Wall clock time and date at job start Tue Mar 31 2020 13:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46742 * 2 1 4 4 C 1.53001 * 109.46502 * 119.99692 * 2 1 3 5 5 O 1.42898 * 113.28422 * 291.46141 * 4 2 1 6 6 C 1.53492 * 114.20788 * 64.53506 * 4 2 1 7 7 N 1.47066 * 87.98676 * 139.65182 * 6 4 2 8 8 C 1.34774 * 136.05865 * 152.84588 * 7 6 4 9 9 O 1.21282 * 120.00196 * 359.97438 * 8 7 6 10 10 C 1.50708 * 120.00133 * 179.97438 * 8 7 6 11 11 C 1.52993 * 109.47256 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.47485 * 55.00263 * 11 10 8 13 13 C 1.50698 * 109.47437 * 295.00252 * 11 10 8 14 14 H 1.07999 * 120.00494 * 120.72145 * 13 11 10 15 15 C 1.37878 * 119.99778 * 300.72257 * 13 11 10 16 16 N 1.31513 * 119.99990 * 4.39804 * 15 13 11 17 17 Si 1.86800 * 120.00016 * 184.39458 * 15 13 11 18 18 H 1.48500 * 109.47020 * 90.00455 * 17 15 13 19 19 H 1.48501 * 109.47388 * 209.99903 * 17 15 13 20 20 H 1.48496 * 109.47263 * 330.00512 * 17 15 13 21 21 C 1.50701 * 109.47142 * 175.00083 * 11 10 8 22 22 C 1.38230 * 119.99939 * 29.48950 * 21 11 10 23 23 C 1.38237 * 119.99820 * 179.97438 * 22 21 11 24 24 C 1.38232 * 119.99944 * 359.97438 * 23 22 21 25 25 C 1.38229 * 120.00319 * 0.07708 * 24 23 22 26 26 C 1.38233 * 119.99840 * 209.46736 * 21 11 10 27 27 C 1.47067 * 87.88631 * 333.09977 * 7 6 4 28 28 H 1.09000 * 109.47089 * 60.00355 * 1 2 3 29 29 H 1.08999 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47517 * 300.00267 * 1 2 3 31 31 H 1.08994 * 109.47012 * 239.99383 * 2 1 3 32 32 H 1.09007 * 109.46546 * 174.99141 * 3 2 1 33 33 H 1.09000 * 109.47185 * 294.98378 * 3 2 1 34 34 H 1.08995 * 109.47596 * 54.99375 * 3 2 1 35 35 H 0.96699 * 114.00254 * 183.40063 * 5 4 2 36 36 H 1.09001 * 113.46898 * 24.87314 * 6 4 2 37 37 H 1.08999 * 113.52327 * 254.43584 * 6 4 2 38 38 H 1.08998 * 109.46904 * 59.99972 * 10 8 7 39 39 H 1.09005 * 109.46654 * 300.00164 * 10 8 7 40 40 H 0.97003 * 120.00417 * 179.97438 * 16 15 13 41 41 H 1.08000 * 119.99854 * 359.97245 * 22 21 11 42 42 H 1.08008 * 119.99762 * 179.72441 * 23 22 21 43 43 H 1.08008 * 119.99468 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00000 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.00504 * 359.97438 * 26 21 11 46 46 H 1.09001 * 113.47287 * 141.67907 * 27 7 6 47 47 H 1.09002 * 113.47025 * 272.12117 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.7753 -0.0095 2.4599 6 6 1.6821 -2.2128 1.3051 7 7 3.0308 -2.4633 1.8353 8 6 3.6065 -3.3927 2.6235 9 8 2.9430 -4.3043 3.0702 10 6 5.0749 -3.2992 2.9497 11 6 5.4717 -4.4674 3.8545 12 1 5.1913 -5.4071 3.3786 13 6 4.7607 -4.3424 5.1772 14 1 4.1036 -5.1307 5.5138 15 6 4.9489 -3.2217 5.9579 16 7 5.6797 -2.2239 5.5106 17 14 4.1659 -3.1203 7.6508 18 1 5.0999 -3.6771 8.6623 19 1 3.8723 -1.7015 7.9764 20 1 2.9033 -3.9018 7.6598 21 6 6.9615 -4.4439 4.0808 22 6 7.6448 -3.2425 4.0606 23 6 9.0112 -3.2210 4.2687 24 6 9.6942 -4.4009 4.4975 25 6 9.0110 -5.6024 4.5166 26 6 7.6445 -5.6239 4.3090 27 6 3.4735 -1.2499 1.1321 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.1263 1.4438 0.0897 33 1 1.7518 1.9298 -0.9315 34 1 1.6053 1.9816 0.8417 35 1 2.1387 -0.4304 3.2511 36 1 1.5125 -2.6555 0.3236 37 1 0.8872 -2.4433 2.0144 38 1 5.2738 -2.3585 3.4633 39 1 5.6552 -3.3396 2.0278 40 1 5.8118 -1.4352 6.0596 41 1 7.1111 -2.3207 3.8822 42 1 9.5458 -2.2827 4.2486 43 1 10.7619 -4.3840 4.6597 44 1 9.5447 -6.5242 4.6950 45 1 7.1105 -6.5625 4.3255 46 1 4.1987 -0.6621 1.6949 47 1 3.7858 -1.4334 0.1040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793970343.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:54 Heat of formation + Delta-G solvation = -24.179471 kcal Electronic energy + Delta-G solvation = -27446.886767 eV Core-core repulsion = 23788.918547 eV Total energy + Delta-G solvation = -3657.968221 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.64423 -38.53658 -37.57493 -34.90483 -34.31496 -34.18113 -31.11350 -29.88252 -29.19200 -27.81269 -27.51598 -25.90805 -25.26040 -23.05303 -22.16206 -21.36138 -19.94235 -19.71611 -18.38115 -16.91960 -16.38313 -16.11955 -15.60534 -15.34953 -15.18017 -14.84222 -14.48139 -13.97276 -13.92059 -13.80465 -13.46681 -13.27223 -12.90966 -12.75472 -12.49823 -12.24978 -12.21623 -12.12376 -11.77966 -11.55038 -11.37942 -11.36304 -11.09653 -10.98597 -10.93466 -10.80670 -10.70733 -10.44493 -10.21013 -9.96175 -9.66107 -9.33558 -9.22082 -8.78406 -8.49367 -8.22656 -7.82210 -7.46735 -6.01429 -4.10585 2.46809 2.55704 3.28750 3.31059 3.35896 3.42176 3.58821 4.11136 4.23761 4.41356 4.67956 4.77863 4.94910 5.11922 5.17401 5.22052 5.38487 5.43306 5.52547 5.59318 5.65644 5.77406 5.79252 5.80127 5.85936 5.87217 5.88914 5.98983 6.10457 6.19488 6.32333 6.33026 6.35162 6.47982 6.56523 6.71147 6.75282 7.11364 7.14171 7.24805 7.44505 7.51438 7.65049 7.67277 7.92218 8.06214 8.15584 8.30500 8.33319 8.87125 9.09795 9.53235 10.93102 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.004085 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.490245 B = 6853.533559 C = 7585.045257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 C -0.142 4.142 4 C 0.108 3.892 5 O -0.532 6.532 6 C 0.070 3.930 7 N -0.659 5.659 8 C 0.554 3.446 9 O -0.522 6.522 10 C -0.130 4.130 11 C 0.087 3.913 12 H 0.036 0.964 13 C -0.472 4.472 14 H 0.060 0.940 15 C 0.061 3.939 16 N -0.890 5.890 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.275 1.275 21 C -0.029 4.029 22 C -0.070 4.070 23 C -0.144 4.144 24 C -0.153 4.153 25 C -0.142 4.142 26 C -0.131 4.131 27 C 0.071 3.929 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.388 0.612 36 H 0.081 0.919 37 H 0.076 0.924 38 H 0.134 0.866 39 H 0.050 0.950 40 H 0.261 0.739 41 H 0.142 0.858 42 H 0.101 0.899 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.106 0.894 46 H 0.084 0.916 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.528 6.275 -11.569 13.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.086 4.086 3 C -0.199 4.199 4 C 0.065 3.935 5 O -0.339 6.339 6 C -0.054 4.054 7 N -0.399 5.399 8 C 0.347 3.653 9 O -0.395 6.395 10 C -0.169 4.169 11 C 0.068 3.932 12 H 0.055 0.945 13 C -0.509 4.509 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.530 5.530 17 Si 0.719 3.281 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.200 1.200 21 C -0.030 4.030 22 C -0.089 4.089 23 C -0.162 4.162 24 C -0.171 4.171 25 C -0.161 4.161 26 C -0.149 4.149 27 C -0.053 4.053 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.237 0.763 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.152 0.848 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.160 0.840 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.124 0.876 46 H 0.102 0.898 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -3.029 6.136 -11.461 13.349 hybrid contribution 0.088 -0.368 1.571 1.615 sum -2.941 5.768 -9.891 11.821 Atomic orbital electron populations 1.21798 0.94463 1.01958 1.02096 1.20929 0.96566 0.96851 0.94229 1.21723 1.01232 0.95239 1.01734 1.22392 0.94146 0.90103 0.86869 1.86368 1.79863 1.51625 1.16003 1.23644 0.88061 0.94278 0.99392 1.49896 1.11463 1.28274 1.50279 1.20929 0.90744 0.78561 0.75060 1.90636 1.65194 1.32778 1.50923 1.21932 0.88378 1.07736 0.98898 1.17651 0.87761 0.92934 0.94855 0.94544 1.21007 1.23962 1.03752 1.02198 0.92162 1.24877 0.95145 0.95687 0.98171 1.69606 1.39790 1.06698 1.36878 0.86586 0.79743 0.77091 0.84688 1.20760 1.21299 1.19982 1.20299 0.96408 0.92087 0.94208 1.21448 0.92099 0.99107 0.96212 1.21064 0.95465 0.96738 1.02971 1.20778 0.98404 0.93327 1.04596 1.20801 0.94736 0.96916 1.03606 1.20913 0.93692 0.98079 1.02216 1.23671 0.98128 0.85608 0.97908 0.92683 0.92646 0.91868 0.89777 0.92542 0.92939 0.91781 0.76296 0.90057 0.90513 0.84846 0.93164 0.92855 0.84003 0.88049 0.88258 0.88043 0.87616 0.89786 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 9.00 37.16 0.33 -0.98 16 2 C -0.07 -0.63 2.56 -90.62 -0.23 -0.86 16 3 C -0.14 -1.29 8.91 37.16 0.33 -0.95 16 4 C 0.11 1.29 1.04 -90.24 -0.09 1.20 16 5 O -0.53 -7.27 12.83 -35.23 -0.45 -7.73 16 6 C 0.07 0.97 7.30 -8.51 -0.06 0.91 16 7 N -0.66 -11.15 3.53 -185.35 -0.65 -11.80 16 8 C 0.55 11.99 7.83 -10.98 -0.09 11.91 16 9 O -0.52 -13.31 15.76 5.56 0.09 -13.22 16 10 C -0.13 -2.80 3.99 -27.88 -0.11 -2.91 16 11 C 0.09 2.10 1.97 -92.93 -0.18 1.92 16 12 H 0.04 0.90 7.90 -51.93 -0.41 0.49 16 13 C -0.47 -12.64 7.27 -34.44 -0.25 -12.89 16 14 H 0.06 1.72 7.82 -52.49 -0.41 1.31 16 15 C 0.06 1.59 5.14 -17.82 -0.09 1.49 16 16 N -0.89 -22.32 7.86 55.43 0.44 -21.89 16 17 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 21 C -0.03 -0.67 4.65 -104.63 -0.49 -1.16 16 22 C -0.07 -1.53 7.45 -39.58 -0.29 -1.83 16 23 C -0.14 -2.85 10.05 -39.58 -0.40 -3.25 16 24 C -0.15 -2.87 10.05 -39.59 -0.40 -3.27 16 25 C -0.14 -2.74 10.05 -39.58 -0.40 -3.14 16 26 C -0.13 -2.80 9.70 -39.58 -0.38 -3.18 16 27 C 0.07 0.92 7.75 -8.63 -0.07 0.85 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.49 7.62 -51.93 -0.40 0.09 16 30 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.08 0.67 7.99 -51.93 -0.41 0.25 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.66 7.85 -51.93 -0.41 0.25 16 35 H 0.39 5.48 8.83 45.56 0.40 5.88 16 36 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.13 3.03 4.73 -51.93 -0.25 2.78 16 39 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.26 6.42 8.31 -40.82 -0.34 6.08 16 41 H 0.14 3.18 5.10 -52.49 -0.27 2.91 16 42 H 0.10 1.77 8.06 -52.48 -0.42 1.34 16 43 H 0.10 1.58 8.06 -52.48 -0.42 1.16 16 44 H 0.10 1.67 8.06 -52.49 -0.42 1.24 16 45 H 0.11 2.15 8.06 -52.49 -0.42 1.72 16 46 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.08 0.90 8.00 -51.93 -0.42 0.49 16 LS Contribution 376.98 15.07 5.68 5.68 Total: -1.00 -29.51 376.98 -9.56 -39.07 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: -6.77 Total: 9.70 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -2.87 Total: -16.14 kcal Atomic # 7 Polarization: -33.47 SS G_CDS: -0.22 Total: -33.69 kcal Atomic # 8 Polarization: -20.58 SS G_CDS: -0.36 Total: -20.94 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.51 -9.56 -39.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793970343.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.893 kcal (2) G-P(sol) polarization free energy of solvation -29.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds