Wall clock time and date at job start Tue Mar 31 2020 11:08:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.76187 * 2 1 4 4 O 1.43269 * 109.61623 * 239.55875 * 2 1 3 5 5 C 1.43075 * 113.03198 * 174.80192 * 4 2 1 6 6 C 1.50791 * 109.30103 * 48.58317 * 5 4 2 7 7 C 1.38250 * 119.65931 * 164.24046 * 6 5 4 8 8 C 1.38215 * 120.10586 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.95585 * 179.79658 * 8 7 6 10 10 N 1.46901 * 109.47414 * 273.45718 * 9 8 7 11 11 C 1.46896 * 111.00040 * 185.75147 * 10 9 8 12 12 C 1.53006 * 109.47067 * 181.78750 * 11 10 9 13 13 C 1.50696 * 115.55205 * 295.02859 * 12 11 10 14 14 H 1.08003 * 119.99976 * 114.84332 * 13 12 11 15 15 C 1.37876 * 119.99923 * 294.56995 * 13 12 11 16 16 N 1.31517 * 119.99883 * 174.06436 * 15 13 12 17 17 Si 1.86798 * 120.00231 * 354.05942 * 15 13 12 18 18 H 1.48497 * 109.47097 * 92.60002 * 17 15 13 19 19 H 1.48504 * 109.47174 * 212.60108 * 17 15 13 20 20 H 1.48504 * 109.47103 * 332.59852 * 17 15 13 21 21 C 1.53003 * 117.49428 * 80.69950 * 12 11 10 22 22 C 1.52995 * 117.49447 * 149.35695 * 12 11 10 23 23 C 1.38288 * 120.08903 * 359.52264 * 8 7 6 24 24 C 1.38096 * 120.02848 * 0.32387 * 23 8 7 25 25 C 1.38595 * 120.42426 * 343.94155 * 6 5 4 26 26 O 1.35970 * 120.54661 * 0.32856 * 25 6 5 27 27 H 1.08996 * 109.46962 * 299.55847 * 1 2 3 28 28 H 1.09005 * 109.47104 * 59.55636 * 1 2 3 29 29 H 1.08995 * 109.47416 * 179.55810 * 1 2 3 30 30 H 1.08999 * 109.47786 * 180.44179 * 3 2 1 31 31 H 1.08997 * 109.47262 * 300.44280 * 3 2 1 32 32 H 1.09004 * 109.47122 * 60.44403 * 3 2 1 33 33 H 1.09002 * 109.50444 * 168.53411 * 5 4 2 34 34 H 1.08999 * 109.50284 * 288.64241 * 5 4 2 35 35 H 1.08004 * 119.94744 * 359.82447 * 7 6 5 36 36 H 1.09002 * 109.47070 * 153.45646 * 9 8 7 37 37 H 1.08996 * 109.46947 * 33.45934 * 9 8 7 38 38 H 1.00901 * 110.99937 * 61.79508 * 10 9 8 39 39 H 1.09002 * 109.46999 * 61.79141 * 11 10 9 40 40 H 1.08994 * 109.47242 * 301.79019 * 11 10 9 41 41 H 0.97001 * 120.00085 * 180.02562 * 16 15 13 42 42 H 1.09002 * 117.49489 * 215.00236 * 21 12 11 43 43 H 1.08994 * 117.49964 * 0.02562 * 21 12 11 44 44 H 1.08997 * 117.50773 * 359.97438 * 22 12 11 45 45 H 1.09005 * 117.49401 * 144.97909 * 22 12 11 46 46 H 1.08003 * 119.98768 * 180.29589 * 23 8 7 47 47 H 1.07999 * 120.00235 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0472 1.4398 0.0000 4 8 2.0109 -0.6837 -1.1635 5 6 3.4340 -0.6250 -1.2990 6 6 4.0755 -0.9998 0.0132 7 6 5.4170 -1.3321 0.0486 8 6 6.0143 -1.6775 1.2462 9 6 7.4758 -2.0436 1.2802 10 7 7.6289 -3.4754 0.9895 11 6 9.0269 -3.8981 1.1475 12 6 9.1543 -5.3812 0.7940 13 6 8.4216 -6.3319 1.7052 14 1 7.5981 -6.9180 1.3247 15 6 8.8062 -6.4577 3.0232 16 7 8.0967 -7.1972 3.8475 17 14 10.3351 -5.5781 3.6382 18 1 9.9551 -4.2537 4.1919 19 1 10.9810 -6.3915 4.6995 20 1 11.2846 -5.3899 2.5120 21 6 9.2408 -5.7491 -0.6887 22 6 10.4826 -5.8542 0.2002 23 6 5.2740 -1.6823 2.4142 24 6 3.9344 -1.3481 2.3847 25 6 3.3306 -1.0068 1.1819 26 8 2.0102 -0.6828 1.1617 27 1 -0.3633 0.5069 0.8939 28 1 -0.3633 0.5207 -0.8860 29 1 -0.3634 -1.0276 -0.0079 30 1 3.1372 1.4344 -0.0079 31 1 1.6801 1.9578 -0.8860 32 1 1.6930 1.9532 0.8940 33 1 3.7550 -1.3221 -2.0731 34 1 3.7320 0.3869 -1.5736 35 1 5.9985 -1.3248 -0.8615 36 1 7.8814 -1.8281 2.2687 37 1 8.0136 -1.4614 0.5320 38 1 7.2867 -3.6955 0.0662 39 1 9.3389 -3.7427 2.1803 40 1 9.6613 -3.3105 0.4840 41 1 8.3670 -7.2854 4.7749 42 1 8.7677 -6.6787 -1.0049 43 1 9.2073 -4.9345 -1.4120 44 1 11.2656 -5.1088 0.0609 45 1 10.8267 -6.8530 0.4689 46 1 5.7435 -1.9479 3.3499 47 1 3.3565 -1.3523 3.2970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797603862.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:48 Heat of formation + Delta-G solvation = -51.156824 kcal Electronic energy + Delta-G solvation = -26621.946604 eV Core-core repulsion = 22962.808557 eV Total energy + Delta-G solvation = -3659.138046 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.21752 -39.69071 -38.88287 -37.49764 -35.95957 -34.15735 -33.71866 -32.54260 -31.32485 -28.75522 -28.17574 -27.05896 -26.86667 -24.73607 -23.91727 -23.16151 -22.59692 -20.88733 -20.37648 -19.82321 -18.38916 -17.86771 -17.19480 -16.95544 -16.68509 -16.17521 -16.09600 -15.72349 -15.51431 -15.32103 -15.15040 -15.00167 -14.78622 -14.46409 -14.32785 -13.74481 -13.59090 -13.54310 -13.37173 -13.18550 -13.13618 -12.92918 -12.87728 -12.74289 -12.43677 -12.27380 -12.20088 -12.11236 -11.90273 -11.63741 -11.31388 -11.11668 -10.88277 -10.52462 -10.24734 -9.81891 -9.23037 -8.99393 -8.18884 -6.20105 0.24311 0.34155 1.36192 1.41531 1.54083 2.07163 2.43300 2.44267 2.65589 3.06225 3.32444 3.49902 3.58730 3.65744 3.71368 3.78214 3.90731 4.15637 4.24598 4.27602 4.32171 4.37262 4.41151 4.46593 4.50840 4.55565 4.60464 4.62930 4.65133 4.68420 4.71127 4.86683 4.88091 4.93108 4.97592 5.03269 5.08106 5.14132 5.20204 5.29368 5.42813 5.54767 5.64840 5.67167 5.79946 5.83888 6.30616 6.37480 6.40902 6.67827 6.83773 7.45030 8.98100 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021328 B = 0.002941 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.496725 B = 9516.943865 C = 9945.574581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.251 3.749 3 C -0.196 4.196 4 O -0.394 6.394 5 C 0.101 3.899 6 C -0.208 4.208 7 C -0.066 4.066 8 C -0.109 4.109 9 C 0.104 3.896 10 N -0.683 5.683 11 C 0.105 3.895 12 C -0.024 4.024 13 C -0.458 4.458 14 H 0.021 0.979 15 C 0.018 3.982 16 N -0.957 5.957 17 Si 0.934 3.066 18 H -0.275 1.275 19 H -0.303 1.303 20 H -0.221 1.221 21 C -0.167 4.167 22 C -0.187 4.187 23 C -0.074 4.074 24 C -0.159 4.159 25 C 0.117 3.883 26 O -0.340 6.340 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.124 0.876 34 H 0.094 0.906 35 H 0.150 0.850 36 H 0.068 0.932 37 H 0.057 0.943 38 H 0.342 0.658 39 H 0.044 0.956 40 H 0.039 0.961 41 H 0.260 0.740 42 H 0.071 0.929 43 H 0.104 0.896 44 H 0.097 0.903 45 H 0.072 0.928 46 H 0.126 0.874 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.799 22.305 -11.033 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.177 3.823 3 C -0.253 4.253 4 O -0.315 6.315 5 C 0.026 3.974 6 C -0.209 4.209 7 C -0.085 4.085 8 C -0.110 4.110 9 C -0.024 4.024 10 N -0.315 5.315 11 C -0.024 4.024 12 C -0.025 4.025 13 C -0.496 4.496 14 H 0.039 0.961 15 C -0.178 4.178 16 N -0.598 5.598 17 Si 0.759 3.241 18 H -0.202 1.202 19 H -0.231 1.231 20 H -0.143 1.143 21 C -0.204 4.204 22 C -0.225 4.225 23 C -0.093 4.093 24 C -0.177 4.177 25 C 0.072 3.928 26 O -0.257 6.257 27 H 0.115 0.885 28 H 0.125 0.875 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.106 0.894 33 H 0.142 0.858 34 H 0.112 0.888 35 H 0.168 0.832 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.161 0.839 39 H 0.062 0.938 40 H 0.057 0.943 41 H 0.069 0.931 42 H 0.090 0.910 43 H 0.122 0.878 44 H 0.116 0.884 45 H 0.090 0.910 46 H 0.144 0.856 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.262 21.930 -10.240 25.914 hybrid contribution 0.998 -0.060 0.386 1.071 sum -8.264 21.870 -9.854 25.371 Atomic orbital electron populations 1.21749 0.87087 1.04294 1.05394 1.23717 0.96110 0.88629 0.73857 1.22804 1.02374 0.94454 1.05673 1.88276 1.22191 1.76436 1.44595 1.21679 0.78943 1.03389 0.93396 1.20479 0.95943 1.08695 0.95797 1.20811 0.93032 0.96531 0.98097 1.19778 0.96349 1.01359 0.93491 1.20819 0.91690 0.88329 1.01572 1.60092 1.20501 1.15597 1.35306 1.21495 0.88173 0.93728 0.98963 1.19333 0.97285 0.92602 0.93284 1.20320 1.14219 1.20907 0.94150 0.96065 1.25724 0.99627 0.95753 0.96695 1.70086 1.41133 1.43383 1.05199 0.85985 0.81262 0.77961 0.78907 1.20164 1.23074 1.14322 1.22813 1.01938 1.02264 0.93415 1.23082 0.91664 1.01777 1.06003 1.21018 0.93030 0.96242 0.98973 1.20653 0.94969 1.05496 0.96628 1.18665 0.83065 0.97273 0.93772 1.86261 1.21742 1.73742 1.43959 0.88519 0.87484 0.91761 0.92119 0.87839 0.89393 0.85810 0.88834 0.83235 0.91370 0.92530 0.83902 0.93760 0.94305 0.93093 0.91036 0.87769 0.88426 0.90974 0.85590 0.84699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.25 71.98 0.67 -1.18 16 2 C 0.25 5.06 1.51 30.59 0.05 5.10 16 3 C -0.20 -2.84 8.25 71.98 0.59 -2.25 16 4 O -0.39 -8.93 10.48 -126.15 -1.32 -10.25 16 5 C 0.10 1.96 6.18 71.26 0.44 2.40 16 6 C -0.21 -5.19 5.24 -19.75 -0.10 -5.30 16 7 C -0.07 -1.61 9.38 22.27 0.21 -1.40 16 8 C -0.11 -3.13 5.44 -19.86 -0.11 -3.24 16 9 C 0.10 3.05 5.81 85.56 0.50 3.54 16 10 N -0.68 -25.11 6.37 -517.93 -3.30 -28.41 16 11 C 0.11 4.06 5.14 86.31 0.44 4.51 16 12 C -0.02 -1.06 0.94 -52.93 -0.05 -1.11 16 13 C -0.46 -26.32 9.29 25.60 0.24 -26.08 16 14 H 0.02 1.39 8.06 -2.91 -0.02 1.37 16 15 C 0.02 1.06 5.47 84.65 0.46 1.52 16 16 N -0.96 -61.84 13.96 21.45 0.30 -61.54 16 17 Si 0.93 44.70 25.00 68.60 1.72 46.42 16 18 H -0.28 -12.83 6.99 99.48 0.70 -12.13 16 19 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 20 H -0.22 -9.33 5.73 99.48 0.57 -8.76 16 21 C -0.17 -6.22 9.96 30.62 0.30 -5.92 16 22 C -0.19 -7.25 8.02 30.62 0.25 -7.01 16 23 C -0.07 -2.26 9.68 22.25 0.22 -2.05 16 24 C -0.16 -4.69 9.97 22.38 0.22 -4.46 16 25 C 0.12 3.34 6.13 22.50 0.14 3.48 16 26 O -0.34 -9.19 9.87 -70.38 -0.69 -9.89 16 27 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.11 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.06 0.99 5.99 -2.39 -0.01 0.98 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 33 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.09 1.34 6.95 -2.39 -0.02 1.32 16 35 H 0.15 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.07 2.08 8.04 -2.39 -0.02 2.06 16 37 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 38 H 0.34 11.77 8.76 -89.69 -0.79 10.98 16 39 H 0.04 1.87 5.06 -2.39 -0.01 1.86 16 40 H 0.04 1.25 8.09 -2.39 -0.02 1.23 16 41 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 42 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 43 H 0.10 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 45 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 46 H 0.13 3.87 8.06 -2.91 -0.02 3.85 16 47 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -73.45 374.14 1.19 -72.26 By element: Atomic # 1 Polarization: 30.81 SS G_CDS: 0.03 Total: 30.84 kcal Atomic # 6 Polarization: -43.89 SS G_CDS: 4.46 Total: -39.43 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -3.00 Total: -89.96 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -2.02 Total: -20.14 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 1.72 Total: 46.42 kcal Total: -73.45 1.19 -72.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797603862.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.102 kcal (2) G-P(sol) polarization free energy of solvation -73.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds