Wall clock time and date at job start Tue Mar 31 2020 13:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47730 * 2 1 4 4 C 1.52993 * 109.47433 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47222 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47174 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46856 * 179.97438 * 6 5 4 8 8 H 1.08990 * 109.46943 * 55.00156 * 7 6 5 9 9 C 1.53003 * 109.46775 * 175.00278 * 7 6 5 10 10 N 1.46500 * 109.47225 * 294.99960 * 7 6 5 11 11 S 1.65600 * 119.99991 * 145.00240 * 10 7 6 12 12 O 1.42097 * 104.27312 * 308.92918 * 11 10 7 13 13 O 1.42101 * 104.27829 * 181.07310 * 11 10 7 14 14 C 1.81400 * 104.45011 * 64.99934 * 11 10 7 15 15 C 1.52997 * 109.46973 * 174.34581 * 14 11 10 16 16 C 1.50699 * 115.55146 * 295.22049 * 15 14 11 17 17 H 1.08006 * 119.99664 * 95.16929 * 16 15 14 18 18 C 1.37880 * 120.00083 * 274.88923 * 16 15 14 19 19 N 1.31510 * 120.00053 * 6.45717 * 18 16 15 20 20 Si 1.86797 * 119.99885 * 186.45298 * 18 16 15 21 21 H 1.48504 * 109.47184 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47250 * 120.00076 * 20 18 16 23 23 H 1.48493 * 109.47159 * 240.00300 * 20 18 16 24 24 C 1.52999 * 117.49675 * 80.89766 * 15 14 11 25 25 C 1.53006 * 117.49729 * 149.55238 * 15 14 11 26 26 H 1.08999 * 109.47186 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46671 * 299.99904 * 1 2 3 28 28 H 1.09001 * 109.46703 * 59.99826 * 1 2 3 29 29 H 1.09005 * 109.47217 * 239.99948 * 2 1 3 30 30 H 1.08997 * 109.47011 * 120.00579 * 2 1 3 31 31 H 1.09005 * 109.46813 * 59.99700 * 3 2 1 32 32 H 1.09008 * 109.46938 * 300.00157 * 3 2 1 33 33 H 1.08996 * 109.47389 * 59.99933 * 4 3 2 34 34 H 1.09003 * 109.47368 * 299.99580 * 4 3 2 35 35 H 1.08996 * 109.47178 * 59.99577 * 5 4 3 36 36 H 1.09001 * 109.47089 * 299.99610 * 5 4 3 37 37 H 1.09006 * 109.46820 * 60.00080 * 6 5 4 38 38 H 1.08995 * 109.47221 * 299.99516 * 6 5 4 39 39 H 1.08998 * 109.47132 * 299.99843 * 9 7 6 40 40 H 1.09002 * 109.47326 * 59.99770 * 9 7 6 41 41 H 1.08997 * 109.47037 * 179.97438 * 9 7 6 42 42 H 0.97006 * 119.99755 * 325.00242 * 10 7 6 43 43 H 1.09004 * 109.47085 * 54.34573 * 14 11 10 44 44 H 1.08998 * 109.46945 * 294.35149 * 14 11 10 45 45 H 0.96994 * 119.99878 * 185.02501 * 19 18 16 46 46 H 1.09004 * 117.49807 * 215.00208 * 24 15 14 47 47 H 1.09000 * 117.50005 * 0.02562 * 24 15 14 48 48 H 1.09004 * 117.49857 * 359.97438 * 25 15 14 49 49 H 1.08995 * 117.49830 * 144.97148 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0802 2.8848 0.0000 6 6 5.6102 2.8847 0.0000 7 6 6.1203 4.3272 0.0000 8 1 5.6857 4.8662 0.8418 9 6 7.6451 4.3290 0.1257 10 7 5.7327 4.9822 -1.2518 11 16 5.3361 6.5900 -1.2568 12 8 4.3723 6.7163 -0.2203 13 8 4.9973 6.8633 -2.6095 14 6 6.8744 7.4371 -0.8022 15 6 6.6741 8.9502 -0.9088 16 6 6.4068 9.4743 -2.2962 17 1 5.3909 9.6288 -2.6286 18 6 7.4593 9.7622 -3.1390 19 7 8.6888 9.4614 -2.7821 20 14 7.1389 10.5793 -4.7880 21 1 5.6812 10.8125 -4.9499 22 1 7.8567 11.8780 -4.8447 23 1 7.6239 9.6975 -5.8799 24 6 5.9801 9.6548 0.2586 25 6 7.4836 9.8384 0.0382 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9331 0.9286 -0.8908 34 1 3.9338 0.9284 0.8892 35 1 3.7173 3.3981 0.8904 36 1 3.7166 3.3992 -0.8896 37 1 5.9735 2.3712 -0.8903 38 1 5.9735 2.3706 0.8898 39 1 7.9335 3.8416 1.0570 40 1 8.0797 3.7899 -0.7162 41 1 8.0085 5.3566 0.1252 42 1 5.7085 4.4741 -2.0778 43 1 7.6726 7.1279 -1.4770 44 1 7.1433 7.1774 0.2217 45 1 9.4352 9.7288 -3.3409 46 1 5.3300 10.4975 0.0231 47 1 5.6666 9.0405 1.1027 48 1 8.1586 9.3448 0.7374 49 1 7.8232 10.8016 -0.3425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829877092.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:24 Heat of formation + Delta-G solvation = -93.519261 kcal Electronic energy + Delta-G solvation = -25569.283210 eV Core-core repulsion = 22043.752142 eV Total energy + Delta-G solvation = -3525.531068 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -37.72878 -36.75076 -36.22467 -35.88658 -35.04031 -32.80248 -32.01271 -30.03312 -28.55386 -27.88635 -25.43856 -24.49892 -21.69781 -21.22453 -21.08187 -20.80502 -19.73335 -18.70567 -17.00676 -16.45674 -16.14443 -15.78152 -15.05904 -14.77954 -14.53640 -14.35503 -14.18319 -13.90960 -13.77342 -13.53957 -13.25296 -12.87681 -12.74510 -12.40259 -11.95439 -11.86634 -11.76409 -11.64304 -11.61765 -11.28805 -11.21548 -11.14587 -11.06894 -11.00329 -10.92265 -10.80070 -10.78288 -10.54935 -10.53161 -10.45650 -10.36395 -10.07621 -9.72426 -9.16645 -8.93029 -8.53299 -8.09015 -6.12248 -4.20788 1.13757 3.29999 3.38314 3.46372 3.48020 4.40435 4.43098 4.60234 4.71964 4.82725 4.87261 4.95460 4.99958 5.08956 5.15931 5.18835 5.21479 5.31048 5.41019 5.44325 5.54466 5.57152 5.64813 5.68105 5.71533 5.77344 5.81987 5.88566 5.92717 5.94507 5.96737 6.01000 6.14645 6.20977 6.23376 6.30733 6.35674 6.38533 6.45898 6.61948 6.70029 6.98593 7.24229 7.37504 7.38976 7.84202 8.22257 8.86018 9.49884 10.96348 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019533 B = 0.003095 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.103426 B = 9043.824011 C = 9416.563491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.124 4.124 4 C -0.119 4.119 5 C -0.124 4.124 6 C -0.119 4.119 7 C 0.144 3.856 8 H 0.089 0.911 9 C -0.180 4.180 10 N -1.125 6.125 11 S 2.604 3.396 12 O -0.979 6.979 13 O -0.947 6.947 14 C -0.555 4.555 15 C 0.042 3.958 16 C -0.504 4.504 17 H 0.071 0.929 18 C 0.078 3.922 19 N -0.877 5.877 20 Si 0.891 3.109 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.282 1.282 24 C -0.214 4.214 25 C -0.139 4.139 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.410 0.590 43 H 0.135 0.865 44 H 0.097 0.903 45 H 0.261 0.739 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.066 0.934 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.266 -16.743 7.284 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.161 4.161 4 C -0.156 4.156 5 C -0.162 4.162 6 C -0.158 4.158 7 C 0.036 3.964 8 H 0.107 0.893 9 C -0.239 4.239 10 N -0.881 5.881 11 S 2.701 3.299 12 O -0.969 6.969 13 O -0.937 6.937 14 C -0.688 4.688 15 C 0.040 3.960 16 C -0.542 4.542 17 H 0.089 0.911 18 C -0.126 4.126 19 N -0.513 5.513 20 Si 0.718 3.282 21 H -0.192 1.192 22 H -0.210 1.210 23 H -0.207 1.207 24 C -0.252 4.252 25 C -0.178 4.178 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.243 0.757 43 H 0.153 0.847 44 H 0.116 0.884 45 H 0.071 0.929 46 H 0.105 0.895 47 H 0.093 0.907 48 H 0.084 0.916 49 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.965 -16.377 7.154 18.841 hybrid contribution 0.867 0.178 -1.029 1.357 sum -5.099 -16.199 6.125 18.053 Atomic orbital electron populations 1.21788 0.96063 1.01357 1.01924 1.21539 0.95749 0.97180 1.01748 1.21654 0.95664 0.96437 1.02365 1.21608 0.95248 0.97051 1.01697 1.21634 0.95052 0.96341 1.03136 1.21835 0.95997 0.95423 1.02507 1.20776 0.94386 0.94647 0.86566 0.89323 1.22476 0.95790 1.03364 1.02299 1.56028 1.87112 1.29692 1.15297 1.05158 0.77565 0.72544 0.74604 1.93493 1.57757 1.85430 1.60213 1.93563 1.82769 1.82617 1.34767 1.30079 1.20167 1.09904 1.08620 1.18327 1.00828 0.85237 0.91632 1.20599 0.93682 1.44725 0.95158 0.91140 1.24940 0.95009 0.94685 0.97992 1.70019 0.98292 1.44111 1.38888 0.86530 0.78973 0.78902 0.83758 1.19203 1.20967 1.20748 1.23248 0.96459 1.04404 1.01045 1.22527 0.91191 1.02117 1.01984 0.93000 0.92755 0.92716 0.92210 0.92242 0.91933 0.91904 0.92204 0.92238 0.91582 0.91461 0.91447 0.90980 0.91673 0.91849 0.91490 0.75662 0.84732 0.88408 0.92927 0.89486 0.90682 0.91552 0.89544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -0.97 5.93 -26.73 -0.16 -1.13 16 3 C -0.12 -1.11 5.21 -26.74 -0.14 -1.25 16 4 C -0.12 -1.06 5.21 -26.73 -0.14 -1.20 16 5 C -0.12 -1.34 5.10 -26.73 -0.14 -1.48 16 6 C -0.12 -1.17 4.81 -26.73 -0.13 -1.30 16 7 C 0.14 1.77 2.81 -67.93 -0.19 1.58 16 8 H 0.09 1.15 7.48 -51.93 -0.39 0.76 16 9 C -0.18 -2.00 9.48 37.16 0.35 -1.65 16 10 N -1.12 -16.64 4.81 -4.89 -0.02 -16.66 16 11 S 2.60 52.29 5.33 -107.50 -0.57 51.72 16 12 O -0.98 -21.12 17.39 -57.54 -1.00 -22.12 16 13 O -0.95 -22.75 17.10 -57.54 -0.98 -23.73 16 14 C -0.55 -11.53 4.88 37.16 0.18 -11.35 16 15 C 0.04 1.02 1.34 -155.66 -0.21 0.81 16 16 C -0.50 -13.85 7.66 -34.44 -0.26 -14.11 16 17 H 0.07 2.00 7.82 -52.48 -0.41 1.59 16 18 C 0.08 2.13 5.39 -17.82 -0.10 2.04 16 19 N -0.88 -24.15 12.93 55.43 0.72 -23.43 16 20 Si 0.89 21.57 29.55 -169.99 -5.02 16.54 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.21 -4.69 9.96 -26.70 -0.27 -4.96 16 25 C -0.14 -3.15 9.44 -26.69 -0.25 -3.41 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.07 0.83 7.75 -51.93 -0.40 0.42 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.83 5.97 -51.93 -0.31 0.52 16 42 H 0.41 5.38 8.80 -34.47 -0.30 5.08 16 43 H 0.13 2.90 8.14 -51.92 -0.42 2.48 16 44 H 0.10 1.72 7.11 -51.93 -0.37 1.35 16 45 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 46 H 0.09 1.87 8.14 -51.93 -0.42 1.45 16 47 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 48 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 49 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 LS Contribution 403.50 15.07 6.08 6.08 Total: -1.00 -31.95 403.50 -11.23 -43.19 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: -9.35 Total: 6.57 kcal Atomic # 6 Polarization: -37.08 SS G_CDS: -1.08 Total: -38.16 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.69 Total: -40.09 kcal Atomic # 8 Polarization: -43.87 SS G_CDS: -1.98 Total: -45.85 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 52.29 SS G_CDS: -0.57 Total: 51.72 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -31.95 -11.23 -43.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829877092.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.330 kcal (2) G-P(sol) polarization free energy of solvation -31.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds