Wall clock time and date at job start Tue Mar 31 2020 13:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.46742 * 2 1 4 4 C 1.53001 * 109.46502 * 119.99692 * 2 1 3 5 5 O 1.42898 * 113.28422 * 291.46141 * 4 2 1 6 6 C 1.53492 * 114.20788 * 64.53506 * 4 2 1 7 7 N 1.47066 * 87.98676 * 139.65182 * 6 4 2 8 8 C 1.34774 * 136.05865 * 152.84588 * 7 6 4 9 9 O 1.21282 * 120.00196 * 359.97438 * 8 7 6 10 10 C 1.50708 * 120.00133 * 179.97438 * 8 7 6 11 11 C 1.52993 * 109.47256 * 179.97438 * 10 8 7 12 12 H 1.09006 * 109.47485 * 55.00263 * 11 10 8 13 13 C 1.50698 * 109.47437 * 295.00252 * 11 10 8 14 14 H 1.07999 * 120.00494 * 120.72145 * 13 11 10 15 15 C 1.37878 * 119.99778 * 300.72257 * 13 11 10 16 16 N 1.31513 * 119.99990 * 4.39804 * 15 13 11 17 17 Si 1.86800 * 120.00016 * 184.39458 * 15 13 11 18 18 H 1.48500 * 109.47020 * 90.00455 * 17 15 13 19 19 H 1.48501 * 109.47388 * 209.99903 * 17 15 13 20 20 H 1.48496 * 109.47263 * 330.00512 * 17 15 13 21 21 C 1.50701 * 109.47142 * 175.00083 * 11 10 8 22 22 C 1.38230 * 119.99939 * 29.48950 * 21 11 10 23 23 C 1.38237 * 119.99820 * 179.97438 * 22 21 11 24 24 C 1.38232 * 119.99944 * 359.97438 * 23 22 21 25 25 C 1.38229 * 120.00319 * 0.07708 * 24 23 22 26 26 C 1.38233 * 119.99840 * 209.46736 * 21 11 10 27 27 C 1.47067 * 87.88631 * 333.09977 * 7 6 4 28 28 H 1.09000 * 109.47089 * 60.00355 * 1 2 3 29 29 H 1.08999 * 109.47161 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47517 * 300.00267 * 1 2 3 31 31 H 1.08994 * 109.47012 * 239.99383 * 2 1 3 32 32 H 1.09007 * 109.46546 * 174.99141 * 3 2 1 33 33 H 1.09000 * 109.47185 * 294.98378 * 3 2 1 34 34 H 1.08995 * 109.47596 * 54.99375 * 3 2 1 35 35 H 0.96699 * 114.00254 * 183.40063 * 5 4 2 36 36 H 1.09001 * 113.46898 * 24.87314 * 6 4 2 37 37 H 1.08999 * 113.52327 * 254.43584 * 6 4 2 38 38 H 1.08998 * 109.46904 * 59.99972 * 10 8 7 39 39 H 1.09005 * 109.46654 * 300.00164 * 10 8 7 40 40 H 0.97003 * 120.00417 * 179.97438 * 16 15 13 41 41 H 1.08000 * 119.99854 * 359.97245 * 22 21 11 42 42 H 1.08008 * 119.99762 * 179.72441 * 23 22 21 43 43 H 1.08008 * 119.99468 * 179.97438 * 24 23 22 44 44 H 1.08001 * 120.00000 * 179.97438 * 25 24 23 45 45 H 1.08002 * 120.00504 * 359.97438 * 26 21 11 46 46 H 1.09001 * 113.47287 * 141.67907 * 27 7 6 47 47 H 1.09002 * 113.47025 * 272.12117 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 1.7753 -0.0095 2.4599 6 6 1.6821 -2.2128 1.3051 7 7 3.0308 -2.4633 1.8353 8 6 3.6065 -3.3927 2.6235 9 8 2.9430 -4.3043 3.0702 10 6 5.0749 -3.2992 2.9497 11 6 5.4717 -4.4674 3.8545 12 1 5.1913 -5.4071 3.3786 13 6 4.7607 -4.3424 5.1772 14 1 4.1036 -5.1307 5.5138 15 6 4.9489 -3.2217 5.9579 16 7 5.6797 -2.2239 5.5106 17 14 4.1659 -3.1203 7.6508 18 1 5.0999 -3.6771 8.6623 19 1 3.8723 -1.7015 7.9764 20 1 2.9033 -3.9018 7.6598 21 6 6.9615 -4.4439 4.0808 22 6 7.6448 -3.2425 4.0606 23 6 9.0112 -3.2210 4.2687 24 6 9.6942 -4.4009 4.4975 25 6 9.0110 -5.6024 4.5166 26 6 7.6445 -5.6239 4.3090 27 6 3.4735 -1.2499 1.1321 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8899 32 1 3.1263 1.4438 0.0897 33 1 1.7518 1.9298 -0.9315 34 1 1.6053 1.9816 0.8417 35 1 2.1387 -0.4304 3.2511 36 1 1.5125 -2.6555 0.3236 37 1 0.8872 -2.4433 2.0144 38 1 5.2738 -2.3585 3.4633 39 1 5.6552 -3.3396 2.0278 40 1 5.8118 -1.4352 6.0596 41 1 7.1111 -2.3207 3.8822 42 1 9.5458 -2.2827 4.2486 43 1 10.7619 -4.3840 4.6597 44 1 9.5447 -6.5242 4.6950 45 1 7.1105 -6.5625 4.3255 46 1 4.1987 -0.6621 1.6949 47 1 3.7858 -1.4334 0.1040 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793970343.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:02:53 Heat of formation + Delta-G solvation = -41.469374 kcal Electronic energy + Delta-G solvation = -27447.636514 eV Core-core repulsion = 23788.918547 eV Total energy + Delta-G solvation = -3658.717967 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.85210 -40.15533 -39.15794 -36.19050 -35.90864 -35.20576 -33.00260 -31.46980 -30.71912 -29.32886 -28.32437 -27.47769 -26.51377 -24.53428 -23.52931 -22.89925 -21.41064 -20.81476 -19.87362 -18.39361 -18.02803 -17.64108 -16.97170 -16.88605 -16.57924 -16.44725 -15.64872 -15.49340 -15.24492 -15.18681 -14.82930 -14.67392 -14.11499 -14.06611 -13.81071 -13.61879 -13.48852 -13.33950 -13.17306 -13.11745 -12.83809 -12.82914 -12.72231 -12.58022 -12.23886 -11.94905 -11.88734 -11.78578 -11.71425 -11.63459 -11.11249 -11.06886 -10.74060 -10.57267 -10.34402 -9.63110 -9.41998 -9.14110 -7.98112 -6.13373 0.86048 0.97556 1.34272 1.37372 1.46086 1.91380 1.98673 2.42978 3.10741 3.17239 3.21097 3.34395 3.62090 3.83932 4.05744 4.30842 4.31715 4.39242 4.41485 4.46125 4.49137 4.53322 4.62127 4.64896 4.69858 4.74968 4.84765 4.93266 4.96549 5.00080 5.05011 5.10625 5.13612 5.13726 5.29765 5.39458 5.49520 5.50877 5.59041 5.59737 5.66090 5.87372 5.92447 6.07588 6.34041 6.39307 6.51739 6.55513 6.80801 6.85020 7.45549 7.50019 8.91643 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014389 B = 0.004085 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.490245 B = 6853.533559 C = 7585.045257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.063 4.063 3 C -0.140 4.140 4 C 0.119 3.881 5 O -0.541 6.541 6 C 0.066 3.934 7 N -0.664 5.664 8 C 0.548 3.452 9 O -0.576 6.576 10 C -0.117 4.117 11 C 0.088 3.912 12 H 0.011 0.989 13 C -0.495 4.495 14 H 0.026 0.974 15 C 0.037 3.963 16 N -0.883 5.883 17 Si 0.929 3.071 18 H -0.281 1.281 19 H -0.275 1.275 20 H -0.291 1.291 21 C -0.053 4.053 22 C -0.082 4.082 23 C -0.147 4.147 24 C -0.147 4.147 25 C -0.140 4.140 26 C -0.152 4.152 27 C 0.072 3.928 28 H 0.075 0.925 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.111 0.889 32 H 0.057 0.943 33 H 0.072 0.928 34 H 0.045 0.955 35 H 0.382 0.618 36 H 0.109 0.891 37 H 0.056 0.944 38 H 0.126 0.874 39 H 0.068 0.932 40 H 0.263 0.737 41 H 0.133 0.867 42 H 0.128 0.872 43 H 0.137 0.863 44 H 0.133 0.867 45 H 0.102 0.898 46 H 0.081 0.919 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.839 7.921 -13.152 15.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.081 4.081 3 C -0.198 4.198 4 C 0.076 3.924 5 O -0.347 6.347 6 C -0.057 4.057 7 N -0.402 5.402 8 C 0.341 3.659 9 O -0.454 6.454 10 C -0.156 4.156 11 C 0.069 3.931 12 H 0.029 0.971 13 C -0.532 4.532 14 H 0.044 0.956 15 C -0.162 4.162 16 N -0.521 5.521 17 Si 0.757 3.243 18 H -0.207 1.207 19 H -0.200 1.200 20 H -0.217 1.217 21 C -0.054 4.054 22 C -0.101 4.101 23 C -0.165 4.165 24 C -0.165 4.165 25 C -0.158 4.158 26 C -0.170 4.170 27 C -0.051 4.051 28 H 0.094 0.906 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.129 0.871 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.231 0.769 36 H 0.127 0.873 37 H 0.075 0.925 38 H 0.143 0.857 39 H 0.086 0.914 40 H 0.073 0.927 41 H 0.150 0.850 42 H 0.146 0.854 43 H 0.155 0.845 44 H 0.151 0.849 45 H 0.121 0.879 46 H 0.099 0.901 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -1.333 7.849 -13.089 15.320 hybrid contribution -0.423 -0.870 2.000 2.221 sum -1.756 6.979 -11.089 13.219 Atomic orbital electron populations 1.21798 0.94163 1.02051 1.02255 1.21034 0.96792 0.97045 0.93264 1.21712 1.01166 0.94783 1.02090 1.22520 0.93383 0.89134 0.87354 1.86385 1.79918 1.51917 1.16466 1.23951 0.85930 0.95964 0.99890 1.49811 1.13319 1.27941 1.49111 1.20868 0.90706 0.78813 0.75537 1.90601 1.66145 1.35274 1.53423 1.21706 0.89032 1.05924 0.98981 1.17535 0.88948 0.92727 0.93901 0.97072 1.20924 1.24761 1.03535 1.04008 0.95611 1.25202 0.95661 0.95575 0.99789 1.69685 1.39216 1.06318 1.36920 0.86010 0.78439 0.77273 0.82561 1.20700 1.19967 1.21663 1.20259 0.95657 0.93361 0.96119 1.21386 0.93287 0.98139 0.97248 1.21386 0.94643 0.98533 1.01952 1.21217 1.00259 0.92443 1.02561 1.21161 0.93744 0.98763 1.02134 1.21093 0.95151 0.97628 1.03120 1.23995 0.98661 0.83389 0.99036 0.90647 0.92624 0.93625 0.87133 0.92424 0.90883 0.93544 0.76921 0.87280 0.92495 0.85703 0.91398 0.92684 0.84983 0.85447 0.84494 0.84934 0.87936 0.90074 0.86292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.29 9.00 71.98 0.65 -1.64 16 2 C -0.06 -0.99 2.56 -10.79 -0.03 -1.02 16 3 C -0.14 -2.16 8.91 71.98 0.64 -1.52 16 4 C 0.12 2.67 1.04 -10.55 -0.01 2.66 16 5 O -0.54 -14.69 12.83 -148.98 -1.91 -16.60 16 6 C 0.07 1.78 7.30 83.18 0.61 2.39 16 7 N -0.66 -22.48 3.53 -859.21 -3.03 -25.51 16 8 C 0.55 24.62 7.83 87.66 0.69 25.31 16 9 O -0.58 -31.19 15.76 -3.03 -0.05 -31.24 16 10 C -0.12 -5.19 3.99 29.85 0.12 -5.07 16 11 C 0.09 4.46 1.97 -12.29 -0.02 4.44 16 12 H 0.01 0.58 7.90 -2.38 -0.02 0.57 16 13 C -0.49 -27.94 7.27 25.60 0.19 -27.75 16 14 H 0.03 1.58 7.82 -2.91 -0.02 1.56 16 15 C 0.04 2.00 5.14 84.65 0.44 2.44 16 16 N -0.88 -44.60 7.86 21.45 0.17 -44.44 16 17 Si 0.93 44.64 29.54 68.60 2.03 46.67 16 18 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 19 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.29 -14.62 7.11 99.48 0.71 -13.91 16 21 C -0.05 -2.49 4.65 -19.87 -0.09 -2.58 16 22 C -0.08 -3.54 7.45 22.27 0.17 -3.38 16 23 C -0.15 -5.45 10.05 22.27 0.22 -5.22 16 24 C -0.15 -5.00 10.05 22.27 0.22 -4.78 16 25 C -0.14 -5.07 10.05 22.27 0.22 -4.84 16 26 C -0.15 -6.52 9.70 22.27 0.22 -6.31 16 27 C 0.07 1.72 7.75 83.10 0.64 2.36 16 28 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 29 H 0.05 0.87 7.62 -2.39 -0.02 0.85 16 30 H 0.04 0.88 8.10 -2.39 -0.02 0.86 16 31 H 0.11 1.25 7.99 -2.39 -0.02 1.23 16 32 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.05 0.88 7.85 -2.39 -0.02 0.86 16 35 H 0.38 11.12 8.83 -74.06 -0.65 10.47 16 36 H 0.11 2.39 8.10 -2.39 -0.02 2.37 16 37 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.13 5.79 4.73 -2.39 -0.01 5.78 16 39 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 40 H 0.26 12.84 8.31 -92.71 -0.77 12.07 16 41 H 0.13 5.89 5.10 -2.91 -0.01 5.88 16 42 H 0.13 3.99 8.06 -2.91 -0.02 3.97 16 43 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 44 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 45 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 46 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.12 2.11 8.00 -2.39 -0.02 2.09 16 Total: -1.00 -67.12 376.98 2.38 -64.74 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: 0.30 Total: 30.89 kcal Atomic # 6 Polarization: -29.38 SS G_CDS: 4.86 Total: -24.51 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: -2.86 Total: -69.95 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -1.96 Total: -47.84 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -67.12 2.38 -64.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793970343.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.273 kcal (2) G-P(sol) polarization free energy of solvation -67.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds