Wall clock time and date at job start Tue Mar 31 2020 12:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47293 * 2 1 4 4 O 1.42907 * 109.47541 * 239.99557 * 2 1 3 5 5 C 1.53004 * 109.47356 * 119.99720 * 2 1 3 6 6 C 1.53036 * 109.46265 * 184.99993 * 5 2 1 7 7 C 1.53196 * 109.30916 * 181.37163 * 6 5 2 8 8 N 1.46928 * 108.77712 * 305.36384 * 7 6 5 9 9 C 1.34775 * 120.63021 * 233.58510 * 8 7 6 10 10 O 1.21583 * 120.00281 * 355.69297 * 9 8 7 11 11 C 1.47642 * 119.99668 * 175.68993 * 9 8 7 12 12 C 1.40018 * 119.89314 * 225.97517 * 11 9 8 13 13 C 1.36322 * 120.10309 * 179.72349 * 12 11 9 14 14 C 1.40884 * 119.89138 * 0.52219 * 13 12 11 15 15 C 1.41110 * 120.10252 * 179.72303 * 14 13 12 16 16 H 1.07999 * 119.99745 * 205.18367 * 15 14 13 17 17 C 1.40230 * 119.99961 * 25.18204 * 15 14 13 18 18 N 1.30646 * 120.00059 * 17.03336 * 17 15 14 19 19 Si 1.86801 * 120.00000 * 197.03136 * 17 15 14 20 20 H 1.48494 * 109.47114 * 59.99969 * 19 17 15 21 21 H 1.48502 * 109.47090 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46974 * 300.00107 * 19 17 15 23 23 C 1.40889 * 119.79747 * 359.75056 * 14 13 12 24 24 C 1.36324 * 119.88640 * 359.97438 * 23 14 13 25 25 C 1.46931 * 118.73568 * 53.86295 * 8 7 6 26 26 C 1.53039 * 109.44628 * 305.06716 * 5 2 1 27 27 H 1.09004 * 109.47251 * 300.00304 * 1 2 3 28 28 H 1.09010 * 109.46944 * 60.00457 * 1 2 3 29 29 H 1.09001 * 109.47365 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47271 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47185 * 299.99538 * 3 2 1 32 32 H 1.08995 * 109.47443 * 59.99770 * 3 2 1 33 33 H 0.96698 * 113.99473 * 60.00309 * 4 2 1 34 34 H 1.09005 * 109.45626 * 65.02354 * 5 2 1 35 35 H 1.08999 * 109.49521 * 61.42585 * 6 5 2 36 36 H 1.08996 * 109.52523 * 301.34064 * 6 5 2 37 37 H 1.08999 * 109.58471 * 185.57741 * 7 6 5 38 38 H 1.09000 * 109.70538 * 65.22495 * 7 6 5 39 39 H 1.08000 * 119.94466 * 359.97438 * 12 11 9 40 40 H 1.08003 * 120.04872 * 180.24892 * 13 12 11 41 41 H 0.96991 * 120.00494 * 180.02562 * 18 17 15 42 42 H 1.07993 * 120.05420 * 179.97438 * 23 14 13 43 43 H 1.07998 * 119.94039 * 179.97438 * 24 23 14 44 44 H 1.09003 * 109.58344 * 65.92733 * 25 8 7 45 45 H 1.08999 * 109.58375 * 186.34894 * 25 8 7 46 46 H 1.09009 * 109.49608 * 298.56607 * 26 5 2 47 47 H 1.09003 * 109.50348 * 58.63189 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 6 3.5652 -0.6131 1.3135 7 6 4.0749 -1.3653 2.5469 8 7 3.3827 -0.8486 3.7355 9 6 4.0821 -0.4073 4.7997 10 8 5.2938 -0.5065 4.8146 11 6 3.3767 0.1967 5.9475 12 6 3.8505 1.3887 6.5090 13 6 3.1993 1.9531 7.5653 14 6 2.0543 1.3292 8.0989 15 6 1.3802 1.9065 9.1959 16 1 0.7912 1.2860 9.8550 17 6 1.4751 3.2858 9.4303 18 7 1.8919 4.0824 8.4824 19 14 1.0056 3.9843 11.0980 20 1 1.8668 3.3820 12.1472 21 1 1.1932 5.4574 11.0883 22 1 -0.4170 3.6688 11.3841 23 6 1.5847 0.1269 7.5342 24 6 2.2393 -0.4270 6.4744 25 6 1.9136 -0.8279 3.7442 26 6 1.4282 -0.0766 2.4952 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6767 1.9563 0.8899 33 1 1.7211 -0.2702 -1.9979 34 1 1.7519 -1.7716 1.2052 35 1 3.8529 0.4360 1.3826 36 1 3.9996 -1.0511 0.4149 37 1 5.1484 -1.2089 2.6524 38 1 3.8697 -2.4303 2.4386 39 1 4.7308 1.8638 6.1020 40 1 3.5631 2.8746 7.9952 41 1 1.9579 5.0363 8.6445 42 1 0.7077 -0.3550 7.9401 43 1 1.8804 -1.3488 6.0411 44 1 1.5337 -1.8495 3.7301 45 1 1.5607 -0.3169 4.6400 46 1 1.7361 0.9675 2.5531 47 1 0.3411 -0.1327 2.4374 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827787576.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:59:49 Heat of formation + Delta-G solvation = -77.283134 kcal Electronic energy + Delta-G solvation = -27129.845994 eV Core-core repulsion = 23469.575025 eV Total energy + Delta-G solvation = -3660.270968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.16962 -38.80306 -37.21237 -36.21635 -33.94281 -33.37149 -31.52685 -30.20535 -29.98182 -29.43186 -27.58566 -26.25137 -24.95709 -23.13599 -22.32967 -21.09109 -20.86734 -19.55001 -18.48130 -17.55215 -16.74014 -16.51253 -15.84254 -15.48190 -15.38499 -14.75703 -14.46191 -14.22675 -13.99092 -13.92228 -13.59523 -13.24550 -13.16310 -12.84335 -12.41385 -12.36245 -12.23299 -12.08390 -12.04930 -11.86073 -11.85095 -11.58434 -11.41603 -11.20433 -11.06724 -10.87153 -10.77598 -10.62422 -10.35464 -10.30280 -10.04813 -9.94883 -9.53705 -9.31694 -8.93427 -8.20643 -7.67873 -7.49135 -6.97590 -4.56675 2.36498 2.94126 2.96371 2.98434 3.02535 3.51014 3.70982 3.78123 3.99683 4.48124 4.55548 4.61715 4.81013 5.00840 5.07775 5.24140 5.31052 5.33883 5.41500 5.51264 5.53882 5.58713 5.66534 5.70850 5.78109 5.84747 5.94204 5.97449 6.02879 6.06596 6.08611 6.16289 6.21749 6.25025 6.26948 6.46782 6.80494 6.85242 7.01715 7.05584 7.13453 7.44860 7.50305 7.60934 7.81241 7.87649 8.04307 8.12853 8.44546 8.66894 8.77331 8.96921 9.94792 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018290 B = 0.003174 C = 0.002934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1530.482255 B = 8819.287330 C = 9541.650422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.131 3.869 3 C -0.183 4.183 4 O -0.561 6.561 5 C -0.070 4.070 6 C -0.125 4.125 7 C 0.112 3.888 8 N -0.616 5.616 9 C 0.578 3.422 10 O -0.566 6.566 11 C -0.272 4.272 12 C -0.045 4.045 13 C -0.175 4.175 14 C 0.126 3.874 15 C -0.449 4.449 16 H 0.083 0.917 17 C 0.075 3.925 18 N -0.776 5.776 19 Si 0.912 3.088 20 H -0.261 1.261 21 H -0.276 1.276 22 H -0.263 1.263 23 C -0.233 4.233 24 C -0.059 4.059 25 C 0.097 3.903 26 C -0.132 4.132 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.372 0.628 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.057 0.943 39 H 0.092 0.908 40 H 0.121 0.879 41 H 0.286 0.714 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.059 0.941 45 H 0.115 0.885 46 H 0.073 0.927 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.546 -3.878 -13.923 15.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.090 3.910 3 C -0.240 4.240 4 O -0.366 6.366 5 C -0.088 4.088 6 C -0.163 4.163 7 C -0.011 4.011 8 N -0.350 5.350 9 C 0.372 3.628 10 O -0.446 6.446 11 C -0.276 4.276 12 C -0.065 4.065 13 C -0.194 4.194 14 C 0.123 3.877 15 C -0.477 4.477 16 H 0.101 0.899 17 C -0.145 4.145 18 N -0.400 5.400 19 Si 0.736 3.264 20 H -0.185 1.185 21 H -0.201 1.201 22 H -0.188 1.188 23 C -0.252 4.252 24 C -0.077 4.077 25 C -0.026 4.026 26 C -0.170 4.170 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.219 0.781 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.076 0.924 39 H 0.111 0.889 40 H 0.139 0.861 41 H 0.097 0.903 42 H 0.115 0.885 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.133 0.867 46 H 0.091 0.909 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.588 -4.053 -13.517 14.560 hybrid contribution -0.659 0.811 0.120 1.052 sum -4.248 -3.242 -13.397 14.424 Atomic orbital electron populations 1.22568 0.95947 1.02679 1.02647 1.21200 0.92313 0.91405 0.86033 1.22602 1.02626 0.96326 1.02465 1.86554 1.77281 1.57197 1.15611 1.21053 0.95796 0.99914 0.92058 1.21963 0.94990 1.01454 0.97883 1.21469 0.98525 0.96770 0.84321 1.48040 1.06560 1.64491 1.15902 1.18790 0.86454 0.75534 0.82000 1.90644 1.14744 1.57763 1.81438 1.18840 1.03211 1.02370 1.03224 1.20347 0.97135 0.93508 0.95493 1.20993 0.96902 1.02278 0.99248 1.17728 0.89642 0.90103 0.90230 1.19747 1.25913 0.92571 1.09495 0.89939 1.26054 0.92912 0.97341 0.98225 1.69724 1.32089 1.05782 1.32370 0.86293 0.80197 0.77980 0.81946 1.18549 1.20119 1.18767 1.20683 1.02542 1.01195 1.00792 1.20382 0.93659 0.97374 0.96321 1.22222 0.80143 1.00190 1.00043 1.22208 1.00369 1.00698 0.93732 0.90870 0.92656 0.91872 0.91385 0.92782 0.91066 0.78140 0.90637 0.91403 0.90550 0.89383 0.92449 0.88940 0.86148 0.90288 0.88486 0.88672 0.92279 0.86702 0.90876 0.90592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.52 8.33 37.15 0.31 -1.21 16 2 C 0.13 1.27 0.87 -90.62 -0.08 1.19 16 3 C -0.18 -1.76 8.08 37.16 0.30 -1.46 16 4 O -0.56 -5.49 12.49 -35.23 -0.44 -5.93 16 5 C -0.07 -0.79 1.75 -90.58 -0.16 -0.95 16 6 C -0.12 -1.57 4.73 -26.61 -0.13 -1.70 16 7 C 0.11 1.66 6.42 -3.71 -0.02 1.64 16 8 N -0.62 -10.58 2.97 -173.68 -0.52 -11.10 16 9 C 0.58 12.45 7.27 -12.42 -0.09 12.36 16 10 O -0.57 -13.80 16.42 5.29 0.09 -13.71 16 11 C -0.27 -6.16 5.20 -104.73 -0.54 -6.70 16 12 C -0.05 -1.10 9.62 -39.60 -0.38 -1.48 16 13 C -0.17 -4.42 8.63 -39.27 -0.34 -4.76 16 14 C 0.13 3.17 5.57 -106.80 -0.60 2.58 16 15 C -0.45 -11.13 9.05 -37.74 -0.34 -11.47 16 16 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 17 C 0.08 1.77 5.15 -17.31 -0.09 1.68 16 18 N -0.78 -18.79 10.94 55.56 0.61 -18.18 16 19 Si 0.91 17.44 29.59 -169.99 -5.03 12.41 16 20 H -0.26 -5.01 7.11 56.52 0.40 -4.60 16 21 H -0.28 -5.16 7.11 56.52 0.40 -4.75 16 22 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 23 C -0.23 -5.30 9.73 -39.27 -0.38 -5.68 16 24 C -0.06 -1.24 7.23 -39.61 -0.29 -1.53 16 25 C 0.10 1.41 5.23 -3.48 -0.02 1.39 16 26 C -0.13 -1.61 4.65 -26.39 -0.12 -1.73 16 27 H 0.07 0.62 6.31 -51.93 -0.33 0.29 16 28 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.71 6.38 -51.93 -0.33 0.38 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.73 6.60 -51.93 -0.34 0.39 16 33 H 0.37 2.24 9.05 45.56 0.41 2.66 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.07 0.92 6.43 -51.93 -0.33 0.58 16 36 H 0.08 0.92 7.79 -51.93 -0.40 0.51 16 37 H 0.09 1.44 7.03 -51.93 -0.37 1.08 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.12 3.12 6.16 -52.48 -0.32 2.80 16 41 H 0.29 6.28 8.29 -40.82 -0.34 5.95 16 42 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 43 H 0.10 1.74 6.58 -52.49 -0.35 1.40 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.12 1.90 4.21 -51.93 -0.22 1.68 16 46 H 0.07 0.98 6.64 -51.92 -0.34 0.64 16 47 H 0.08 0.79 6.26 -51.93 -0.33 0.46 16 LS Contribution 361.84 15.07 5.45 5.45 Total: -1.00 -28.86 361.84 -8.99 -37.85 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -6.18 Total: 11.04 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: -2.97 Total: -17.83 kcal Atomic # 7 Polarization: -29.38 SS G_CDS: 0.09 Total: -29.28 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.35 Total: -19.64 kcal Atomic # 14 Polarization: 17.44 SS G_CDS: -5.03 Total: 12.41 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -28.86 -8.99 -37.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827787576.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.434 kcal (2) G-P(sol) polarization free energy of solvation -28.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds