Wall clock time and date at job start Tue Mar 31 2020 13:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53001 * 109.47462 * 2 1 4 4 O 1.42904 * 109.47494 * 240.00109 * 2 1 3 5 5 C 1.52999 * 109.47282 * 119.99928 * 2 1 3 6 6 C 1.53043 * 109.46223 * 184.99893 * 5 2 1 7 7 C 1.53195 * 109.31152 * 181.37449 * 6 5 2 8 8 N 1.46930 * 108.77467 * 305.36253 * 7 6 5 9 9 C 1.34773 * 120.62977 * 233.63201 * 8 7 6 10 10 O 1.21606 * 120.00188 * 355.43738 * 9 8 7 11 11 C 1.47442 * 119.99686 * 175.43494 * 9 8 7 12 12 C 1.39215 * 120.27999 * 54.92309 * 11 9 8 13 13 C 1.38220 * 120.08998 * 179.97438 * 12 11 9 14 14 C 1.38828 * 120.67536 * 0.02562 * 13 12 11 15 15 C 1.37588 * 120.57241 * 359.97438 * 14 13 12 16 16 C 1.40709 * 119.87944 * 359.74127 * 15 14 13 17 17 C 1.40891 * 120.32734 * 180.25462 * 16 15 14 18 18 H 1.08003 * 119.99599 * 152.91925 * 17 16 15 19 19 C 1.40264 * 120.00262 * 332.92356 * 17 16 15 20 20 N 1.30625 * 120.00274 * 159.67635 * 19 17 16 21 21 Si 1.86804 * 120.00074 * 339.67529 * 19 17 16 22 22 H 1.48503 * 109.46806 * 94.07232 * 21 19 17 23 23 H 1.48494 * 109.47345 * 214.07709 * 21 19 17 24 24 H 1.48498 * 109.46739 * 334.07490 * 21 19 17 25 25 C 1.46925 * 118.73826 * 53.61180 * 8 7 6 26 26 C 1.53036 * 109.45182 * 305.06296 * 5 2 1 27 27 H 1.09001 * 109.47048 * 299.99872 * 1 2 3 28 28 H 1.09003 * 109.47249 * 59.99880 * 1 2 3 29 29 H 1.09004 * 109.47568 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47447 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.46986 * 300.00281 * 3 2 1 32 32 H 1.09001 * 109.46884 * 60.00028 * 3 2 1 33 33 H 0.96708 * 113.99662 * 300.00383 * 4 2 1 34 34 H 1.09006 * 109.45698 * 65.02935 * 5 2 1 35 35 H 1.09004 * 109.49479 * 61.42172 * 6 5 2 36 36 H 1.08998 * 109.52331 * 301.33860 * 6 5 2 37 37 H 1.08993 * 109.58894 * 65.15678 * 7 6 5 38 38 H 1.09005 * 109.58223 * 185.58092 * 7 6 5 39 39 H 1.08006 * 119.95889 * 359.97438 * 12 11 9 40 40 H 1.08006 * 119.66009 * 179.97438 * 13 12 11 41 41 H 1.08004 * 119.71110 * 179.97438 * 14 13 12 42 42 H 1.08000 * 120.06334 * 179.97438 * 15 14 13 43 43 H 0.97007 * 120.00069 * 179.97438 * 20 19 17 44 44 H 1.08995 * 109.58803 * 186.60035 * 25 8 7 45 45 H 1.08997 * 109.58460 * 66.17416 * 25 8 7 46 46 H 1.09000 * 109.49775 * 298.57436 * 26 5 2 47 47 H 1.08998 * 109.49663 * 58.66358 * 26 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 6 3.5652 -0.6131 1.3134 7 6 4.0750 -1.3654 2.5467 8 7 3.3828 -0.8487 3.7354 9 6 4.0822 -0.4066 4.7992 10 8 5.2938 -0.5093 4.8157 11 6 3.3783 0.2016 5.9431 12 6 2.3579 -0.4915 6.5885 13 6 1.7009 0.0823 7.6607 14 6 2.0465 1.3507 8.1068 15 6 3.0507 2.0602 7.4893 16 6 3.7392 1.4964 6.3993 17 6 4.7727 2.2123 5.7634 18 1 5.5669 1.6812 5.2599 19 6 4.7701 3.6148 5.7843 20 7 5.8767 4.2734 5.5652 21 14 3.1841 4.5410 6.1255 22 1 3.0950 4.8528 7.5747 23 1 3.1710 5.8045 5.3455 24 1 2.0255 3.7017 5.7276 25 6 1.9138 -0.8228 3.7420 26 6 1.4283 -0.0767 2.4952 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.7210 -1.5953 -1.2329 34 1 1.7519 -1.7716 1.2051 35 1 3.8529 0.4360 1.3825 36 1 3.9996 -1.0512 0.4148 37 1 3.8678 -2.4298 2.4370 38 1 5.1486 -1.2090 2.6522 39 1 2.0792 -1.4789 6.2509 40 1 0.9100 -0.4615 8.1561 41 1 1.5226 1.7843 8.9458 42 1 3.3126 3.0465 7.8428 43 1 5.8748 5.2434 5.5793 44 1 1.5614 -0.3086 4.6360 45 1 1.5304 -1.8430 3.7296 46 1 1.7361 0.9673 2.5531 47 1 0.3413 -0.1333 2.4377 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000827829508.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:00:01 Heat of formation + Delta-G solvation = -97.183499 kcal Electronic energy + Delta-G solvation = -28064.810707 eV Core-core repulsion = 24403.676794 eV Total energy + Delta-G solvation = -3661.133913 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.46801 -40.11110 -38.81416 -37.36848 -35.66259 -34.39007 -32.89672 -32.40271 -31.35799 -31.15313 -28.33194 -27.43656 -26.30829 -24.23770 -24.02627 -23.07010 -22.14356 -20.74659 -19.87346 -19.31180 -18.33347 -17.72247 -17.25756 -16.81784 -16.40359 -16.05692 -15.82548 -15.68613 -15.44528 -15.42330 -14.92728 -14.68644 -14.45603 -14.27371 -13.90597 -13.74157 -13.63713 -13.43283 -13.23153 -13.13931 -13.02432 -12.75149 -12.73268 -12.55630 -12.48546 -12.19235 -11.99252 -11.95338 -11.76455 -11.63244 -11.48619 -11.20897 -11.02688 -10.65390 -10.50413 -9.59054 -9.53336 -9.40410 -8.98141 -6.57088 0.51279 0.82389 1.21224 1.36586 1.45505 1.91087 2.06509 2.29221 2.55307 3.34246 3.46358 3.64341 3.69445 3.89806 3.99225 4.14391 4.22290 4.24654 4.30187 4.33781 4.38190 4.42793 4.57652 4.71999 4.73226 4.75905 4.83576 4.86663 4.87354 4.90039 4.94665 5.00182 5.04540 5.08232 5.11496 5.20009 5.22232 5.25405 5.41907 5.46932 5.53935 5.73433 5.74552 5.85630 5.96849 6.18757 6.36006 6.52118 6.73506 6.75572 6.98020 7.43349 8.09436 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013023 B = 0.004886 C = 0.004487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.557867 B = 5729.656524 C = 6238.337690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.138 3.862 3 C -0.149 4.149 4 O -0.574 6.574 5 C -0.097 4.097 6 C -0.119 4.119 7 C 0.111 3.889 8 N -0.610 5.610 9 C 0.576 3.424 10 O -0.601 6.601 11 C -0.259 4.259 12 C -0.042 4.042 13 C -0.230 4.230 14 C -0.061 4.061 15 C -0.257 4.257 16 C 0.105 3.895 17 C -0.476 4.476 18 H 0.052 0.948 19 C 0.044 3.956 20 N -0.838 5.838 21 Si 0.973 3.027 22 H -0.250 1.250 23 H -0.277 1.277 24 H -0.244 1.244 25 C 0.098 3.902 26 C -0.130 4.130 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.078 0.922 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.390 0.610 34 H 0.100 0.900 35 H 0.038 0.962 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.052 0.948 39 H 0.132 0.868 40 H 0.144 0.856 41 H 0.135 0.865 42 H 0.100 0.900 43 H 0.297 0.703 44 H 0.089 0.911 45 H 0.095 0.905 46 H 0.045 0.955 47 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.291 -8.823 -8.415 21.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.098 3.902 3 C -0.206 4.206 4 O -0.382 6.382 5 C -0.116 4.116 6 C -0.157 4.157 7 C -0.011 4.011 8 N -0.342 5.342 9 C 0.368 3.632 10 O -0.483 6.483 11 C -0.263 4.263 12 C -0.060 4.060 13 C -0.249 4.249 14 C -0.079 4.079 15 C -0.276 4.276 16 C 0.102 3.898 17 C -0.504 4.504 18 H 0.070 0.930 19 C -0.173 4.173 20 N -0.462 5.462 21 Si 0.795 3.205 22 H -0.175 1.175 23 H -0.203 1.203 24 H -0.167 1.167 25 C -0.023 4.023 26 C -0.168 4.168 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.239 0.761 34 H 0.119 0.881 35 H 0.057 0.943 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.071 0.929 39 H 0.150 0.850 40 H 0.162 0.838 41 H 0.153 0.847 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.064 0.936 47 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.179 -8.096 -8.598 20.031 hybrid contribution 0.668 0.407 0.167 0.799 sum -15.511 -7.689 -8.432 19.256 Atomic orbital electron populations 1.22500 0.93946 1.03737 1.03004 1.21075 0.93546 0.91702 0.83927 1.21901 1.01155 0.95347 1.02226 1.86544 1.77777 1.30129 1.43793 1.21748 0.93896 1.01307 0.94658 1.21884 0.97057 0.99729 0.97002 1.21598 0.96799 0.98430 0.84311 1.48099 1.08041 1.63009 1.15077 1.18648 0.86011 0.75286 0.83265 1.90640 1.16880 1.58630 1.82134 1.19631 1.04802 0.99554 1.02314 1.21049 0.92125 0.98113 0.94716 1.20857 1.05568 0.97009 1.01465 1.21176 0.94349 0.94678 0.97678 1.21144 1.04232 1.01653 1.00525 1.17608 0.90000 0.91721 0.90505 1.19683 1.07591 0.92088 1.31081 0.92987 1.27175 1.01008 0.98466 0.90629 1.69684 1.30080 1.10923 1.35545 0.85422 0.78628 0.76960 0.79523 1.17504 1.20333 1.16693 1.22146 0.77806 1.02154 1.00222 1.22110 1.02114 0.99093 0.93453 0.90756 0.92171 0.90257 0.93648 0.91940 0.91250 0.76073 0.88138 0.94307 0.89415 0.89256 0.92935 0.85003 0.83842 0.84694 0.88203 0.89262 0.89264 0.88646 0.93639 0.87287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.37 8.33 71.98 0.60 -1.77 16 2 C 0.14 2.56 0.87 -10.80 -0.01 2.55 16 3 C -0.15 -3.54 8.11 71.98 0.58 -2.96 16 4 O -0.57 -10.63 12.49 -148.98 -1.86 -12.49 16 5 C -0.10 -1.91 1.72 -10.77 -0.02 -1.93 16 6 C -0.12 -3.18 4.73 30.67 0.15 -3.04 16 7 C 0.11 3.51 6.42 86.36 0.55 4.06 16 8 N -0.61 -22.01 2.97 -822.77 -2.45 -24.46 16 9 C 0.58 27.68 6.60 86.67 0.57 28.25 16 10 O -0.60 -34.85 14.88 -4.05 -0.06 -34.91 16 11 C -0.26 -12.17 4.92 -19.70 -0.10 -12.27 16 12 C -0.04 -1.53 7.42 22.50 0.17 -1.36 16 13 C -0.23 -7.70 10.03 22.41 0.22 -7.47 16 14 C -0.06 -2.25 10.01 22.26 0.22 -2.03 16 15 C -0.26 -11.85 7.27 22.72 0.17 -11.68 16 16 C 0.11 5.55 5.18 -21.11 -0.11 5.44 16 17 C -0.48 -28.70 8.93 23.41 0.21 -28.49 16 18 H 0.05 3.63 6.36 -2.91 -0.02 3.61 16 19 C 0.04 2.42 5.39 85.37 0.46 2.89 16 20 N -0.84 -48.10 13.92 21.88 0.30 -47.80 16 21 Si 0.97 42.55 24.53 68.60 1.68 44.23 16 22 H -0.25 -10.12 6.60 99.48 0.66 -9.46 16 23 H -0.28 -11.34 7.11 99.48 0.71 -10.63 16 24 H -0.24 -10.48 6.96 99.48 0.69 -9.79 16 25 C 0.10 2.58 5.56 86.36 0.48 3.06 16 26 C -0.13 -2.88 4.63 30.67 0.14 -2.74 16 27 H 0.07 0.99 6.31 -2.39 -0.02 0.97 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.04 1.26 6.38 -2.39 -0.02 1.24 16 31 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.07 1.68 6.60 -2.39 -0.02 1.66 16 33 H 0.39 3.87 9.05 -74.05 -0.67 3.20 16 34 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 35 H 0.04 1.30 6.43 -2.38 -0.02 1.29 16 36 H 0.09 2.11 7.79 -2.39 -0.02 2.09 16 37 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.05 2.05 7.03 -2.38 -0.02 2.03 16 39 H 0.13 3.91 7.40 -2.91 -0.02 3.89 16 40 H 0.14 3.59 8.06 -2.91 -0.02 3.57 16 41 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 42 H 0.10 4.62 4.48 -2.91 -0.01 4.60 16 43 H 0.30 15.07 8.29 -92.70 -0.77 14.30 16 44 H 0.09 2.62 4.74 -2.39 -0.01 2.60 16 45 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.04 1.30 6.64 -2.39 -0.02 1.28 16 47 H 0.11 1.70 6.27 -2.39 -0.01 1.68 16 Total: -1.00 -76.60 354.32 2.17 -74.43 By element: Atomic # 1 Polarization: 30.20 SS G_CDS: 0.26 Total: 30.47 kcal Atomic # 6 Polarization: -33.76 SS G_CDS: 4.29 Total: -29.47 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -2.14 Total: -72.25 kcal Atomic # 8 Polarization: -45.48 SS G_CDS: -1.92 Total: -47.40 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 1.68 Total: 44.23 kcal Total: -76.60 2.17 -74.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827829508.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.757 kcal (2) G-P(sol) polarization free energy of solvation -76.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds