Wall clock time and date at job start Tue Mar 31 2020 13:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47462 * 2 1 4 4 O 1.42904 * 109.47494 * 240.00109 * 2 1 3 5 5 C 1.52999 * 109.47282 * 119.99928 * 2 1 3 6 6 C 1.53043 * 109.46223 * 184.99893 * 5 2 1 7 7 C 1.53195 * 109.31152 * 181.37449 * 6 5 2 8 8 N 1.46930 * 108.77467 * 305.36253 * 7 6 5 9 9 C 1.34773 * 120.62977 * 233.63201 * 8 7 6 10 10 O 1.21606 * 120.00188 * 355.43738 * 9 8 7 11 11 C 1.47442 * 119.99686 * 175.43494 * 9 8 7 12 12 C 1.39215 * 120.27999 * 54.92309 * 11 9 8 13 13 C 1.38220 * 120.08998 * 179.97438 * 12 11 9 14 14 C 1.38828 * 120.67536 * 0.02562 * 13 12 11 15 15 C 1.37588 * 120.57241 * 359.97438 * 14 13 12 16 16 C 1.40709 * 119.87944 * 359.74127 * 15 14 13 17 17 C 1.40891 * 120.32734 * 180.25462 * 16 15 14 18 18 H 1.08003 * 119.99599 * 152.91925 * 17 16 15 19 19 C 1.40264 * 120.00262 * 332.92356 * 17 16 15 20 20 N 1.30625 * 120.00274 * 159.67635 * 19 17 16 21 21 Si 1.86804 * 120.00074 * 339.67529 * 19 17 16 22 22 H 1.48503 * 109.46806 * 94.07232 * 21 19 17 23 23 H 1.48494 * 109.47345 * 214.07709 * 21 19 17 24 24 H 1.48498 * 109.46739 * 334.07490 * 21 19 17 25 25 C 1.46925 * 118.73826 * 53.61180 * 8 7 6 26 26 C 1.53036 * 109.45182 * 305.06296 * 5 2 1 27 27 H 1.09001 * 109.47048 * 299.99872 * 1 2 3 28 28 H 1.09003 * 109.47249 * 59.99880 * 1 2 3 29 29 H 1.09004 * 109.47568 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47447 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46986 * 300.00281 * 3 2 1 32 32 H 1.09001 * 109.46884 * 60.00028 * 3 2 1 33 33 H 0.96708 * 113.99662 * 300.00383 * 4 2 1 34 34 H 1.09006 * 109.45698 * 65.02935 * 5 2 1 35 35 H 1.09004 * 109.49479 * 61.42172 * 6 5 2 36 36 H 1.08998 * 109.52331 * 301.33860 * 6 5 2 37 37 H 1.08993 * 109.58894 * 65.15678 * 7 6 5 38 38 H 1.09005 * 109.58223 * 185.58092 * 7 6 5 39 39 H 1.08006 * 119.95889 * 359.97438 * 12 11 9 40 40 H 1.08006 * 119.66009 * 179.97438 * 13 12 11 41 41 H 1.08004 * 119.71110 * 179.97438 * 14 13 12 42 42 H 1.08000 * 120.06334 * 179.97438 * 15 14 13 43 43 H 0.97007 * 120.00069 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.58803 * 186.60035 * 25 8 7 45 45 H 1.08997 * 109.58460 * 66.17416 * 25 8 7 46 46 H 1.09000 * 109.49775 * 298.57436 * 26 5 2 47 47 H 1.08998 * 109.49663 * 58.66358 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5652 -0.6131 1.3134 7 6 4.0750 -1.3654 2.5467 8 7 3.3828 -0.8487 3.7354 9 6 4.0822 -0.4066 4.7992 10 8 5.2938 -0.5093 4.8157 11 6 3.3783 0.2016 5.9431 12 6 2.3579 -0.4915 6.5885 13 6 1.7009 0.0823 7.6607 14 6 2.0465 1.3507 8.1068 15 6 3.0507 2.0602 7.4893 16 6 3.7392 1.4964 6.3993 17 6 4.7727 2.2123 5.7634 18 1 5.5669 1.6812 5.2599 19 6 4.7701 3.6148 5.7843 20 7 5.8767 4.2734 5.5652 21 14 3.1841 4.5410 6.1255 22 1 3.0950 4.8528 7.5747 23 1 3.1710 5.8045 5.3455 24 1 2.0255 3.7017 5.7276 25 6 1.9138 -0.8228 3.7420 26 6 1.4283 -0.0767 2.4952 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.7210 -1.5953 -1.2329 34 1 1.7519 -1.7716 1.2051 35 1 3.8529 0.4360 1.3825 36 1 3.9996 -1.0512 0.4148 37 1 3.8678 -2.4298 2.4370 38 1 5.1486 -1.2090 2.6522 39 1 2.0792 -1.4789 6.2509 40 1 0.9100 -0.4615 8.1561 41 1 1.5226 1.7843 8.9458 42 1 3.3126 3.0465 7.8428 43 1 5.8748 5.2434 5.5793 44 1 1.5614 -0.3086 4.6360 45 1 1.5304 -1.8430 3.7296 46 1 1.7361 0.9673 2.5531 47 1 0.3413 -0.1333 2.4377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827829508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:02 Heat of formation + Delta-G solvation = -75.842864 kcal Electronic energy + Delta-G solvation = -28063.885308 eV Core-core repulsion = 24403.676794 eV Total energy + Delta-G solvation = -3660.208513 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.12698 -38.80594 -37.19577 -36.00442 -33.82472 -33.24952 -31.59488 -30.58617 -30.23786 -29.66370 -27.49505 -25.75454 -24.89206 -23.03811 -22.53823 -21.44864 -20.79015 -19.58643 -18.49373 -17.46626 -16.97487 -16.49765 -15.65737 -15.27314 -15.14904 -14.85626 -14.58943 -14.27795 -14.17730 -13.92028 -13.56779 -13.39743 -12.88717 -12.71192 -12.63912 -12.35201 -12.15947 -12.10600 -12.08158 -11.97919 -11.84100 -11.65538 -11.53189 -10.97231 -10.92950 -10.88749 -10.78894 -10.48595 -10.41691 -10.21419 -10.09432 -9.83865 -9.72926 -9.23584 -8.73801 -8.06863 -7.76352 -7.74315 -7.08476 -4.59477 2.25105 2.57306 3.01417 3.10814 3.20978 3.56763 3.80541 3.86659 4.11845 4.37594 4.57888 4.67782 4.83605 5.06937 5.11038 5.28672 5.31913 5.36174 5.45469 5.51495 5.62216 5.70086 5.74475 5.77915 5.82833 5.84255 5.91468 5.96383 5.99724 6.04710 6.09892 6.15099 6.19095 6.26495 6.30137 6.40732 6.52887 6.56451 6.75783 7.04201 7.08950 7.24768 7.43788 7.56788 7.57716 7.74819 7.98413 8.12525 8.31583 8.57036 8.71972 9.13837 9.91088 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.004886 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.557867 B = 5729.656524 C = 6238.337690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.132 3.868 3 C -0.144 4.144 4 O -0.560 6.560 5 C -0.107 4.107 6 C -0.126 4.126 7 C 0.114 3.886 8 N -0.617 5.617 9 C 0.588 3.412 10 O -0.544 6.544 11 C -0.245 4.245 12 C -0.045 4.045 13 C -0.258 4.258 14 C -0.062 4.062 15 C -0.238 4.238 16 C 0.124 3.876 17 C -0.428 4.428 18 H 0.110 0.890 19 C 0.084 3.916 20 N -0.784 5.784 21 Si 0.912 3.088 22 H -0.267 1.267 23 H -0.289 1.289 24 H -0.243 1.243 25 C 0.106 3.894 26 C -0.134 4.134 27 H 0.071 0.929 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.074 0.926 33 H 0.371 0.629 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.104 0.896 43 H 0.289 0.711 44 H 0.103 0.897 45 H 0.056 0.944 46 H 0.075 0.925 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.828 -6.555 -8.912 16.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.091 3.909 3 C -0.201 4.201 4 O -0.366 6.366 5 C -0.126 4.126 6 C -0.165 4.165 7 C -0.009 4.009 8 N -0.352 5.352 9 C 0.381 3.619 10 O -0.422 6.422 11 C -0.250 4.250 12 C -0.064 4.064 13 C -0.277 4.277 14 C -0.081 4.081 15 C -0.257 4.257 16 C 0.120 3.880 17 C -0.454 4.454 18 H 0.128 0.872 19 C -0.139 4.139 20 N -0.406 5.406 21 Si 0.738 3.262 22 H -0.193 1.193 23 H -0.216 1.216 24 H -0.166 1.166 25 C -0.018 4.018 26 C -0.172 4.172 27 H 0.090 0.910 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.092 0.908 33 H 0.218 0.782 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.121 0.879 43 H 0.099 0.901 44 H 0.121 0.879 45 H 0.074 0.926 46 H 0.093 0.907 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.665 -5.795 -9.069 15.152 hybrid contribution -0.927 -0.021 0.302 0.975 sum -11.592 -5.816 -8.767 15.655 Atomic orbital electron populations 1.22557 0.96084 1.02218 1.02877 1.21211 0.92175 0.93154 0.84331 1.21871 1.02577 0.93422 1.02241 1.86569 1.77354 1.28550 1.44077 1.21778 0.96451 0.99541 0.94793 1.21969 0.94587 1.02126 0.97768 1.21436 0.98781 0.96300 0.84335 1.48035 1.06280 1.64850 1.16045 1.18417 0.86497 0.75170 0.81862 1.90675 1.14479 1.56192 1.80810 1.19293 1.03973 0.99983 1.01701 1.20664 0.93620 0.96981 0.95092 1.20232 1.06362 0.97813 1.03340 1.20692 0.95594 0.94446 0.97325 1.21033 1.02992 1.01074 1.00627 1.17383 0.90091 0.90574 0.89979 1.19915 1.06709 0.90958 1.27846 0.87235 1.26387 0.97912 0.98405 0.91153 1.69638 1.28169 1.10256 1.32489 0.86341 0.83056 0.78086 0.78708 1.19313 1.21643 1.16623 1.21827 0.80493 0.99755 0.99688 1.22118 1.00039 1.01052 0.93971 0.90966 0.92134 0.92528 0.91335 0.92401 0.90751 0.78196 0.91240 0.90898 0.90771 0.92730 0.89221 0.88525 0.88578 0.88688 0.87850 0.90069 0.87908 0.92605 0.90682 0.90831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.58 8.33 37.15 0.31 -1.27 16 2 C 0.13 1.38 0.87 -90.62 -0.08 1.30 16 3 C -0.14 -1.70 8.11 37.16 0.30 -1.40 16 4 O -0.56 -5.93 12.49 -35.23 -0.44 -6.37 16 5 C -0.11 -1.19 1.72 -90.58 -0.16 -1.35 16 6 C -0.13 -1.69 4.73 -26.61 -0.13 -1.82 16 7 C 0.11 1.79 6.42 -3.71 -0.02 1.76 16 8 N -0.62 -11.12 2.97 -174.03 -0.52 -11.64 16 9 C 0.59 13.49 6.60 -12.51 -0.08 13.41 16 10 O -0.54 -14.45 14.88 5.27 0.08 -14.37 16 11 C -0.25 -5.71 4.92 -104.37 -0.51 -6.22 16 12 C -0.04 -0.90 7.42 -39.22 -0.29 -1.19 16 13 C -0.26 -5.03 10.03 -39.37 -0.39 -5.43 16 14 C -0.06 -1.28 10.01 -39.60 -0.40 -1.68 16 15 C -0.24 -5.61 7.27 -38.89 -0.28 -5.89 16 16 C 0.12 3.16 5.18 -106.54 -0.55 2.60 16 17 C -0.43 -11.80 8.93 -37.82 -0.34 -12.14 16 18 H 0.11 3.37 6.36 -52.48 -0.33 3.04 16 19 C 0.08 2.17 5.39 -17.30 -0.09 2.08 16 20 N -0.78 -20.71 13.92 55.56 0.77 -19.93 16 21 Si 0.91 20.06 24.53 -169.99 -4.17 15.89 16 22 H -0.27 -5.68 6.60 56.52 0.37 -5.31 16 23 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.24 -5.37 6.96 56.52 0.39 -4.98 16 25 C 0.11 1.54 5.56 -3.71 -0.02 1.52 16 26 C -0.13 -1.66 4.63 -26.61 -0.12 -1.78 16 27 H 0.07 0.63 6.31 -51.93 -0.33 0.30 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.89 6.38 -51.93 -0.33 0.56 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.88 6.60 -51.93 -0.34 0.53 16 33 H 0.37 2.57 9.05 45.56 0.41 2.98 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 1.13 6.43 -51.93 -0.33 0.80 16 36 H 0.07 0.91 7.79 -51.93 -0.40 0.51 16 37 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.61 7.03 -51.93 -0.37 1.24 16 39 H 0.10 1.68 7.40 -52.48 -0.39 1.29 16 40 H 0.10 1.60 8.06 -52.48 -0.42 1.18 16 41 H 0.09 1.69 8.06 -52.48 -0.42 1.26 16 42 H 0.10 2.42 4.48 -52.49 -0.23 2.18 16 43 H 0.29 6.81 8.29 -40.82 -0.34 6.47 16 44 H 0.10 1.67 4.74 -51.93 -0.25 1.42 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.07 1.08 6.64 -51.93 -0.34 0.74 16 47 H 0.07 0.75 6.27 -51.93 -0.33 0.42 16 LS Contribution 354.32 15.07 5.34 5.34 Total: -1.00 -30.53 354.32 -7.92 -38.45 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -6.12 Total: 10.13 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -2.86 Total: -17.50 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.26 Total: -31.57 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.36 Total: -20.74 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.17 Total: 15.89 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.53 -7.92 -38.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827829508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.398 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds