Wall clock time and date at job start Tue Mar 31 2020 12:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47383 * 2 1 4 4 C 1.53002 * 109.67835 * 293.76521 * 3 2 1 5 5 C 1.53294 * 109.68330 * 54.28548 * 3 2 1 6 6 O 1.42961 * 109.22121 * 172.03106 * 5 3 2 7 7 C 1.42964 * 114.16385 * 297.41247 * 6 5 3 8 8 C 1.53294 * 109.22138 * 62.58580 * 7 6 5 9 9 N 1.47151 * 108.38536 * 307.69535 * 8 7 6 10 10 C 1.34772 * 120.98688 * 230.55895 * 9 8 7 11 11 O 1.21284 * 120.00490 * 185.37915 * 10 9 8 12 12 C 1.50701 * 119.99795 * 5.36886 * 10 9 8 13 13 C 1.50700 * 109.47332 * 180.02562 * 12 10 9 14 14 C 1.37636 * 120.12901 * 264.73174 * 13 12 10 15 15 C 1.38617 * 120.24695 * 179.72202 * 14 13 12 16 16 C 1.38651 * 120.50180 * 0.55415 * 15 14 13 17 17 C 1.37594 * 120.24773 * 359.72221 * 16 15 14 18 18 C 1.40694 * 120.12693 * 85.00224 * 13 12 10 19 19 C 1.41404 * 120.24539 * 359.97438 * 18 13 12 20 20 H 1.07995 * 119.99438 * 330.56387 * 19 18 13 21 21 C 1.39943 * 120.00166 * 150.56299 * 19 18 13 22 22 N 1.30825 * 120.00027 * 349.97768 * 21 19 18 23 23 Si 1.86795 * 119.99931 * 169.97866 * 21 19 18 24 24 H 1.48501 * 109.47375 * 359.97438 * 23 21 19 25 25 H 1.48507 * 109.47382 * 119.99930 * 23 21 19 26 26 H 1.48500 * 109.47002 * 240.00117 * 23 21 19 27 27 H 1.09006 * 109.46917 * 59.99678 * 1 2 3 28 28 H 1.08991 * 109.47383 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46922 * 300.00501 * 1 2 3 30 30 H 1.09004 * 109.46922 * 239.99499 * 2 1 3 31 31 H 1.09000 * 109.46859 * 119.99626 * 2 1 3 32 32 H 1.08996 * 109.47472 * 180.51938 * 4 3 2 33 33 H 1.09003 * 109.47029 * 300.51843 * 4 3 2 34 34 H 1.09005 * 109.47057 * 60.51735 * 4 3 2 35 35 H 1.08993 * 109.51526 * 52.10335 * 5 3 2 36 36 H 1.08999 * 109.55280 * 291.97456 * 5 3 2 37 37 H 1.09002 * 109.51240 * 182.50821 * 7 6 5 38 38 H 1.09000 * 109.51669 * 302.66026 * 7 6 5 39 39 H 1.08998 * 109.68123 * 67.41841 * 8 7 6 40 40 H 1.08998 * 109.68505 * 187.97319 * 8 7 6 41 41 H 1.08995 * 109.47822 * 300.00818 * 12 10 9 42 42 H 1.09006 * 109.47070 * 60.00335 * 12 10 9 43 43 H 1.08002 * 119.87868 * 359.97152 * 14 13 12 44 44 H 1.07999 * 119.74969 * 180.30144 * 15 14 13 45 45 H 1.08004 * 119.87672 * 179.74820 * 16 15 14 46 46 H 1.08007 * 120.12833 * 180.02562 * 17 16 15 47 47 H 0.96998 * 120.00207 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6645 2.1217 -1.3185 5 6 1.4178 2.2101 1.1719 6 8 2.0375 3.4943 1.2754 7 6 3.4378 3.4472 1.5600 8 6 4.1635 2.7428 0.4079 9 7 3.5025 1.4510 0.1638 10 6 4.2152 0.3094 0.0927 11 8 3.6668 -0.7304 -0.2056 12 6 5.6938 0.3249 0.3836 13 6 6.2496 -1.0680 0.2351 14 6 6.3808 -1.8807 1.3381 15 6 6.8865 -3.1643 1.2035 16 6 7.2761 -3.6404 -0.0391 17 6 7.1591 -2.8435 -1.1546 18 6 6.6417 -1.5405 -1.0307 19 6 6.5164 -0.7127 -2.1703 20 1 5.7393 0.0361 -2.2107 21 6 7.3992 -0.8639 -3.2455 22 7 8.4547 -1.6271 -3.1230 23 14 7.0705 0.0241 -4.8557 24 1 5.8210 0.8178 -4.7373 25 1 8.2062 0.9306 -5.1619 26 1 6.9227 -0.9707 -5.9483 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 2.0373 3.1460 -1.3187 33 1 2.1086 1.5733 -2.1492 34 1 0.5799 2.1299 -1.4270 35 1 1.5756 1.6542 2.0961 36 1 0.3487 2.3346 0.9999 37 1 3.8220 4.4617 1.6662 38 1 3.6029 2.8957 2.4856 39 1 4.1102 3.3581 -0.4902 40 1 5.2062 2.5763 0.6781 41 1 6.1951 0.9924 -0.3171 42 1 5.8600 0.6761 1.4021 43 1 6.0850 -1.5184 2.3116 44 1 6.9814 -3.7969 2.0736 45 1 7.6725 -4.6408 -0.1317 46 1 7.4628 -3.2165 -2.1216 47 1 9.0668 -1.7316 -3.8681 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777106486.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:24:34 Heat of formation + Delta-G solvation = -53.135925 kcal Electronic energy + Delta-G solvation = -28209.509710 eV Core-core repulsion = 24550.285843 eV Total energy + Delta-G solvation = -3659.223867 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.66397 -38.35408 -37.23171 -35.43668 -34.20020 -33.57566 -31.52678 -29.96819 -29.43100 -28.62908 -26.86554 -26.29327 -25.06606 -24.29527 -22.23140 -21.13778 -20.87190 -19.43488 -18.22033 -17.13995 -16.59122 -16.52624 -15.70824 -15.53331 -15.27773 -15.05129 -14.77743 -14.48274 -13.94505 -13.80595 -13.48616 -13.22727 -13.08937 -12.72840 -12.63848 -12.54316 -12.06712 -11.97462 -11.69803 -11.57332 -11.54166 -11.29309 -11.23055 -11.15192 -11.04258 -10.95186 -10.63480 -10.51109 -10.45897 -10.35416 -10.06771 -9.48463 -9.33495 -9.19615 -8.54515 -8.22411 -7.29754 -7.23341 -6.67167 -4.34515 2.77412 2.93347 3.08243 3.13260 3.25867 3.27297 3.28518 3.72839 3.95938 4.65112 4.69742 4.80187 4.88686 5.00383 5.10210 5.20411 5.34351 5.37468 5.47936 5.52630 5.61834 5.63549 5.65284 5.77865 5.81335 5.83004 5.95120 6.00552 6.11057 6.17774 6.23987 6.27477 6.41728 6.48597 6.50996 6.62830 6.80295 6.94062 7.02139 7.12247 7.30609 7.43456 7.64921 7.79968 7.93221 8.09793 8.13466 8.33449 8.67044 8.83559 8.94551 9.02806 10.26618 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012593 B = 0.004960 C = 0.004308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.942669 B = 5643.316257 C = 6498.455288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.107 4.107 3 C 0.141 3.859 4 C -0.152 4.152 5 C 0.058 3.942 6 O -0.380 6.380 7 C 0.047 3.953 8 C 0.074 3.926 9 N -0.622 5.622 10 C 0.521 3.479 11 O -0.509 6.509 12 C -0.071 4.071 13 C -0.176 4.176 14 C -0.085 4.085 15 C -0.234 4.234 16 C -0.110 4.110 17 C -0.152 4.152 18 C 0.128 3.872 19 C -0.456 4.456 20 H 0.073 0.927 21 C 0.075 3.925 22 N -0.803 5.803 23 Si 0.904 3.096 24 H -0.263 1.263 25 H -0.275 1.275 26 H -0.273 1.273 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.086 0.914 46 H 0.119 0.881 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.566 9.674 5.693 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.145 4.145 3 C 0.056 3.944 4 C -0.210 4.210 5 C -0.019 4.019 6 O -0.299 6.299 7 C -0.031 4.031 8 C -0.050 4.050 9 N -0.360 5.360 10 C 0.311 3.689 11 O -0.383 6.383 12 C -0.110 4.110 13 C -0.177 4.177 14 C -0.103 4.103 15 C -0.254 4.254 16 C -0.128 4.128 17 C -0.172 4.172 18 C 0.126 3.874 19 C -0.486 4.486 20 H 0.091 0.909 21 C -0.141 4.141 22 N -0.430 5.430 23 Si 0.729 3.271 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.198 1.198 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.092 0.908 40 H 0.116 0.884 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.137 0.863 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -9.733 9.177 5.364 14.413 hybrid contribution 0.216 0.213 -0.733 0.794 sum -9.518 9.391 4.630 14.150 Atomic orbital electron populations 1.22059 0.97044 1.01745 1.01069 1.21977 0.93475 0.93342 1.05709 1.21243 0.80551 0.97303 0.95303 1.22092 1.01372 1.00851 0.96675 1.23112 0.97519 0.84275 0.97011 1.87923 1.21634 1.28215 1.92093 1.22993 0.81820 1.01566 0.96711 1.22361 0.98124 0.85428 0.99053 1.48399 1.06192 1.07162 1.74216 1.21193 0.89693 0.82263 0.75764 1.90688 1.70827 1.31456 1.45309 1.20321 0.90614 0.98793 1.01306 1.19093 1.10971 0.93941 0.93742 1.20290 0.99719 0.94297 0.95993 1.20323 1.11813 0.96881 0.96334 1.20695 1.00555 0.97940 0.93648 1.21350 1.04363 0.93907 0.97545 1.17351 0.88057 0.91188 0.90850 1.19478 1.13007 1.16745 0.99374 0.90911 1.25850 0.93943 0.94512 0.99843 1.69798 1.09317 1.31837 1.32030 0.86329 0.79330 0.79829 0.81638 1.18633 1.20026 1.19815 0.92727 0.92508 0.93310 0.88476 0.91214 0.92169 0.92056 0.91701 0.92882 0.87988 0.87916 0.92717 0.90831 0.88386 0.88687 0.90871 0.89871 0.89686 0.89580 0.86348 0.91146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 9.20 37.16 0.34 -1.53 16 2 C -0.11 -1.63 3.43 -26.73 -0.09 -1.72 16 3 C 0.14 1.96 0.80 -131.31 -0.11 1.85 16 4 C -0.15 -1.98 8.30 37.16 0.31 -1.67 16 5 C 0.06 0.69 4.85 37.31 0.18 0.87 16 6 O -0.38 -4.61 10.39 -35.23 -0.37 -4.98 16 7 C 0.05 0.48 6.98 37.31 0.26 0.74 16 8 C 0.07 0.89 6.16 -3.53 -0.02 0.87 16 9 N -0.62 -9.56 2.71 -157.52 -0.43 -9.99 16 10 C 0.52 10.02 7.10 -10.99 -0.08 9.95 16 11 O -0.51 -11.53 11.80 5.55 0.07 -11.46 16 12 C -0.07 -1.37 3.56 -29.03 -0.10 -1.48 16 13 C -0.18 -4.18 4.43 -103.92 -0.46 -4.64 16 14 C -0.08 -1.94 9.66 -39.66 -0.38 -2.32 16 15 C -0.23 -5.43 10.05 -39.29 -0.39 -5.82 16 16 C -0.11 -2.68 10.02 -39.66 -0.40 -3.07 16 17 C -0.15 -4.06 8.66 -38.87 -0.34 -4.40 16 18 C 0.13 3.40 5.54 -106.82 -0.59 2.80 16 19 C -0.46 -11.96 8.06 -37.74 -0.30 -12.27 16 20 H 0.07 1.88 6.78 -52.49 -0.36 1.53 16 21 C 0.07 1.88 5.26 -17.34 -0.09 1.79 16 22 N -0.80 -20.84 10.85 55.55 0.60 -20.24 16 23 Si 0.90 19.03 29.57 -169.99 -5.03 14.00 16 24 H -0.26 -5.53 7.11 56.52 0.40 -5.12 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 27 H 0.05 0.58 6.64 -51.93 -0.34 0.23 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.48 6.54 -51.93 -0.34 0.14 16 30 H 0.10 1.79 6.47 -51.93 -0.34 1.45 16 31 H 0.07 1.19 7.12 -51.93 -0.37 0.82 16 32 H 0.06 0.76 7.21 -51.93 -0.37 0.39 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.06 0.72 6.65 -51.93 -0.35 0.37 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.10 1.03 6.86 -51.93 -0.36 0.68 16 37 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.86 7.64 -51.93 -0.40 0.46 16 40 H 0.10 1.09 6.04 -51.93 -0.31 0.77 16 41 H 0.10 1.83 6.78 -51.93 -0.35 1.48 16 42 H 0.07 1.20 7.79 -51.93 -0.40 0.80 16 43 H 0.08 1.68 8.06 -52.49 -0.42 1.26 16 44 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 46 H 0.12 3.27 6.25 -52.48 -0.33 2.94 16 47 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 360.68 15.07 5.44 5.44 Total: -1.00 -30.02 360.68 -9.12 -39.14 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -7.13 Total: 8.14 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -2.27 Total: -20.05 kcal Atomic # 7 Polarization: -30.40 SS G_CDS: 0.18 Total: -30.23 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.30 Total: -16.44 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.02 -9.12 -39.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777106486.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.000 kcal (2) G-P(sol) polarization free energy of solvation -30.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds