Wall clock time and date at job start Tue Mar 31 2020 13:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47213 * 2 1 4 4 N 1.46497 * 109.47413 * 119.99905 * 2 1 3 5 5 C 1.34779 * 119.99837 * 300.00177 * 4 2 1 6 6 O 1.21546 * 120.00008 * 0.02562 * 5 4 2 7 7 C 1.47880 * 120.00012 * 179.97438 * 5 4 2 8 8 C 1.39922 * 120.02797 * 0.02605 * 7 5 4 9 9 C 1.38325 * 120.36015 * 180.02562 * 8 7 5 10 10 C 1.37756 * 120.41533 * 359.94933 * 9 8 7 11 11 C 1.40748 * 120.03567 * 0.04953 * 10 9 8 12 12 C 1.41435 * 120.17720 * 179.97438 * 11 10 9 13 13 H 1.08007 * 120.00117 * 24.39778 * 12 11 10 14 14 C 1.39936 * 120.00064 * 204.40271 * 12 11 10 15 15 N 1.30828 * 119.99926 * 17.84223 * 14 12 11 16 16 Si 1.86800 * 120.00013 * 197.84032 * 14 12 11 17 17 H 1.48504 * 109.47165 * 94.69202 * 16 14 12 18 18 H 1.48500 * 109.47127 * 214.69095 * 16 14 12 19 19 H 1.48504 * 109.47390 * 334.69174 * 16 14 12 20 20 C 1.39004 * 120.02670 * 180.02562 * 7 5 4 21 21 C 1.53001 * 109.47582 * 239.99956 * 2 1 3 22 22 C 1.53173 * 109.54700 * 174.82215 * 21 2 1 23 23 C 1.53106 * 109.15708 * 183.24145 * 22 21 2 24 24 O 1.42904 * 109.48793 * 57.47668 * 23 22 21 25 25 C 1.42906 * 114.09632 * 298.88570 * 24 23 22 26 26 C 1.53095 * 109.41303 * 61.15667 * 25 24 23 27 27 H 1.08998 * 109.47304 * 300.00022 * 1 2 3 28 28 H 1.09003 * 109.47303 * 60.00339 * 1 2 3 29 29 H 1.09011 * 109.46771 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47614 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46709 * 300.00024 * 3 2 1 32 32 H 1.08999 * 109.47221 * 59.99291 * 3 2 1 33 33 H 0.97000 * 120.00193 * 120.00243 * 4 2 1 34 34 H 1.08002 * 119.81987 * 359.97172 * 8 7 5 35 35 H 1.08009 * 119.79549 * 179.97438 * 9 8 7 36 36 H 1.07997 * 119.98145 * 180.02562 * 10 9 8 37 37 H 0.96997 * 119.99711 * 180.02562 * 15 14 12 38 38 H 1.07999 * 120.19694 * 359.74686 * 20 7 5 39 39 H 1.09005 * 109.54030 * 294.99957 * 21 2 1 40 40 H 1.08999 * 109.52512 * 303.05655 * 22 21 2 41 41 H 1.09004 * 109.52287 * 63.24608 * 22 21 2 42 42 H 1.09004 * 109.40851 * 297.48937 * 23 22 21 43 43 H 1.09003 * 109.48948 * 177.50862 * 23 22 21 44 44 H 1.09003 * 109.48120 * 301.17854 * 25 24 23 45 45 H 1.08994 * 109.49159 * 181.14757 * 25 24 23 46 46 H 1.08998 * 109.52137 * 182.48302 * 26 25 24 47 47 H 1.09006 * 109.52079 * 62.29760 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 1.6927 -0.2301 2.4203 6 8 0.9935 0.7579 2.5318 7 6 2.1853 -0.9275 3.6277 8 6 2.9898 -2.0651 3.5000 9 6 3.4538 -2.7231 4.6248 10 6 3.1304 -2.2658 5.8834 11 6 2.3223 -1.1230 6.0316 12 6 1.9880 -0.6512 7.3224 13 1 2.6245 -0.8829 8.1637 14 6 0.8325 0.1155 7.5096 15 7 -0.1101 0.1104 6.6023 16 14 0.6358 1.1465 9.0548 17 1 1.0929 2.5336 8.7860 18 1 -0.7932 1.1657 9.4585 19 1 1.4513 0.5598 10.1485 20 6 1.8493 -0.4533 4.8905 21 6 2.0401 -0.7212 -1.2492 22 6 3.5662 -0.6104 -1.3177 23 6 4.0600 -1.2641 -2.6111 24 8 3.4344 -0.6358 -3.7318 25 6 2.0100 -0.7503 -3.7449 26 6 1.4337 -0.0740 -2.4981 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 0.0005 30 1 3.1299 1.4426 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8899 33 1 2.5761 -1.4792 1.1072 34 1 3.2492 -2.4320 2.5179 35 1 4.0739 -3.6006 4.5157 36 1 3.4969 -2.7847 6.7568 37 1 -0.9108 0.6422 6.7318 38 1 1.2320 0.4268 4.9937 39 1 1.7523 -1.7718 -1.2067 40 1 3.8559 0.4404 -1.3086 41 1 4.0072 -1.1182 -0.4599 42 1 3.8069 -2.3243 -2.6007 43 1 5.1413 -1.1493 -2.6869 44 1 1.7300 -1.8037 -3.7492 45 1 1.6143 -0.2653 -4.6372 46 1 0.3509 -0.1986 -2.4838 47 1 1.6789 0.9880 -2.5135 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000786338052.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:32 Heat of formation + Delta-G solvation = -78.272099 kcal Electronic energy + Delta-G solvation = -27151.228715 eV Core-core repulsion = 23490.914862 eV Total energy + Delta-G solvation = -3660.313853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.46678 -39.00479 -37.32983 -36.17238 -33.79012 -32.80757 -31.52242 -30.90939 -29.56518 -29.26596 -27.22569 -25.46529 -25.24883 -23.74006 -22.84015 -21.17950 -20.87932 -19.43951 -18.89177 -17.84808 -16.69189 -16.25899 -15.92898 -15.44690 -15.20639 -15.00404 -14.74885 -14.40183 -14.26495 -14.00678 -13.80147 -13.42389 -13.11434 -12.83905 -12.77979 -12.56047 -12.50764 -11.96159 -11.81998 -11.67877 -11.56452 -11.45164 -11.17417 -11.08645 -11.03761 -10.77259 -10.72996 -10.67643 -10.50448 -10.30387 -9.95487 -9.71719 -9.67251 -9.22864 -8.80833 -8.61331 -7.63455 -7.53111 -6.81306 -4.42515 2.21535 2.80441 3.06951 3.10410 3.14569 3.60496 3.69782 3.87622 3.91333 4.45011 4.54247 4.62983 4.64033 4.80655 5.00410 5.13013 5.17946 5.21140 5.35292 5.43424 5.45788 5.56230 5.60380 5.67070 5.72566 5.80587 5.85717 5.86244 6.00374 6.02875 6.08545 6.12483 6.16299 6.26676 6.54380 6.60399 6.71195 6.96917 6.97836 6.99759 7.04257 7.20610 7.37650 7.69548 7.76710 7.92090 8.12029 8.20132 8.50151 8.79455 8.82697 9.00247 10.13262 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.023389 B = 0.003090 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.858334 B = 9060.177496 C = 9862.453057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.184 3.816 3 C -0.166 4.166 4 N -0.730 5.730 5 C 0.567 3.433 6 O -0.541 6.541 7 C -0.129 4.129 8 C -0.219 4.219 9 C -0.098 4.098 10 C -0.213 4.213 11 C 0.098 3.902 12 C -0.460 4.460 13 H 0.081 0.919 14 C 0.073 3.927 15 N -0.782 5.782 16 Si 0.910 3.090 17 H -0.267 1.267 18 H -0.277 1.277 19 H -0.261 1.261 20 C -0.092 4.092 21 C -0.090 4.090 22 C -0.156 4.156 23 C 0.061 3.939 24 O -0.385 6.385 25 C 0.061 3.939 26 C -0.151 4.151 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.080 0.920 33 H 0.396 0.604 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.284 0.716 38 H 0.134 0.866 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.093 0.907 44 H 0.049 0.951 45 H 0.092 0.908 46 H 0.079 0.921 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.111 -1.584 -16.215 16.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.098 3.902 3 C -0.224 4.224 4 N -0.383 5.383 5 C 0.358 3.642 6 O -0.420 6.420 7 C -0.132 4.132 8 C -0.239 4.239 9 C -0.116 4.116 10 C -0.233 4.233 11 C 0.096 3.904 12 C -0.489 4.489 13 H 0.099 0.901 14 C -0.146 4.146 15 N -0.407 5.407 16 Si 0.734 3.266 17 H -0.192 1.192 18 H -0.202 1.202 19 H -0.185 1.185 20 C -0.112 4.112 21 C -0.109 4.109 22 C -0.193 4.193 23 C -0.015 4.015 24 O -0.304 6.304 25 C -0.016 4.016 26 C -0.188 4.188 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.231 0.769 34 H 0.106 0.894 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.095 0.905 38 H 0.151 0.849 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.067 0.933 43 H 0.111 0.889 44 H 0.067 0.933 45 H 0.110 0.890 46 H 0.097 0.903 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.452 -0.684 -16.326 16.523 hybrid contribution -0.085 -0.261 0.876 0.918 sum 2.367 -0.944 -15.449 15.658 Atomic orbital electron populations 1.22285 0.94591 1.02049 1.03423 1.20123 0.94023 0.92363 0.83706 1.22328 1.01004 0.95808 1.03232 1.46098 1.54906 1.32287 1.05044 1.18755 0.78902 0.83403 0.83107 1.90626 1.37982 1.26522 1.86821 1.19520 1.02848 0.98155 0.92663 1.20324 1.07056 1.00105 0.96411 1.20428 0.99658 0.98435 0.93090 1.21092 1.07792 0.98983 0.95412 1.17608 0.89966 0.89575 0.93269 1.19606 1.06595 1.28136 0.94546 0.90091 1.25961 0.94910 0.95426 0.98281 1.69795 1.05386 1.31551 1.33938 0.86266 0.78267 0.80570 0.81466 1.19206 1.20200 1.18536 1.21631 0.99973 1.00120 0.89468 1.21412 0.95268 1.00012 0.94163 1.22362 0.95583 1.03082 0.98318 1.22591 0.97742 0.95673 0.85537 1.87922 1.19400 1.77909 1.45129 1.22585 0.81156 0.99659 0.98155 1.22336 1.01003 1.01403 0.94106 0.89901 0.92189 0.92964 0.92540 0.92315 0.90096 0.76880 0.89419 0.88997 0.88675 0.90479 0.84855 0.90664 0.90144 0.90598 0.93304 0.88901 0.93311 0.88952 0.90253 0.90355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 7.92 37.16 0.29 -2.04 16 2 C 0.18 2.48 0.53 -131.82 -0.07 2.41 16 3 C -0.17 -2.32 7.67 37.16 0.29 -2.04 16 4 N -0.73 -11.64 4.82 -48.53 -0.23 -11.87 16 5 C 0.57 11.94 7.19 -12.31 -0.09 11.85 16 6 O -0.54 -12.79 12.54 5.33 0.07 -12.72 16 7 C -0.13 -2.99 5.87 -105.04 -0.62 -3.60 16 8 C -0.22 -4.54 9.55 -38.92 -0.37 -4.91 16 9 C -0.10 -2.07 10.01 -39.73 -0.40 -2.47 16 10 C -0.21 -5.03 9.78 -38.81 -0.38 -5.41 16 11 C 0.10 2.59 5.57 -106.87 -0.60 1.99 16 12 C -0.46 -12.04 9.05 -37.73 -0.34 -12.38 16 13 H 0.08 2.02 7.91 -52.48 -0.41 1.60 16 14 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 15 N -0.78 -20.59 10.95 55.55 0.61 -19.99 16 16 Si 0.91 18.74 29.59 -169.99 -5.03 13.70 16 17 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 19 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 20 C -0.09 -2.42 8.23 -38.44 -0.32 -2.74 16 21 C -0.09 -0.93 1.67 -90.44 -0.15 -1.08 16 22 C -0.16 -1.54 4.86 -26.59 -0.13 -1.67 16 23 C 0.06 0.55 6.84 37.21 0.25 0.81 16 24 O -0.38 -4.06 10.77 -35.23 -0.38 -4.44 16 25 C 0.06 0.52 6.84 37.21 0.25 0.78 16 26 C -0.15 -1.36 4.64 -26.59 -0.12 -1.49 16 27 H 0.08 1.47 6.16 -51.93 -0.32 1.15 16 28 H 0.06 0.69 6.43 -51.93 -0.33 0.36 16 29 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 30 H 0.06 0.76 6.28 -51.93 -0.33 0.43 16 31 H 0.06 0.70 6.50 -51.93 -0.34 0.36 16 32 H 0.08 1.41 6.17 -51.93 -0.32 1.09 16 33 H 0.40 5.59 5.71 -40.82 -0.23 5.35 16 34 H 0.09 1.50 6.38 -52.49 -0.33 1.16 16 35 H 0.09 1.65 8.06 -52.48 -0.42 1.23 16 36 H 0.10 2.10 8.06 -52.49 -0.42 1.67 16 37 H 0.28 6.87 8.30 -40.82 -0.34 6.54 16 38 H 0.13 3.81 5.74 -52.49 -0.30 3.51 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.08 0.86 6.18 -51.93 -0.32 0.54 16 41 H 0.08 0.75 7.29 -51.93 -0.38 0.37 16 42 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 46 H 0.08 0.66 6.56 -51.93 -0.34 0.32 16 47 H 0.08 0.75 6.43 -51.93 -0.33 0.41 16 LS Contribution 358.37 15.07 5.40 5.40 Total: -1.00 -29.10 358.37 -8.96 -38.06 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: -6.81 Total: 12.09 kcal Atomic # 6 Polarization: -17.65 SS G_CDS: -2.58 Total: -20.23 kcal Atomic # 7 Polarization: -32.23 SS G_CDS: 0.37 Total: -31.86 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.31 Total: -17.17 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.10 -8.96 -38.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786338052.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.210 kcal (2) G-P(sol) polarization free energy of solvation -29.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds