -0.15 -1.49 9.19 71.98 0.66 -0.83 16 4 C -0.11 -1.20 4.13 30.59 0.13 -1.08 16 5 C -0.08 -1.06 2.03 -10.77 -0.02 -1.08 16 6 C -0.13 -1.89 5.36 30.67 0.16 -1.72 16 7 C 0.11 1.90 6.43 86.36 0.56 2.46 16 8 N -1.00 -21.58 3.23 -513.84 -1.66 -23.24 16 9 S 2.62 78.28 5.45 -56.49 -0.31 77.97 16 10 O -0.99 -34.99 16.59 -127.65 -2.12 -37.10 16 11 O -0.99 -35.00 16.58 -127.65 -2.12 -37.12 16 12 C -0.61 -18.73 6.18 71.98 0.44 -18.29 16 13 C -0.11 -4.43 5.16 30.59 0.16 -4.27 16 14 C 0.03 1.64 4.97 29.85 0.15 1.79 16 15 C -0.55 -31.77 9.11 25.60 0.23 -31.54 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.00 0.10 5.46 84.65 0.46 0.56 16 18 N -0.93 -55.92 13.29 21.45 0.28 -55.64 16 19 Si 0.96 44.47 29.54 68.60 2.03 46.50 16 20 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 21 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 23 C 0.11 1.91 6.40 86.22 0.55 2.47 16 24 C -0.13 -1.92 5.15 30.53 0.16 -1.76 16 25 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 27 H 0.06 0.55 6.47 -2.39 -0.02 0.54 16 28 H 0.07 0.77 6.32 -2.38 -0.02 0.76 16 29 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.71 8.14 -2.38 -0.02 0.70 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.94 6.34 -2.39 -0.02 0.93 16 35 H 0.09 1.04 8.14 -2.38 -0.02 1.02 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.08 1.68 6.86 -2.39 -0.02 1.66 16 39 H 0.14 3.90 8.14 -2.39 -0.02 3.88 16 40 H 0.14 3.90 8.14 -2.39 -0.02 3.88 16 41 H 0.06 2.65 8.14 -2.39 -0.02 2.63 16 42 H 0.06 2.65 8.14 -2.38 -0.02 2.63 16 43 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 44 H 0.00 0.16 8.14 -2.39 -0.02 0.15 16 45 H 0.27 14.90 8.31 -92.71 -0.77 14.13 16 46 H 0.08 1.68 6.85 -2.39 -0.02 1.67 16 47 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.09 1.09 6.42 -2.39 -0.02 1.08 16 49 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -72.81 389.22 1.25 -71.56 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: 0.88 Total: 12.17 kcal Atomic # 6 Polarization: -59.36 SS G_CDS: 4.26 Total: -55.10 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -1.37 Total: -78.88 kcal Atomic # 8 Polarization: -69.99 SS G_CDS: -4.23 Total: -74.22 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: 78.28 SS G_CDS: -0.31 Total: 77.97 kcal Total: -72.81 1.25 -71.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760618417.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.781 kcal (2) G-P(sol) polarization free energy of solvation -72.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds