Wall clock time and date at job start Tue Mar 31 2020 12:19:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47092 * 2 1 4 4 O 1.42906 * 109.44649 * 65.03699 * 3 2 1 5 5 C 1.53038 * 109.46273 * 184.99897 * 3 2 1 6 6 C 1.53187 * 109.31633 * 181.38848 * 5 3 2 7 7 N 1.46927 * 108.77621 * 305.36914 * 6 5 3 8 8 C 1.34776 * 120.63121 * 233.58282 * 7 6 5 9 9 O 1.21276 * 120.00247 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.99770 * 179.97438 * 8 7 6 11 11 C 1.50703 * 109.46828 * 180.02562 * 10 8 7 12 12 C 1.37643 * 120.12767 * 264.99994 * 11 10 8 13 13 C 1.38612 * 120.24847 * 180.02562 * 12 11 10 14 14 C 1.38650 * 120.49977 * 359.97438 * 13 12 11 15 15 C 1.37597 * 120.25398 * 359.97438 * 14 13 12 16 16 C 1.40694 * 120.12855 * 85.00239 * 11 10 8 17 17 C 1.41396 * 120.24365 * 0.25010 * 16 11 10 18 18 H 1.07998 * 120.00359 * 329.54648 * 17 16 11 19 19 C 1.39949 * 119.99696 * 149.54541 * 17 16 11 20 20 N 1.30825 * 119.99731 * 162.05780 * 19 17 16 21 21 Si 1.86795 * 120.00156 * 342.05481 * 19 17 16 22 22 H 1.48503 * 109.47273 * 95.38807 * 21 19 17 23 23 H 1.48501 * 109.47341 * 215.38567 * 21 19 17 24 24 H 1.48497 * 109.47213 * 335.38946 * 21 19 17 25 25 C 1.46930 * 118.73565 * 53.85763 * 7 6 5 26 26 C 1.53030 * 109.46215 * 305.07286 * 3 2 1 27 27 H 1.09000 * 109.46762 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47096 * 299.99492 * 1 2 3 29 29 H 1.08993 * 109.47333 * 59.99510 * 1 2 3 30 30 H 1.08997 * 109.47096 * 240.00508 * 2 1 3 31 31 H 1.09000 * 109.47662 * 120.00358 * 2 1 3 32 32 H 0.96701 * 113.99977 * 299.96955 * 4 3 2 33 33 H 1.09004 * 109.49493 * 61.43645 * 5 3 2 34 34 H 1.09004 * 109.49851 * 301.34387 * 5 3 2 35 35 H 1.08995 * 109.58882 * 185.57927 * 6 5 3 36 36 H 1.09001 * 109.58705 * 65.15213 * 6 5 3 37 37 H 1.08994 * 109.47149 * 60.00488 * 10 8 7 38 38 H 1.08994 * 109.47199 * 300.00125 * 10 8 7 39 39 H 1.08001 * 119.87152 * 0.02562 * 12 11 10 40 40 H 1.07996 * 119.74916 * 180.02562 * 13 12 11 41 41 H 1.08005 * 119.87604 * 179.97438 * 14 13 12 42 42 H 1.07995 * 120.13135 * 179.97438 * 15 14 13 43 43 H 0.97003 * 119.99985 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.58922 * 65.93426 * 25 7 6 45 45 H 1.09009 * 109.58333 * 186.35330 * 25 7 6 46 46 H 1.08998 * 109.50066 * 298.56367 * 26 3 2 47 47 H 1.09008 * 109.49913 * 58.63046 * 26 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.6624 2.0806 1.2216 5 6 3.5652 1.4441 -0.1257 6 6 4.0750 2.8882 -0.0905 7 7 3.3828 3.6597 -1.1319 8 6 4.0821 4.3610 -2.0460 9 8 5.2945 4.3589 -2.0143 10 6 3.3575 5.1468 -3.1084 11 6 4.3617 5.8342 -3.9973 12 6 4.7271 7.1376 -3.7479 13 6 5.6501 7.7724 -4.5642 14 6 6.2158 7.1041 -5.6393 15 6 5.8662 5.8005 -5.9069 16 6 4.9292 5.1462 -5.0855 17 6 4.5575 3.8088 -5.3546 18 1 4.2657 3.1560 -4.5452 19 6 4.5675 3.3309 -6.6699 20 7 4.5726 2.0427 -6.8978 21 14 4.5736 4.5325 -8.1002 22 1 5.9699 4.7542 -8.5545 23 1 3.7718 3.9747 -9.2187 24 1 3.9840 5.8238 -7.6643 25 6 1.9137 3.6569 -1.1542 26 6 1.4282 2.1996 -1.1809 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 0.7072 2.1159 1.3681 33 1 3.8529 0.9796 -1.0689 34 1 3.9992 0.8847 0.7031 35 1 5.1485 2.9015 -0.2787 36 1 3.8677 3.3252 0.8863 37 1 2.7189 5.8932 -2.6361 38 1 2.7459 4.4713 -3.7063 39 1 4.2931 7.6675 -2.9129 40 1 5.9314 8.7951 -4.3609 41 1 6.9337 7.6086 -6.2691 42 1 6.3077 5.2819 -6.7450 43 1 4.5799 1.7115 -7.8095 44 1 1.5338 4.1553 -0.2623 45 1 1.5608 4.1775 -2.0445 46 1 1.7360 1.7281 -2.1141 47 1 0.3411 2.1776 -1.1034 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000777408369.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:49 Heat of formation + Delta-G solvation = -99.245447 kcal Electronic energy + Delta-G solvation = -27574.416706 eV Core-core repulsion = 23913.193380 eV Total energy + Delta-G solvation = -3661.223326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.44343 -40.08082 -39.10639 -36.48717 -35.48111 -34.00082 -33.72101 -32.33829 -32.09577 -31.18929 -28.75571 -26.90161 -26.06449 -24.45679 -23.32065 -23.02784 -21.79569 -21.09454 -19.90594 -19.23510 -18.13267 -17.57320 -17.46860 -16.79670 -16.56875 -16.15905 -15.86951 -15.71292 -15.48944 -15.36260 -15.08155 -14.73729 -14.48685 -14.45747 -13.90676 -13.74039 -13.61425 -13.48918 -13.18060 -13.01540 -12.85444 -12.71348 -12.67179 -12.55804 -12.49952 -12.24325 -12.09646 -11.98577 -11.84623 -11.53518 -11.37018 -11.21114 -10.97360 -10.79633 -10.63857 -9.54545 -9.39502 -9.27907 -8.85911 -6.44287 0.79984 0.90656 1.27360 1.39639 1.49430 1.78590 2.13676 2.16386 2.64864 3.30155 3.48807 3.65814 3.70823 3.82924 3.99842 4.08247 4.20962 4.27816 4.32585 4.34435 4.44497 4.50079 4.51954 4.54024 4.59011 4.63864 4.69845 4.78582 4.83248 4.93040 4.94264 4.99217 5.01591 5.04654 5.15079 5.16380 5.16855 5.36084 5.38193 5.45979 5.64931 5.69545 5.87176 5.95730 6.05716 6.29945 6.45312 6.51082 6.81350 6.91436 6.93583 7.35494 8.22069 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015729 B = 0.004133 C = 0.003554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.756942 B = 6772.813679 C = 7876.159546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.147 4.147 3 C 0.146 3.854 4 O -0.561 6.561 5 C -0.119 4.119 6 C 0.119 3.881 7 N -0.615 5.615 8 C 0.514 3.486 9 O -0.581 6.581 10 C -0.069 4.069 11 C -0.172 4.172 12 C -0.080 4.080 13 C -0.229 4.229 14 C -0.092 4.092 15 C -0.257 4.257 16 C 0.084 3.916 17 C -0.468 4.468 18 H 0.054 0.946 19 C 0.049 3.951 20 N -0.852 5.852 21 Si 0.963 3.037 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.250 1.250 25 C 0.107 3.893 26 C -0.161 4.161 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.388 0.612 33 H 0.058 0.942 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.091 0.909 43 H 0.291 0.709 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.056 0.944 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.563 -0.257 12.486 17.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.185 4.185 3 C 0.105 3.895 4 O -0.370 6.370 5 C -0.158 4.158 6 C -0.004 4.004 7 N -0.349 5.349 8 C 0.304 3.696 9 O -0.461 6.461 10 C -0.108 4.108 11 C -0.174 4.174 12 C -0.098 4.098 13 C -0.248 4.248 14 C -0.110 4.110 15 C -0.276 4.276 16 C 0.081 3.919 17 C -0.498 4.498 18 H 0.072 0.928 19 C -0.165 4.165 20 N -0.479 5.479 21 Si 0.787 3.213 22 H -0.195 1.195 23 H -0.203 1.203 24 H -0.174 1.174 25 C -0.015 4.015 26 C -0.199 4.199 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.239 0.761 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.076 0.924 36 H 0.099 0.901 37 H 0.135 0.865 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.147 0.853 41 H 0.140 0.860 42 H 0.109 0.891 43 H 0.101 0.899 44 H 0.112 0.888 45 H 0.110 0.890 46 H 0.074 0.926 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -11.314 -0.469 12.433 16.816 hybrid contribution 0.053 -0.455 -0.985 1.086 sum -11.260 -0.924 11.448 16.084 Atomic orbital electron populations 1.21858 0.93825 1.02792 1.02790 1.22148 0.97994 0.95804 1.02553 1.20917 0.92976 0.91538 0.84050 1.86527 1.29780 1.81124 1.39552 1.21881 0.95259 0.96270 1.02342 1.21388 0.96643 0.91485 0.90878 1.48225 1.08059 1.48662 1.29954 1.21228 0.87501 0.79099 0.81773 1.90635 1.16428 1.64704 1.74292 1.20329 0.97230 0.99166 0.94078 1.19578 1.02943 0.94628 1.00203 1.20894 0.96868 0.93991 0.98049 1.20871 1.03918 1.00724 0.99297 1.20978 0.98625 0.93858 0.97531 1.21150 1.04525 0.97537 1.04410 1.17720 0.89904 0.92228 0.92028 1.19286 1.41540 0.95311 0.93677 0.92792 1.26764 0.90477 0.96759 1.02471 1.69744 1.38016 1.15695 1.24469 0.85524 0.78973 0.79916 0.76882 1.19499 1.20312 1.17373 1.22002 0.77699 0.97732 1.04023 1.22755 1.02807 0.95496 0.98834 0.92092 0.90873 0.91859 0.92215 0.90991 0.76142 0.92336 0.89278 0.92445 0.90062 0.86455 0.88823 0.85679 0.85345 0.86033 0.89147 0.89905 0.88850 0.88972 0.92556 0.86920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.21 71.98 0.66 -1.13 16 2 C -0.15 -2.43 5.23 30.59 0.16 -2.27 16 3 C 0.15 2.83 0.73 -10.77 -0.01 2.83 16 4 O -0.56 -9.50 11.69 -148.98 -1.74 -11.24 16 5 C -0.12 -3.08 5.11 30.67 0.16 -2.93 16 6 C 0.12 3.65 6.19 86.36 0.53 4.19 16 7 N -0.61 -19.96 2.97 -818.06 -2.43 -22.39 16 8 C 0.51 21.51 7.32 87.66 0.64 22.15 16 9 O -0.58 -30.35 15.45 -3.02 -0.05 -30.39 16 10 C -0.07 -2.68 3.54 29.10 0.10 -2.57 16 11 C -0.17 -8.02 4.43 -19.40 -0.09 -8.11 16 12 C -0.08 -3.33 9.66 22.22 0.21 -3.12 16 13 C -0.23 -9.33 10.05 22.46 0.23 -9.10 16 14 C -0.09 -4.04 10.02 22.22 0.22 -3.82 16 15 C -0.26 -13.08 7.16 22.73 0.16 -12.92 16 16 C 0.08 4.45 5.10 -21.29 -0.11 4.35 16 17 C -0.47 -26.79 8.55 23.46 0.20 -26.59 16 18 H 0.05 3.34 7.01 -2.91 -0.02 3.32 16 19 C 0.05 2.70 5.41 85.26 0.46 3.16 16 20 N -0.85 -47.82 13.93 21.83 0.30 -47.52 16 21 Si 0.96 44.25 24.52 68.60 1.68 45.93 16 22 H -0.27 -12.09 6.72 99.48 0.67 -11.42 16 23 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.25 -11.60 6.86 99.48 0.68 -10.92 16 25 C 0.11 2.45 6.13 86.51 0.53 2.98 16 26 C -0.16 -3.20 4.65 30.81 0.14 -3.05 16 27 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.07 0.57 6.89 -2.39 -0.02 0.56 16 29 H 0.06 0.72 6.31 -2.39 -0.02 0.71 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.39 3.51 7.53 -74.06 -0.56 2.95 16 33 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 34 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.06 2.12 7.01 -2.39 -0.02 2.10 16 36 H 0.08 2.26 7.81 -2.39 -0.02 2.25 16 37 H 0.12 3.51 7.84 -2.39 -0.02 3.49 16 38 H 0.09 3.75 6.69 -2.39 -0.02 3.73 16 39 H 0.13 4.30 8.06 -2.91 -0.02 4.27 16 40 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 41 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.09 4.64 4.78 -2.91 -0.01 4.62 16 43 H 0.29 14.71 8.30 -92.71 -0.77 13.94 16 44 H 0.09 1.72 7.81 -2.39 -0.02 1.70 16 45 H 0.09 2.02 5.93 -2.38 -0.01 2.01 16 46 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.11 1.48 6.27 -2.38 -0.01 1.46 16 Total: -1.00 -73.36 360.92 2.35 -71.01 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.36 Total: 30.57 kcal Atomic # 6 Polarization: -40.18 SS G_CDS: 4.22 Total: -35.96 kcal Atomic # 7 Polarization: -67.78 SS G_CDS: -2.12 Total: -69.91 kcal Atomic # 8 Polarization: -39.85 SS G_CDS: -1.79 Total: -41.64 kcal Atomic # 14 Polarization: 44.25 SS G_CDS: 1.68 Total: 45.93 kcal Total: -73.36 2.35 -71.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777408369.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.237 kcal (2) G-P(sol) polarization free energy of solvation -73.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds