Wall clock time and date at job start Tue Mar 31 2020 12:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46615 * 2 1 4 4 C 1.52993 * 109.47222 * 240.00581 * 2 1 3 5 5 C 1.53002 * 115.55305 * 55.20534 * 4 2 1 6 6 C 1.53002 * 117.49876 * 200.87982 * 4 2 1 7 7 C 1.52999 * 117.49726 * 269.53908 * 4 2 1 8 8 H 1.09000 * 117.50617 * 145.02423 * 7 4 2 9 9 N 1.46504 * 117.49818 * 359.97438 * 7 4 2 10 10 C 1.34783 * 119.99943 * 159.62669 * 9 7 4 11 11 O 1.21287 * 119.99970 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00134 * 180.02562 * 10 9 7 13 13 C 1.50696 * 109.47166 * 180.02562 * 12 10 9 14 14 C 1.38300 * 119.93011 * 269.72460 * 13 12 10 15 15 C 1.38096 * 120.06802 * 179.72756 * 14 13 12 16 16 C 1.38882 * 119.93203 * 0.54503 * 15 14 13 17 17 O 1.35745 * 120.07212 * 179.74859 * 16 15 14 18 18 C 1.34829 * 117.00260 * 174.34456 * 17 16 15 19 19 H 1.07996 * 119.99718 * 5.06655 * 18 17 16 20 20 C 1.38657 * 120.00116 * 185.06743 * 18 17 16 21 21 N 1.31559 * 119.99849 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99940 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.47292 * 90.00123 * 22 20 18 24 24 H 1.48505 * 109.47100 * 209.99855 * 22 20 18 25 25 H 1.48502 * 109.47208 * 329.99735 * 22 20 18 26 26 C 1.38882 * 119.86023 * 359.73178 * 16 15 14 27 27 C 1.38102 * 119.92831 * 359.97438 * 26 16 15 28 28 H 1.09001 * 109.47021 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46837 * 60.00156 * 1 2 3 30 30 H 1.09001 * 109.47183 * 299.99515 * 1 2 3 31 31 H 1.08998 * 109.47321 * 119.99796 * 2 1 3 32 32 H 1.08999 * 109.47706 * 305.05774 * 3 2 1 33 33 H 1.09008 * 109.46833 * 65.06011 * 3 2 1 34 34 H 1.08999 * 109.46860 * 185.05254 * 3 2 1 35 35 H 1.08993 * 109.46972 * 34.42183 * 5 4 2 36 36 H 1.09002 * 109.46845 * 154.41925 * 5 4 2 37 37 H 1.09000 * 109.47412 * 274.41522 * 5 4 2 38 38 H 1.08994 * 117.50189 * 214.97637 * 6 4 2 39 39 H 1.09004 * 117.49608 * 359.97438 * 6 4 2 40 40 H 0.96998 * 120.00139 * 339.63844 * 9 7 4 41 41 H 1.09001 * 109.46835 * 300.00541 * 12 10 9 42 42 H 1.08999 * 109.47233 * 60.00041 * 12 10 9 43 43 H 1.08005 * 119.96321 * 0.02562 * 14 13 12 44 44 H 1.08001 * 120.03571 * 180.27949 * 15 14 13 45 45 H 0.96994 * 120.00067 * 179.97438 * 21 20 18 46 46 H 1.07997 * 120.03733 * 179.97438 * 26 16 15 47 47 H 1.08006 * 119.96432 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 1.5174 -0.1817 -2.5822 6 6 3.4711 -1.2617 -1.2182 7 6 2.2859 -2.2276 -1.1445 8 1 2.0757 -2.8344 -2.0252 9 7 2.0154 -2.8690 0.1446 10 6 1.8111 -4.1999 0.2054 11 8 1.8517 -4.8665 -0.8071 12 6 1.5323 -4.8597 1.5312 13 6 1.3431 -6.3405 1.3255 14 6 0.0806 -6.8468 1.0757 15 6 -0.0952 -8.2026 0.8811 16 6 0.9957 -9.0594 0.9478 17 8 0.8254 -10.3933 0.7621 18 6 1.9386 -11.1530 0.7231 19 1 2.9030 -10.7081 0.9187 20 6 1.8452 -12.5054 0.4321 21 7 2.9314 -13.2466 0.3936 22 14 0.1770 -13.2748 0.0932 23 1 -0.1187 -13.1954 -1.3599 24 1 0.1926 -14.6976 0.5181 25 1 -0.8690 -12.5430 0.8519 26 6 2.2615 -8.5487 1.2045 27 6 2.4316 -7.1911 1.3921 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6045 1.9819 -0.8412 33 1 1.7524 1.9295 0.9319 34 1 3.1262 1.4439 -0.0905 35 1 1.3915 0.8987 -2.5126 36 1 2.2308 -0.4141 -3.3730 37 1 0.5579 -0.6455 -2.8108 38 1 4.0401 -1.2333 -2.1474 39 1 4.0493 -1.1032 -0.3078 40 1 1.9831 -2.3360 0.9543 41 1 2.3726 -4.6911 2.2047 42 1 0.6276 -4.4344 1.9656 43 1 -0.7681 -6.1804 1.0279 44 1 -1.0807 -8.5968 0.6816 45 1 2.8661 -14.1927 0.1903 46 1 3.1118 -9.2124 1.2574 47 1 3.4157 -6.7932 1.5914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838035281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:57:58 Heat of formation + Delta-G solvation = -48.815297 kcal Electronic energy + Delta-G solvation = -25683.839930 eV Core-core repulsion = 22024.803420 eV Total energy + Delta-G solvation = -3659.036510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.28655 -40.73824 -39.55312 -38.21793 -35.10003 -34.52629 -33.71079 -32.69018 -31.80756 -29.21709 -28.34375 -27.88688 -26.76625 -23.73756 -23.65412 -23.40535 -22.17514 -21.26122 -19.82682 -19.31721 -19.09043 -18.05027 -17.47003 -16.76801 -16.43625 -15.96482 -15.83188 -15.66932 -15.58619 -15.32131 -14.86724 -14.72382 -14.50993 -14.35564 -14.20775 -14.11657 -14.05224 -13.70122 -13.16418 -13.05016 -12.93939 -12.79911 -12.67506 -12.52130 -12.46314 -12.37854 -12.31843 -11.98560 -11.93311 -11.58794 -11.40153 -11.28596 -11.01013 -10.88180 -10.63311 -9.79191 -9.59752 -8.98538 -8.50957 -6.23480 0.58298 0.61192 1.29513 1.34512 1.50828 1.67160 2.15821 2.27385 2.77801 2.86699 3.04750 3.18167 3.64034 3.80894 3.82494 3.89103 4.01807 4.03453 4.12799 4.18270 4.40700 4.43599 4.47035 4.57110 4.57854 4.68540 4.78989 4.81821 4.88313 4.90723 4.95517 4.96756 5.02669 5.04237 5.08589 5.16168 5.24645 5.25250 5.36690 5.37321 5.49902 5.56027 5.58537 5.60125 5.73589 5.79328 5.90845 6.24481 6.61067 6.83173 7.35799 7.57965 8.60870 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.030032 B = 0.002198 C = 0.002175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 932.118034 B =12737.871914 C =12869.356485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.108 4.108 5 C -0.117 4.117 6 C -0.179 4.179 7 C 0.065 3.935 8 H 0.104 0.896 9 N -0.689 5.689 10 C 0.513 3.487 11 O -0.580 6.580 12 C -0.079 4.079 13 C -0.137 4.137 14 C -0.059 4.059 15 C -0.194 4.194 16 C 0.118 3.882 17 O -0.246 6.246 18 C -0.400 4.400 19 H 0.079 0.921 20 C 0.008 3.992 21 N -0.924 5.924 22 Si 0.973 3.027 23 H -0.268 1.268 24 H -0.264 1.264 25 H -0.262 1.262 26 C -0.239 4.239 27 C -0.065 4.065 28 H 0.046 0.954 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.415 0.585 41 H 0.127 0.873 42 H 0.136 0.864 43 H 0.153 0.847 44 H 0.128 0.872 45 H 0.285 0.715 46 H 0.106 0.894 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.257 33.366 1.937 33.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 C -0.200 4.200 4 C -0.110 4.110 5 C -0.175 4.175 6 C -0.218 4.218 7 C -0.041 4.041 8 H 0.122 0.878 9 N -0.341 5.341 10 C 0.301 3.699 11 O -0.459 6.459 12 C -0.118 4.118 13 C -0.138 4.138 14 C -0.077 4.077 15 C -0.213 4.213 16 C 0.069 3.931 17 O -0.154 6.154 18 C -0.476 4.476 19 H 0.096 0.904 20 C -0.191 4.191 21 N -0.565 5.565 22 Si 0.795 3.205 23 H -0.193 1.193 24 H -0.189 1.189 25 H -0.186 1.186 26 C -0.258 4.258 27 C -0.083 4.083 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.120 0.880 39 H 0.124 0.876 40 H 0.253 0.747 41 H 0.145 0.855 42 H 0.153 0.847 43 H 0.171 0.829 44 H 0.146 0.854 45 H 0.094 0.906 46 H 0.124 0.876 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.340 32.549 1.180 32.858 hybrid contribution 0.233 -0.966 -0.121 1.001 sum -4.107 31.583 1.060 31.867 Atomic orbital electron populations 1.21806 0.94515 1.01565 1.02337 1.20624 0.95947 0.96317 0.94674 1.21795 1.01155 0.94802 1.02253 1.22088 0.97987 0.92831 0.98045 1.21384 1.00773 1.01725 0.93577 1.23739 0.91323 1.02422 1.04266 1.21682 1.03904 0.90506 0.88004 0.87777 1.45302 1.71975 1.07141 1.09661 1.21205 0.75080 0.81939 0.91657 1.90752 1.51881 1.64487 1.38746 1.20557 1.07048 0.90101 0.94103 1.19291 0.92922 0.95046 1.06555 1.20945 0.97702 0.93122 0.95920 1.20508 0.97136 0.93472 1.10143 1.19682 0.95004 0.83428 0.95010 1.83505 1.33958 1.15186 1.82715 1.20708 0.85663 0.91684 1.49568 0.90374 1.25318 1.02657 0.95370 0.95711 1.69732 1.29746 1.08039 1.48938 0.85189 0.78423 0.77655 0.79244 1.19295 1.18870 1.18631 1.21250 0.96862 0.97215 1.10467 1.20911 0.99150 0.91491 0.96753 0.93522 0.92484 0.91589 0.90775 0.92324 0.91832 0.92560 0.90434 0.92399 0.92573 0.88043 0.87580 0.74655 0.85503 0.84654 0.82904 0.85377 0.90557 0.87615 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.95 71.98 0.64 -0.66 16 2 C -0.06 -0.49 2.48 -10.79 -0.03 -0.51 16 3 C -0.14 -1.00 8.96 71.98 0.64 -0.35 16 4 C -0.11 -1.29 1.63 -52.18 -0.09 -1.37 16 5 C -0.12 -1.32 8.75 71.98 0.63 -0.69 16 6 C -0.18 -2.38 9.83 30.62 0.30 -2.08 16 7 C 0.07 1.17 6.10 45.02 0.27 1.44 16 8 H 0.10 2.54 7.46 -2.39 -0.02 2.52 16 9 N -0.69 -11.35 5.39 -442.40 -2.39 -13.74 16 10 C 0.51 12.42 7.82 87.66 0.69 13.11 16 11 O -0.58 -21.16 15.63 -3.05 -0.05 -21.20 16 12 C -0.08 -1.52 5.83 29.10 0.17 -1.35 16 13 C -0.14 -4.27 4.38 -19.84 -0.09 -4.35 16 14 C -0.06 -1.93 9.69 22.25 0.22 -1.71 16 15 C -0.19 -7.92 9.99 22.39 0.22 -7.70 16 16 C 0.12 5.88 6.65 22.58 0.15 6.03 16 17 O -0.25 -14.09 8.59 -22.67 -0.19 -14.29 16 18 C -0.40 -24.70 9.95 67.92 0.68 -24.02 16 19 H 0.08 5.07 5.44 -2.91 -0.02 5.05 16 20 C 0.01 0.45 5.49 84.83 0.47 0.92 16 21 N -0.92 -56.96 13.96 21.61 0.30 -56.65 16 22 Si 0.97 47.17 28.62 68.60 1.96 49.13 16 23 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 24 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 26 C -0.24 -11.28 9.17 22.39 0.21 -11.08 16 27 C -0.06 -2.42 9.69 22.25 0.22 -2.20 16 28 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.06 0.53 7.44 -2.39 -0.02 0.51 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.45 16 31 H 0.07 0.52 6.28 -2.39 -0.01 0.51 16 32 H 0.06 0.40 6.90 -2.39 -0.02 0.39 16 33 H 0.06 0.36 8.14 -2.38 -0.02 0.34 16 34 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.08 0.67 6.64 -2.39 -0.02 0.65 16 36 H 0.06 0.66 7.90 -2.39 -0.02 0.65 16 37 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 1.34 8.05 -2.39 -0.02 1.32 16 39 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.41 3.96 6.78 -92.71 -0.63 3.33 16 41 H 0.13 1.73 8.08 -2.39 -0.02 1.71 16 42 H 0.14 1.61 8.08 -2.39 -0.02 1.59 16 43 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 44 H 0.13 4.83 8.06 -2.91 -0.02 4.81 16 45 H 0.28 16.05 8.31 -92.71 -0.77 15.28 16 46 H 0.11 5.47 5.64 -2.91 -0.02 5.45 16 47 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -78.44 384.89 5.28 -73.15 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: 0.34 Total: 20.19 kcal Atomic # 6 Polarization: -41.89 SS G_CDS: 5.30 Total: -36.59 kcal Atomic # 7 Polarization: -68.31 SS G_CDS: -2.08 Total: -70.39 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -0.24 Total: -35.49 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.96 Total: 49.13 kcal Total: -78.44 5.28 -73.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838035281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.338 kcal (2) G-P(sol) polarization free energy of solvation -78.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds