Wall clock time and date at job start Tue Mar 31 2020 12:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46615 * 2 1 4 4 C 1.52993 * 109.47222 * 240.00581 * 2 1 3 5 5 C 1.53002 * 115.55305 * 55.20534 * 4 2 1 6 6 C 1.53002 * 117.49876 * 200.87982 * 4 2 1 7 7 C 1.52999 * 117.49726 * 269.53908 * 4 2 1 8 8 H 1.09000 * 117.50617 * 145.02423 * 7 4 2 9 9 N 1.46504 * 117.49818 * 359.97438 * 7 4 2 10 10 C 1.34783 * 119.99943 * 159.62669 * 9 7 4 11 11 O 1.21287 * 119.99970 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00134 * 180.02562 * 10 9 7 13 13 C 1.50696 * 109.47166 * 180.02562 * 12 10 9 14 14 C 1.38300 * 119.93011 * 269.72460 * 13 12 10 15 15 C 1.38096 * 120.06802 * 179.72756 * 14 13 12 16 16 C 1.38882 * 119.93203 * 0.54503 * 15 14 13 17 17 O 1.35745 * 120.07212 * 179.74859 * 16 15 14 18 18 C 1.34829 * 117.00260 * 174.34456 * 17 16 15 19 19 H 1.07996 * 119.99718 * 5.06655 * 18 17 16 20 20 C 1.38657 * 120.00116 * 185.06743 * 18 17 16 21 21 N 1.31559 * 119.99849 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99940 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47292 * 90.00123 * 22 20 18 24 24 H 1.48505 * 109.47100 * 209.99855 * 22 20 18 25 25 H 1.48502 * 109.47208 * 329.99735 * 22 20 18 26 26 C 1.38882 * 119.86023 * 359.73178 * 16 15 14 27 27 C 1.38102 * 119.92831 * 359.97438 * 26 16 15 28 28 H 1.09001 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46837 * 60.00156 * 1 2 3 30 30 H 1.09001 * 109.47183 * 299.99515 * 1 2 3 31 31 H 1.08998 * 109.47321 * 119.99796 * 2 1 3 32 32 H 1.08999 * 109.47706 * 305.05774 * 3 2 1 33 33 H 1.09008 * 109.46833 * 65.06011 * 3 2 1 34 34 H 1.08999 * 109.46860 * 185.05254 * 3 2 1 35 35 H 1.08993 * 109.46972 * 34.42183 * 5 4 2 36 36 H 1.09002 * 109.46845 * 154.41925 * 5 4 2 37 37 H 1.09000 * 109.47412 * 274.41522 * 5 4 2 38 38 H 1.08994 * 117.50189 * 214.97637 * 6 4 2 39 39 H 1.09004 * 117.49608 * 359.97438 * 6 4 2 40 40 H 0.96998 * 120.00139 * 339.63844 * 9 7 4 41 41 H 1.09001 * 109.46835 * 300.00541 * 12 10 9 42 42 H 1.08999 * 109.47233 * 60.00041 * 12 10 9 43 43 H 1.08005 * 119.96321 * 0.02562 * 14 13 12 44 44 H 1.08001 * 120.03571 * 180.27949 * 15 14 13 45 45 H 0.96994 * 120.00067 * 179.97438 * 21 20 18 46 46 H 1.07997 * 120.03733 * 179.97438 * 26 16 15 47 47 H 1.08006 * 119.96432 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.5174 -0.1817 -2.5822 6 6 3.4711 -1.2617 -1.2182 7 6 2.2859 -2.2276 -1.1445 8 1 2.0757 -2.8344 -2.0252 9 7 2.0154 -2.8690 0.1446 10 6 1.8111 -4.1999 0.2054 11 8 1.8517 -4.8665 -0.8071 12 6 1.5323 -4.8597 1.5312 13 6 1.3431 -6.3405 1.3255 14 6 0.0806 -6.8468 1.0757 15 6 -0.0952 -8.2026 0.8811 16 6 0.9957 -9.0594 0.9478 17 8 0.8254 -10.3933 0.7621 18 6 1.9386 -11.1530 0.7231 19 1 2.9030 -10.7081 0.9187 20 6 1.8452 -12.5054 0.4321 21 7 2.9314 -13.2466 0.3936 22 14 0.1770 -13.2748 0.0932 23 1 -0.1187 -13.1954 -1.3599 24 1 0.1926 -14.6976 0.5181 25 1 -0.8690 -12.5430 0.8519 26 6 2.2615 -8.5487 1.2045 27 6 2.4316 -7.1911 1.3921 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6045 1.9819 -0.8412 33 1 1.7524 1.9295 0.9319 34 1 3.1262 1.4439 -0.0905 35 1 1.3915 0.8987 -2.5126 36 1 2.2308 -0.4141 -3.3730 37 1 0.5579 -0.6455 -2.8108 38 1 4.0401 -1.2333 -2.1474 39 1 4.0493 -1.1032 -0.3078 40 1 1.9831 -2.3360 0.9543 41 1 2.3726 -4.6911 2.2047 42 1 0.6276 -4.4344 1.9656 43 1 -0.7681 -6.1804 1.0279 44 1 -1.0807 -8.5968 0.6816 45 1 2.8661 -14.1927 0.1903 46 1 3.1118 -9.2124 1.2574 47 1 3.4157 -6.7932 1.5914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838035281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:59 Heat of formation + Delta-G solvation = -28.850374 kcal Electronic energy + Delta-G solvation = -25682.974186 eV Core-core repulsion = 22024.803420 eV Total energy + Delta-G solvation = -3658.170766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.30260 -39.24263 -38.47062 -36.58420 -34.36495 -32.90511 -32.42172 -31.35164 -30.18941 -28.52436 -27.53127 -26.80396 -24.91611 -23.13508 -22.47952 -22.03319 -20.94993 -20.04948 -18.70662 -17.84494 -17.28996 -17.05382 -16.66137 -15.33845 -15.18863 -14.87801 -14.58277 -14.20700 -14.12525 -13.89260 -13.84295 -13.70801 -13.47305 -13.38128 -13.22651 -12.66501 -12.65025 -12.53611 -12.36300 -12.16582 -12.11367 -11.87015 -11.58318 -11.53628 -11.26521 -10.96659 -10.91413 -10.89680 -10.72101 -10.63433 -10.12228 -10.10472 -9.70725 -9.33918 -8.81950 -8.79177 -8.18721 -7.26080 -6.37484 -4.03725 2.19194 2.20722 2.67504 3.06347 3.25199 3.29452 3.43610 3.53371 4.22042 4.27563 4.37250 4.49079 4.51452 4.59486 4.88355 4.89199 4.93924 4.97065 5.06178 5.15177 5.22811 5.26219 5.27784 5.39279 5.46705 5.48989 5.49726 5.53517 5.61230 5.64014 5.70153 5.70818 5.77638 5.80653 5.85661 5.92982 6.06115 6.18012 6.37822 6.41301 6.61392 6.84334 7.06965 7.26849 7.35468 7.43899 7.66647 7.85137 8.08524 8.31036 8.97960 9.60939 10.70276 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030032 B = 0.002198 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.118034 B =12737.871914 C =12869.356485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.057 4.057 3 C -0.145 4.145 4 C -0.129 4.129 5 C -0.115 4.115 6 C -0.187 4.187 7 C 0.094 3.906 8 H 0.134 0.866 9 N -0.711 5.711 10 C 0.512 3.488 11 O -0.517 6.517 12 C -0.081 4.081 13 C -0.161 4.161 14 C -0.062 4.062 15 C -0.191 4.191 16 C 0.162 3.838 17 O -0.218 6.218 18 C -0.388 4.388 19 H 0.106 0.894 20 C 0.062 3.938 21 N -0.881 5.881 22 Si 0.906 3.094 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.260 1.260 26 C -0.219 4.219 27 C -0.058 4.058 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.397 0.603 41 H 0.093 0.907 42 H 0.093 0.907 43 H 0.110 0.890 44 H 0.116 0.884 45 H 0.279 0.721 46 H 0.133 0.867 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.711 29.261 0.835 29.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.076 4.076 3 C -0.202 4.202 4 C -0.130 4.130 5 C -0.172 4.172 6 C -0.226 4.226 7 C -0.012 4.012 8 H 0.152 0.848 9 N -0.363 5.363 10 C 0.299 3.701 11 O -0.391 6.391 12 C -0.121 4.121 13 C -0.163 4.163 14 C -0.080 4.080 15 C -0.210 4.210 16 C 0.110 3.890 17 O -0.123 6.123 18 C -0.464 4.464 19 H 0.124 0.876 20 C -0.141 4.141 21 N -0.519 5.519 22 Si 0.731 3.269 23 H -0.199 1.199 24 H -0.208 1.208 25 H -0.184 1.184 26 C -0.238 4.238 27 C -0.076 4.076 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.233 0.767 41 H 0.111 0.889 42 H 0.111 0.889 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.089 0.911 46 H 0.150 0.850 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.801 28.343 0.040 28.481 hybrid contribution -0.292 -0.138 0.198 0.379 sum -3.093 28.205 0.238 28.376 Atomic orbital electron populations 1.21816 0.94580 1.02173 1.01766 1.20572 0.95962 0.95798 0.95279 1.21812 1.01190 0.95520 1.01669 1.22026 0.98714 0.95180 0.97081 1.21340 1.01099 1.00914 0.93826 1.23687 0.91184 1.04050 1.03639 1.21725 1.01095 0.89424 0.88982 0.84803 1.45558 1.73782 1.08168 1.08802 1.21044 0.75785 0.81111 0.92122 1.90748 1.48618 1.62994 1.36734 1.20427 1.03458 0.94089 0.94126 1.18685 0.94051 0.92212 1.11302 1.20397 0.95792 0.93965 0.97835 1.20147 0.97569 0.92430 1.10884 1.19121 0.93197 0.83910 0.92776 1.83566 1.35106 1.13730 1.79921 1.20773 0.85705 0.90883 1.49009 0.87635 1.24471 0.98769 0.95068 0.95772 1.69648 1.27778 1.07442 1.46995 0.86175 0.83352 0.77971 0.79363 1.19893 1.20826 1.18375 1.21223 0.97914 0.95586 1.09106 1.20566 0.96916 0.92878 0.97252 0.92384 0.92414 0.92682 0.91582 0.92453 0.92706 0.92555 0.91835 0.92285 0.92028 0.88161 0.88670 0.76716 0.88862 0.88867 0.87216 0.86556 0.91105 0.84966 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.95 37.16 0.33 -0.56 16 2 C -0.06 -0.34 2.48 -90.62 -0.22 -0.57 16 3 C -0.14 -0.76 8.96 37.16 0.33 -0.43 16 4 C -0.13 -0.92 1.63 -154.51 -0.25 -1.17 16 5 C -0.11 -0.75 8.75 37.16 0.33 -0.42 16 6 C -0.19 -1.45 9.83 -26.69 -0.26 -1.71 16 7 C 0.09 0.92 6.10 -67.89 -0.41 0.50 16 8 H 0.13 1.61 7.46 -51.93 -0.39 1.22 16 9 N -0.71 -6.96 5.39 -53.76 -0.29 -7.25 16 10 C 0.51 6.96 7.82 -10.98 -0.09 6.87 16 11 O -0.52 -9.68 15.63 5.55 0.09 -9.60 16 12 C -0.08 -0.98 5.83 -29.04 -0.17 -1.15 16 13 C -0.16 -2.75 4.38 -104.58 -0.46 -3.21 16 14 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 15 C -0.19 -3.97 9.99 -39.40 -0.39 -4.36 16 16 C 0.16 3.90 6.65 -39.10 -0.26 3.64 16 17 O -0.22 -5.94 8.59 0.07 0.00 -5.94 16 18 C -0.39 -11.23 9.95 30.89 0.31 -10.93 16 19 H 0.11 3.12 5.44 -52.49 -0.29 2.83 16 20 C 0.06 1.78 5.49 -17.51 -0.10 1.69 16 21 N -0.88 -25.93 13.96 55.48 0.77 -25.15 16 22 Si 0.91 22.18 28.62 -169.99 -4.86 17.31 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.22 -4.94 9.17 -39.39 -0.36 -5.30 16 27 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.34 7.44 -51.93 -0.39 -0.04 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.38 6.28 -51.93 -0.33 0.05 16 32 H 0.06 0.29 6.90 -51.93 -0.36 -0.07 16 33 H 0.05 0.26 8.14 -51.92 -0.42 -0.17 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.35 6.64 -51.93 -0.34 0.01 16 36 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.10 0.74 8.05 -51.93 -0.42 0.32 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.40 2.78 6.78 -40.82 -0.28 2.51 16 41 H 0.09 0.92 8.08 -51.93 -0.42 0.50 16 42 H 0.09 0.88 8.08 -51.93 -0.42 0.46 16 43 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 44 H 0.12 2.24 8.06 -52.49 -0.42 1.82 16 45 H 0.28 7.58 8.31 -40.82 -0.34 7.24 16 46 H 0.13 3.12 5.64 -52.49 -0.30 2.82 16 47 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 LS Contribution 384.89 15.07 5.80 5.80 Total: -1.00 -33.07 384.89 -8.21 -41.28 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.27 Total: 3.62 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -2.45 Total: -20.07 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.48 Total: -32.40 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.09 Total: -15.54 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.86 Total: 17.31 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.07 -8.21 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838035281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.425 kcal (2) G-P(sol) polarization free energy of solvation -33.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds