Wall clock time and date at job start Tue Mar 31 2020 11:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.76187 * 2 1 4 4 O 1.43269 * 109.61623 * 239.55875 * 2 1 3 5 5 C 1.43075 * 113.03198 * 174.80192 * 4 2 1 6 6 C 1.50791 * 109.30103 * 48.58317 * 5 4 2 7 7 C 1.38250 * 119.65931 * 164.24046 * 6 5 4 8 8 C 1.38215 * 120.10586 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.95585 * 179.79658 * 8 7 6 10 10 N 1.46901 * 109.47414 * 273.45718 * 9 8 7 11 11 C 1.46896 * 111.00040 * 185.75147 * 10 9 8 12 12 C 1.53006 * 109.47067 * 181.78750 * 11 10 9 13 13 C 1.50696 * 115.55205 * 295.02859 * 12 11 10 14 14 H 1.08003 * 119.99976 * 114.84332 * 13 12 11 15 15 C 1.37876 * 119.99923 * 294.56995 * 13 12 11 16 16 N 1.31517 * 119.99883 * 174.06436 * 15 13 12 17 17 Si 1.86798 * 120.00231 * 354.05942 * 15 13 12 18 18 H 1.48497 * 109.47097 * 92.60002 * 17 15 13 19 19 H 1.48504 * 109.47174 * 212.60108 * 17 15 13 20 20 H 1.48504 * 109.47103 * 332.59852 * 17 15 13 21 21 C 1.53003 * 117.49428 * 80.69950 * 12 11 10 22 22 C 1.52995 * 117.49447 * 149.35695 * 12 11 10 23 23 C 1.38288 * 120.08903 * 359.52264 * 8 7 6 24 24 C 1.38096 * 120.02848 * 0.32387 * 23 8 7 25 25 C 1.38595 * 120.42426 * 343.94155 * 6 5 4 26 26 O 1.35970 * 120.54661 * 0.32856 * 25 6 5 27 27 H 1.08996 * 109.46962 * 299.55847 * 1 2 3 28 28 H 1.09005 * 109.47104 * 59.55636 * 1 2 3 29 29 H 1.08995 * 109.47416 * 179.55810 * 1 2 3 30 30 H 1.08999 * 109.47786 * 180.44179 * 3 2 1 31 31 H 1.08997 * 109.47262 * 300.44280 * 3 2 1 32 32 H 1.09004 * 109.47122 * 60.44403 * 3 2 1 33 33 H 1.09002 * 109.50444 * 168.53411 * 5 4 2 34 34 H 1.08999 * 109.50284 * 288.64241 * 5 4 2 35 35 H 1.08004 * 119.94744 * 359.82447 * 7 6 5 36 36 H 1.09002 * 109.47070 * 153.45646 * 9 8 7 37 37 H 1.08996 * 109.46947 * 33.45934 * 9 8 7 38 38 H 1.00901 * 110.99937 * 61.79508 * 10 9 8 39 39 H 1.09002 * 109.46999 * 61.79141 * 11 10 9 40 40 H 1.08994 * 109.47242 * 301.79019 * 11 10 9 41 41 H 0.97001 * 120.00085 * 180.02562 * 16 15 13 42 42 H 1.09002 * 117.49489 * 215.00236 * 21 12 11 43 43 H 1.08994 * 117.49964 * 0.02562 * 21 12 11 44 44 H 1.08997 * 117.50773 * 359.97438 * 22 12 11 45 45 H 1.09005 * 117.49401 * 144.97909 * 22 12 11 46 46 H 1.08003 * 119.98768 * 180.29589 * 23 8 7 47 47 H 1.07999 * 120.00235 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0472 1.4398 0.0000 4 8 2.0109 -0.6837 -1.1635 5 6 3.4340 -0.6250 -1.2990 6 6 4.0755 -0.9998 0.0132 7 6 5.4170 -1.3321 0.0486 8 6 6.0143 -1.6775 1.2462 9 6 7.4758 -2.0436 1.2802 10 7 7.6289 -3.4754 0.9895 11 6 9.0269 -3.8981 1.1475 12 6 9.1543 -5.3812 0.7940 13 6 8.4216 -6.3319 1.7052 14 1 7.5981 -6.9180 1.3247 15 6 8.8062 -6.4577 3.0232 16 7 8.0967 -7.1972 3.8475 17 14 10.3351 -5.5781 3.6382 18 1 9.9551 -4.2537 4.1919 19 1 10.9810 -6.3915 4.6995 20 1 11.2846 -5.3899 2.5120 21 6 9.2408 -5.7491 -0.6887 22 6 10.4826 -5.8542 0.2002 23 6 5.2740 -1.6823 2.4142 24 6 3.9344 -1.3481 2.3847 25 6 3.3306 -1.0068 1.1819 26 8 2.0102 -0.6828 1.1617 27 1 -0.3633 0.5069 0.8939 28 1 -0.3633 0.5207 -0.8860 29 1 -0.3634 -1.0276 -0.0079 30 1 3.1372 1.4344 -0.0079 31 1 1.6801 1.9578 -0.8860 32 1 1.6930 1.9532 0.8940 33 1 3.7550 -1.3221 -2.0731 34 1 3.7320 0.3869 -1.5736 35 1 5.9985 -1.3248 -0.8615 36 1 7.8814 -1.8281 2.2687 37 1 8.0136 -1.4614 0.5320 38 1 7.2867 -3.6955 0.0662 39 1 9.3389 -3.7427 2.1803 40 1 9.6613 -3.3105 0.4840 41 1 8.3670 -7.2854 4.7749 42 1 8.7677 -6.6787 -1.0049 43 1 9.2073 -4.9345 -1.4120 44 1 11.2656 -5.1088 0.0609 45 1 10.8267 -6.8530 0.4689 46 1 5.7435 -1.9479 3.3499 47 1 3.3565 -1.3523 3.2970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797603862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:49 Heat of formation + Delta-G solvation = -30.418353 kcal Electronic energy + Delta-G solvation = -26621.047316 eV Core-core repulsion = 22962.808557 eV Total energy + Delta-G solvation = -3658.238759 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.29386 -38.59608 -37.30776 -36.54986 -34.63142 -32.82217 -31.97795 -31.57630 -30.20128 -28.02837 -26.53366 -26.16478 -25.18413 -23.33668 -22.96362 -21.74152 -21.32503 -19.55209 -18.92075 -18.84674 -16.96435 -16.50901 -16.16075 -15.77399 -15.28383 -15.13170 -14.77628 -14.51947 -14.25900 -14.13859 -13.92969 -13.62625 -13.38572 -13.15225 -12.96899 -12.76268 -12.61764 -12.55153 -12.45101 -12.19956 -12.05606 -11.81741 -11.61431 -11.25092 -11.13134 -10.90843 -10.74299 -10.55751 -10.43458 -10.23763 -10.09571 -9.39921 -9.00418 -8.78634 -8.57138 -8.36301 -8.09733 -7.65055 -5.97231 -3.94659 1.30420 1.41886 2.96417 3.24308 3.32666 3.43284 3.48859 3.72145 4.28166 4.37791 4.49592 4.51943 4.68229 4.74196 4.97544 5.03376 5.09113 5.16841 5.19055 5.21414 5.25166 5.27269 5.34013 5.36752 5.51197 5.60133 5.64429 5.73128 5.75826 5.85517 5.86514 6.01462 6.08722 6.16955 6.21460 6.25428 6.29696 6.47658 6.56029 6.58365 6.75719 6.77168 6.82196 7.10730 7.15859 7.34453 7.72737 7.85772 8.05021 8.64068 9.06188 9.66655 11.15536 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.002941 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.496725 B = 9516.943865 C = 9945.574581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.267 3.733 3 C -0.202 4.202 4 O -0.379 6.379 5 C 0.105 3.895 6 C -0.206 4.206 7 C -0.071 4.071 8 C -0.095 4.095 9 C 0.098 3.902 10 N -0.658 5.658 11 C 0.097 3.903 12 C 0.006 3.994 13 C -0.462 4.462 14 H 0.074 0.926 15 C 0.079 3.921 16 N -0.900 5.900 17 Si 0.868 3.132 18 H -0.281 1.281 19 H -0.295 1.295 20 H -0.252 1.252 21 C -0.187 4.187 22 C -0.195 4.195 23 C -0.056 4.056 24 C -0.145 4.145 25 C 0.130 3.870 26 O -0.323 6.323 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.068 0.932 35 H 0.123 0.877 36 H 0.076 0.924 37 H 0.028 0.972 38 H 0.338 0.662 39 H 0.064 0.936 40 H 0.005 0.995 41 H 0.262 0.738 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.133 0.867 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.031 19.370 -8.557 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.192 3.808 3 C -0.260 4.260 4 O -0.299 6.299 5 C 0.029 3.971 6 C -0.207 4.207 7 C -0.089 4.089 8 C -0.096 4.096 9 C -0.031 4.031 10 N -0.288 5.288 11 C -0.032 4.032 12 C 0.004 3.996 13 C -0.499 4.499 14 H 0.092 0.908 15 C -0.122 4.122 16 N -0.538 5.538 17 Si 0.697 3.303 18 H -0.208 1.208 19 H -0.222 1.222 20 H -0.176 1.176 21 C -0.224 4.224 22 C -0.233 4.233 23 C -0.075 4.075 24 C -0.164 4.164 25 C 0.086 3.914 26 O -0.240 6.240 27 H 0.101 0.899 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.129 0.871 34 H 0.086 0.914 35 H 0.141 0.859 36 H 0.095 0.905 37 H 0.046 0.954 38 H 0.156 0.844 39 H 0.082 0.918 40 H 0.023 0.977 41 H 0.071 0.929 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.105 0.895 46 H 0.151 0.849 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -10.494 18.976 -7.725 23.019 hybrid contribution 1.554 0.898 -0.302 1.820 sum -8.941 19.874 -8.027 23.224 Atomic orbital electron populations 1.21649 0.88834 1.04540 1.03604 1.23146 0.94748 0.87865 0.75064 1.22834 1.03017 0.95922 1.04185 1.88295 1.21537 1.75879 1.44189 1.21470 0.79531 1.01591 0.94536 1.20137 0.95849 1.09635 0.95059 1.20564 0.92869 0.97708 0.97805 1.19731 0.96502 1.00430 0.92941 1.20845 0.90989 0.90023 1.01204 1.60192 1.20940 1.12975 1.34708 1.21704 0.86750 0.95290 0.99422 1.19420 0.95778 0.92142 0.92212 1.20136 1.15619 1.20951 0.93189 0.90758 1.24852 0.96250 0.94710 0.96402 1.69910 1.38574 1.40531 1.04785 0.87021 0.84943 0.79431 0.78949 1.20812 1.22223 1.17624 1.22769 1.03438 1.01726 0.94482 1.23063 0.91513 1.01760 1.06968 1.20950 0.92526 0.95265 0.98728 1.20533 0.94937 1.05001 0.95905 1.18463 0.82443 0.97161 0.93361 1.86275 1.22138 1.73278 1.42272 0.89885 0.89723 0.90480 0.91213 0.90063 0.90164 0.87093 0.91392 0.85911 0.90549 0.95403 0.84404 0.91829 0.97730 0.92858 0.89753 0.91508 0.91600 0.89546 0.84872 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 9.25 37.15 0.34 -0.69 16 2 C 0.27 2.89 1.51 -26.74 -0.04 2.85 16 3 C -0.20 -1.70 8.25 37.15 0.31 -1.39 16 4 O -0.38 -4.62 10.48 -59.11 -0.62 -5.24 16 5 C 0.10 1.14 6.18 36.05 0.22 1.36 16 6 C -0.21 -2.72 5.24 -104.44 -0.55 -3.26 16 7 C -0.07 -0.93 9.38 -39.59 -0.37 -1.30 16 8 C -0.10 -1.41 5.44 -104.61 -0.57 -1.98 16 9 C 0.10 1.53 5.81 -4.98 -0.03 1.50 16 10 N -0.66 -12.60 6.37 -115.06 -0.73 -13.33 16 11 C 0.10 2.01 5.14 -3.82 -0.02 1.99 16 12 C 0.01 0.13 0.94 -155.66 -0.15 -0.02 16 13 C -0.46 -12.91 9.29 -34.44 -0.32 -13.23 16 14 H 0.07 2.31 8.06 -52.48 -0.42 1.88 16 15 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 16 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 17 Si 0.87 21.52 25.00 -169.99 -4.25 17.27 16 18 H -0.28 -6.86 6.99 56.52 0.40 -6.47 16 19 H -0.30 -7.42 7.11 56.52 0.40 -7.01 16 20 H -0.25 -5.86 5.73 56.52 0.32 -5.53 16 21 C -0.19 -3.74 9.96 -26.69 -0.27 -4.01 16 22 C -0.19 -4.10 8.02 -26.70 -0.21 -4.31 16 23 C -0.06 -0.84 9.68 -39.62 -0.38 -1.22 16 24 C -0.15 -2.08 9.97 -39.41 -0.39 -2.47 16 25 C 0.13 1.87 6.13 -39.23 -0.24 1.63 16 26 O -0.32 -4.41 9.87 -43.53 -0.43 -4.84 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.65 5.99 -51.93 -0.31 0.34 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.07 0.60 6.95 -51.93 -0.36 0.24 16 35 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 36 H 0.08 1.21 8.04 -51.93 -0.42 0.79 16 37 H 0.03 0.38 8.11 -51.93 -0.42 -0.04 16 38 H 0.34 6.14 8.76 -39.29 -0.34 5.80 16 39 H 0.06 1.42 5.06 -51.93 -0.26 1.16 16 40 H 0.00 0.09 8.09 -51.93 -0.42 -0.33 16 41 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 45 H 0.09 1.89 8.14 -51.93 -0.42 1.46 16 46 H 0.13 1.93 8.06 -52.48 -0.42 1.50 16 47 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -32.32 374.14 -10.06 -42.38 By element: Atomic # 1 Polarization: 15.19 SS G_CDS: -7.68 Total: 7.51 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: -2.76 Total: -22.38 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.04 Total: -40.34 kcal Atomic # 8 Polarization: -9.03 SS G_CDS: -1.05 Total: -10.08 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -4.25 Total: 17.27 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.32 -10.06 -42.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797603862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.962 kcal (2) G-P(sol) polarization free energy of solvation -32.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds