Wall clock time and date at job start Tue Mar 31 2020 13:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47730 * 2 1 4 4 C 1.52993 * 109.47433 * 180.02562 * 3 2 1 5 5 C 1.53005 * 109.47222 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47174 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.46856 * 179.97438 * 6 5 4 8 8 H 1.08990 * 109.46943 * 55.00156 * 7 6 5 9 9 C 1.53003 * 109.46775 * 175.00278 * 7 6 5 10 10 N 1.46500 * 109.47225 * 294.99960 * 7 6 5 11 11 S 1.65600 * 119.99991 * 145.00240 * 10 7 6 12 12 O 1.42097 * 104.27312 * 308.92918 * 11 10 7 13 13 O 1.42101 * 104.27829 * 181.07310 * 11 10 7 14 14 C 1.81400 * 104.45011 * 64.99934 * 11 10 7 15 15 C 1.52997 * 109.46973 * 174.34581 * 14 11 10 16 16 C 1.50699 * 115.55146 * 295.22049 * 15 14 11 17 17 H 1.08006 * 119.99664 * 95.16929 * 16 15 14 18 18 C 1.37880 * 120.00083 * 274.88923 * 16 15 14 19 19 N 1.31510 * 120.00053 * 6.45717 * 18 16 15 20 20 Si 1.86797 * 119.99885 * 186.45298 * 18 16 15 21 21 H 1.48504 * 109.47184 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47250 * 120.00076 * 20 18 16 23 23 H 1.48493 * 109.47159 * 240.00300 * 20 18 16 24 24 C 1.52999 * 117.49675 * 80.89766 * 15 14 11 25 25 C 1.53006 * 117.49729 * 149.55238 * 15 14 11 26 26 H 1.08999 * 109.47186 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46671 * 299.99904 * 1 2 3 28 28 H 1.09001 * 109.46703 * 59.99826 * 1 2 3 29 29 H 1.09005 * 109.47217 * 239.99948 * 2 1 3 30 30 H 1.08997 * 109.47011 * 120.00579 * 2 1 3 31 31 H 1.09005 * 109.46813 * 59.99700 * 3 2 1 32 32 H 1.09008 * 109.46938 * 300.00157 * 3 2 1 33 33 H 1.08996 * 109.47389 * 59.99933 * 4 3 2 34 34 H 1.09003 * 109.47368 * 299.99580 * 4 3 2 35 35 H 1.08996 * 109.47178 * 59.99577 * 5 4 3 36 36 H 1.09001 * 109.47089 * 299.99610 * 5 4 3 37 37 H 1.09006 * 109.46820 * 60.00080 * 6 5 4 38 38 H 1.08995 * 109.47221 * 299.99516 * 6 5 4 39 39 H 1.08998 * 109.47132 * 299.99843 * 9 7 6 40 40 H 1.09002 * 109.47326 * 59.99770 * 9 7 6 41 41 H 1.08997 * 109.47037 * 179.97438 * 9 7 6 42 42 H 0.97006 * 119.99755 * 325.00242 * 10 7 6 43 43 H 1.09004 * 109.47085 * 54.34573 * 14 11 10 44 44 H 1.08998 * 109.46945 * 294.35149 * 14 11 10 45 45 H 0.96994 * 119.99878 * 185.02501 * 19 18 16 46 46 H 1.09004 * 117.49807 * 215.00208 * 24 15 14 47 47 H 1.09000 * 117.50005 * 0.02562 * 24 15 14 48 48 H 1.09004 * 117.49857 * 359.97438 * 25 15 14 49 49 H 1.08995 * 117.49830 * 144.97148 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 6 4.0802 2.8848 0.0000 6 6 5.6102 2.8847 0.0000 7 6 6.1203 4.3272 0.0000 8 1 5.6857 4.8662 0.8418 9 6 7.6451 4.3290 0.1257 10 7 5.7327 4.9822 -1.2518 11 16 5.3361 6.5900 -1.2568 12 8 4.3723 6.7163 -0.2203 13 8 4.9973 6.8633 -2.6095 14 6 6.8744 7.4371 -0.8022 15 6 6.6741 8.9502 -0.9088 16 6 6.4068 9.4743 -2.2962 17 1 5.3909 9.6288 -2.6286 18 6 7.4593 9.7622 -3.1390 19 7 8.6888 9.4614 -2.7821 20 14 7.1389 10.5793 -4.7880 21 1 5.6812 10.8125 -4.9499 22 1 7.8567 11.8780 -4.8447 23 1 7.6239 9.6975 -5.8799 24 6 5.9801 9.6548 0.2586 25 6 7.4836 9.8384 0.0382 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9331 0.9286 -0.8908 34 1 3.9338 0.9284 0.8892 35 1 3.7173 3.3981 0.8904 36 1 3.7166 3.3992 -0.8896 37 1 5.9735 2.3712 -0.8903 38 1 5.9735 2.3706 0.8898 39 1 7.9335 3.8416 1.0570 40 1 8.0797 3.7899 -0.7162 41 1 8.0085 5.3566 0.1252 42 1 5.7085 4.4741 -2.0778 43 1 7.6726 7.1279 -1.4770 44 1 7.1433 7.1774 0.2217 45 1 9.4352 9.7288 -3.3409 46 1 5.3300 10.4975 0.0231 47 1 5.6666 9.0405 1.1027 48 1 8.1586 9.3448 0.7374 49 1 7.8232 10.8016 -0.3425 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829877092.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:23 Heat of formation + Delta-G solvation = -112.587712 kcal Electronic energy + Delta-G solvation = -25570.110080 eV Core-core repulsion = 22043.752142 eV Total energy + Delta-G solvation = -3526.357938 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.181 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -38.69054 -38.56707 -37.84423 -36.78419 -36.70396 -34.06984 -33.61635 -31.06259 -29.95999 -28.92076 -27.47247 -25.25734 -23.01222 -22.50108 -21.85207 -21.64471 -21.49824 -20.28614 -18.51674 -18.34303 -17.22938 -16.83824 -16.74145 -16.54141 -15.93642 -15.62216 -15.32967 -14.98430 -14.96798 -14.67354 -14.39332 -13.87683 -13.64975 -13.63830 -13.51012 -13.30091 -13.17229 -12.92031 -12.88003 -12.84376 -12.72792 -12.49812 -12.42624 -12.36980 -12.21835 -12.09424 -11.89589 -11.83798 -11.71640 -11.52292 -11.50096 -11.29768 -11.19296 -10.85200 -10.55834 -10.37179 -9.86775 -8.19201 -6.31535 -0.45683 1.36098 1.40241 1.51656 2.06294 2.40890 2.98766 3.08951 3.35433 3.48870 3.64758 3.99087 4.02289 4.07579 4.13824 4.19781 4.28745 4.29184 4.40961 4.49149 4.50207 4.60277 4.65794 4.68563 4.71118 4.83206 4.89445 4.93455 4.95514 4.96544 5.01019 5.08796 5.16219 5.20191 5.20941 5.23704 5.29943 5.39978 5.43098 5.46859 5.49852 5.56850 5.58269 5.59448 5.74004 6.22790 6.24368 6.74757 7.39986 8.88851 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019533 B = 0.003095 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.103426 B = 9043.824011 C = 9416.563491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.126 4.126 4 C -0.112 4.112 5 C -0.128 4.128 6 C -0.112 4.112 7 C 0.134 3.866 8 H 0.083 0.917 9 C -0.180 4.180 10 N -1.111 6.111 11 S 2.620 3.380 12 O -0.997 6.997 13 O -0.994 6.994 14 C -0.550 4.550 15 C 0.009 3.991 16 C -0.522 4.522 17 H 0.047 0.953 18 C 0.039 3.961 19 N -0.893 5.893 20 Si 0.935 3.065 21 H -0.275 1.275 22 H -0.271 1.271 23 H -0.278 1.278 24 C -0.203 4.203 25 C -0.135 4.135 26 H 0.061 0.939 27 H 0.052 0.948 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.051 0.949 42 H 0.419 0.581 43 H 0.125 0.875 44 H 0.130 0.870 45 H 0.264 0.736 46 H 0.083 0.917 47 H 0.099 0.901 48 H 0.088 0.912 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.551 -18.658 8.420 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.160 4.160 3 C -0.164 4.164 4 C -0.150 4.150 5 C -0.165 4.165 6 C -0.151 4.151 7 C 0.028 3.972 8 H 0.101 0.899 9 C -0.239 4.239 10 N -0.871 5.871 11 S 2.717 3.283 12 O -0.987 6.987 13 O -0.984 6.984 14 C -0.683 4.683 15 C 0.007 3.993 16 C -0.559 4.559 17 H 0.065 0.935 18 C -0.163 4.163 19 N -0.530 5.530 20 Si 0.760 3.240 21 H -0.200 1.200 22 H -0.196 1.196 23 H -0.203 1.203 24 C -0.240 4.240 25 C -0.174 4.174 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.098 0.902 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.255 0.745 43 H 0.143 0.857 44 H 0.148 0.852 45 H 0.073 0.927 46 H 0.101 0.899 47 H 0.117 0.883 48 H 0.107 0.893 49 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.248 -18.284 8.291 20.750 hybrid contribution 0.610 0.730 -1.331 1.636 sum -4.639 -17.553 6.959 19.444 Atomic orbital electron populations 1.21806 0.95945 1.01923 1.01635 1.21521 0.95890 0.96251 1.02292 1.21671 0.96025 0.97210 1.01485 1.21561 0.94924 0.95828 1.02668 1.21653 0.95990 0.97329 1.01567 1.21833 0.95032 0.93855 1.04378 1.21109 0.95546 0.95809 0.84774 0.89932 1.22484 0.94418 1.02902 1.04107 1.55588 1.86927 1.27607 1.17018 1.04380 0.77192 0.73549 0.73168 1.93464 1.58519 1.86283 1.60400 1.93495 1.83645 1.84132 1.37163 1.29959 1.20112 1.07747 1.10449 1.18457 1.02838 0.87255 0.90798 1.20732 0.92697 1.45299 0.97208 0.93455 1.25491 0.95080 0.95333 1.00407 1.70055 0.98535 1.44648 1.39783 0.85863 0.78424 0.78761 0.80936 1.19964 1.19608 1.20349 1.23299 0.95985 1.04087 1.00651 1.22487 0.92037 1.01076 1.01821 0.92006 0.92864 0.93240 0.91877 0.91410 0.92486 0.93203 0.91563 0.90789 0.92647 0.93648 0.90227 0.88336 0.88986 0.91132 0.92980 0.74516 0.85721 0.85176 0.92670 0.89853 0.88301 0.89322 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.12 -1.71 5.93 30.59 0.18 -1.52 16 3 C -0.13 -2.15 5.21 30.59 0.16 -1.99 16 4 C -0.11 -1.78 5.21 30.59 0.16 -1.62 16 5 C -0.13 -2.58 5.10 30.60 0.16 -2.42 16 6 C -0.11 -1.90 4.81 30.60 0.15 -1.75 16 7 C 0.13 3.00 2.81 44.99 0.13 3.13 16 8 H 0.08 1.97 7.48 -2.39 -0.02 1.95 16 9 C -0.18 -3.48 9.48 71.98 0.68 -2.80 16 10 N -1.11 -31.84 4.81 -169.39 -0.82 -32.65 16 11 S 2.62 105.25 5.33 -56.49 -0.30 104.94 16 12 O -1.00 -42.80 17.39 -127.65 -2.22 -45.02 16 13 O -0.99 -48.96 17.10 -127.65 -2.18 -51.15 16 14 C -0.55 -22.49 4.88 71.98 0.35 -22.14 16 15 C 0.01 0.42 1.34 -52.93 -0.07 0.35 16 16 C -0.52 -29.19 7.66 25.60 0.20 -28.99 16 17 H 0.05 2.79 7.82 -2.91 -0.02 2.77 16 18 C 0.04 2.16 5.39 84.66 0.46 2.61 16 19 N -0.89 -49.27 12.93 21.45 0.28 -48.99 16 20 Si 0.93 44.54 29.55 68.60 2.03 46.57 16 21 H -0.27 -13.28 7.11 99.48 0.71 -12.58 16 22 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 23 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 24 C -0.20 -8.72 9.96 30.62 0.30 -8.41 16 25 C -0.14 -6.03 9.44 30.62 0.29 -5.74 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.06 1.01 8.14 -2.38 -0.02 1.00 16 32 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.04 1.10 7.75 -2.39 -0.02 1.08 16 37 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.05 1.17 5.97 -2.39 -0.01 1.15 16 42 H 0.42 10.67 8.80 -96.74 -0.85 9.82 16 43 H 0.12 5.35 8.14 -2.39 -0.02 5.33 16 44 H 0.13 4.33 7.11 -2.39 -0.02 4.31 16 45 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 46 H 0.08 3.58 8.14 -2.38 -0.02 3.56 16 47 H 0.10 3.74 8.14 -2.39 -0.02 3.72 16 48 H 0.09 3.50 8.14 -2.38 -0.02 3.48 16 49 H 0.07 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -68.98 403.50 0.68 -68.31 By element: Atomic # 1 Polarization: 30.66 SS G_CDS: 0.04 Total: 30.70 kcal Atomic # 6 Polarization: -76.56 SS G_CDS: 3.85 Total: -72.71 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -0.54 Total: -81.64 kcal Atomic # 8 Polarization: -91.76 SS G_CDS: -4.40 Total: -96.16 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: 105.25 SS G_CDS: -0.30 Total: 104.94 kcal Total: -68.98 0.68 -68.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829877092.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.281 kcal (2) G-P(sol) polarization free energy of solvation -68.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds