Wall clock time and date at job start Tue Mar 31 2020 12:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.47212 * 2 1 4 4 C 1.53002 * 109.47072 * 120.00298 * 2 1 3 5 5 C 1.52999 * 115.55759 * 280.37090 * 4 2 1 6 6 C 1.52997 * 117.49764 * 134.68462 * 4 2 1 7 7 C 1.53001 * 117.49911 * 66.06129 * 4 2 1 8 8 H 1.08999 * 117.49542 * 214.97708 * 7 4 2 9 9 N 1.46497 * 117.50185 * 359.97438 * 7 4 2 10 10 C 1.34770 * 120.00268 * 203.96686 * 9 7 4 11 11 O 1.21289 * 119.99875 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00223 * 179.97438 * 10 9 7 13 13 C 1.50698 * 109.46975 * 180.02562 * 12 10 9 14 14 C 1.38302 * 119.92783 * 269.72584 * 13 12 10 15 15 C 1.38112 * 120.06583 * 179.72985 * 14 13 12 16 16 C 1.38878 * 119.92859 * 0.52372 * 15 14 13 17 17 O 1.35749 * 120.06726 * 179.73305 * 16 15 14 18 18 C 1.34827 * 116.99957 * 174.55476 * 17 16 15 19 19 H 1.07997 * 120.00348 * 5.00644 * 18 17 16 20 20 C 1.38654 * 120.00070 * 185.01227 * 18 17 16 21 21 N 1.31559 * 120.00047 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00349 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47355 * 89.99595 * 22 20 18 24 24 H 1.48500 * 109.47283 * 210.00065 * 22 20 18 25 25 H 1.48506 * 109.46923 * 329.99920 * 22 20 18 26 26 C 1.38875 * 119.86412 * 359.74749 * 16 15 14 27 27 C 1.38103 * 119.92879 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.46886 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46602 * 299.99551 * 1 2 3 30 30 H 1.09001 * 109.47032 * 59.99971 * 1 2 3 31 31 H 1.09005 * 109.46450 * 240.00203 * 2 1 3 32 32 H 1.08995 * 109.47152 * 172.99980 * 3 2 1 33 33 H 1.09008 * 109.47169 * 292.99866 * 3 2 1 34 34 H 1.09003 * 109.47086 * 52.99218 * 3 2 1 35 35 H 1.09006 * 109.46924 * 205.69054 * 5 4 2 36 36 H 1.09001 * 109.47380 * 325.69093 * 5 4 2 37 37 H 1.08995 * 109.46827 * 85.69572 * 5 4 2 38 38 H 1.09000 * 117.50008 * 145.01331 * 6 4 2 39 39 H 1.09000 * 117.50003 * 359.97438 * 6 4 2 40 40 H 0.97004 * 119.99744 * 23.96945 * 9 7 4 41 41 H 1.08997 * 109.47157 * 299.99826 * 12 10 9 42 42 H 1.08999 * 109.47212 * 59.99987 * 12 10 9 43 43 H 1.07994 * 119.96914 * 359.97438 * 14 13 12 44 44 H 1.07998 * 120.03548 * 180.27659 * 15 14 13 45 45 H 0.96999 * 120.00387 * 180.02562 * 21 20 18 46 46 H 1.08002 * 120.03629 * 180.02562 * 26 16 15 47 47 H 1.08001 * 119.96324 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0258 0.1019 2.5388 6 6 3.1753 -1.7309 1.0680 7 6 1.7564 -2.2204 1.3647 8 1 1.5596 -2.6201 2.3595 9 7 1.0167 -2.8551 0.2710 10 6 0.3254 -3.9902 0.4947 11 8 0.3153 -4.4860 1.6016 12 6 -0.4359 -4.6428 -0.6303 13 6 -1.1173 -5.8865 -0.1204 14 6 -0.4620 -7.1033 -0.1734 15 6 -1.0816 -8.2440 0.2982 16 6 -2.3682 -8.1700 0.8159 17 8 -2.9820 -9.2904 1.2752 18 6 -4.1829 -9.1315 1.8670 19 1 -4.6509 -8.1584 1.8864 20 6 -4.8172 -10.2175 2.4508 21 7 -4.2474 -11.4030 2.4269 22 14 -6.4808 -9.9973 3.2715 23 1 -7.5582 -10.2202 2.2741 24 1 -6.6204 -10.9774 4.3783 25 1 -6.5863 -8.6191 3.8144 26 6 -3.0257 -6.9477 0.8625 27 6 -2.3989 -5.8099 0.3937 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 3.1228 1.4450 0.1252 33 1 1.7826 1.9189 -0.9460 34 1 1.5780 1.9912 0.8207 35 1 2.7820 -0.2824 3.2235 36 1 2.2422 1.1447 2.3067 37 1 1.0433 0.0297 3.0050 38 1 3.9121 -1.8087 1.8675 39 1 3.5586 -1.8815 0.0588 40 1 1.0246 -2.4584 -0.6141 41 1 -1.1850 -3.9493 -1.0124 42 1 0.2549 -4.9086 -1.4304 43 1 0.5367 -7.1609 -0.5802 44 1 -0.5678 -9.1931 0.2608 45 1 -4.6913 -12.1628 2.8350 46 1 -4.0261 -6.8869 1.2649 47 1 -2.9098 -4.8590 0.4292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838035282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:05 Heat of formation + Delta-G solvation = -27.923429 kcal Electronic energy + Delta-G solvation = -25768.655515 eV Core-core repulsion = 22110.524944 eV Total energy + Delta-G solvation = -3658.130571 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.31067 -39.12421 -38.36614 -36.41317 -34.27266 -32.95886 -32.36688 -31.16620 -30.09418 -28.58778 -27.33898 -26.60153 -25.09052 -23.01002 -22.48274 -21.91724 -20.97319 -20.05551 -18.77565 -17.92691 -17.05273 -16.89139 -16.55395 -15.28370 -15.17916 -14.76056 -14.47056 -14.34885 -14.08777 -13.97958 -13.83564 -13.59642 -13.44534 -13.30204 -13.12827 -12.78196 -12.65657 -12.52079 -12.16411 -12.03122 -11.88910 -11.64056 -11.48792 -11.46001 -11.22492 -11.02093 -10.90140 -10.80835 -10.72103 -10.56943 -10.38997 -10.06579 -9.66718 -9.27282 -8.77474 -8.72845 -8.09333 -7.10993 -6.39950 -3.98414 2.29893 2.31257 2.70774 3.09248 3.16488 3.18516 3.22279 3.56163 4.01194 4.25871 4.39558 4.53312 4.58943 4.62426 4.88608 4.96612 5.01837 5.09983 5.13438 5.29099 5.29992 5.31503 5.37357 5.45807 5.49294 5.50201 5.53251 5.56019 5.66499 5.69039 5.73760 5.77613 5.80839 5.88517 5.90399 5.99331 6.08647 6.27174 6.43834 6.47395 6.75922 6.97081 7.10821 7.29337 7.42445 7.46711 7.51022 7.89638 8.05438 8.34789 9.05805 9.76777 10.78244 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.002274 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.302332 B =12312.182741 C =12662.272397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.058 4.058 3 C -0.145 4.145 4 C -0.130 4.130 5 C -0.119 4.119 6 C -0.187 4.187 7 C 0.095 3.905 8 H 0.135 0.865 9 N -0.710 5.710 10 C 0.511 3.489 11 O -0.517 6.517 12 C -0.079 4.079 13 C -0.170 4.170 14 C -0.059 4.059 15 C -0.191 4.191 16 C 0.157 3.843 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.273 1.273 24 H -0.278 1.278 25 H -0.268 1.268 26 C -0.232 4.232 27 C -0.056 4.056 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.095 0.905 40 H 0.398 0.602 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.116 0.884 45 H 0.269 0.731 46 H 0.126 0.874 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.007 24.303 -6.683 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.077 4.077 3 C -0.202 4.202 4 C -0.132 4.132 5 C -0.176 4.176 6 C -0.226 4.226 7 C -0.012 4.012 8 H 0.152 0.848 9 N -0.362 5.362 10 C 0.299 3.701 11 O -0.390 6.390 12 C -0.119 4.119 13 C -0.171 4.171 14 C -0.078 4.078 15 C -0.211 4.211 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.467 4.467 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.199 1.199 24 H -0.203 1.203 25 H -0.192 1.192 26 C -0.252 4.252 27 C -0.075 4.075 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.113 0.887 40 H 0.233 0.767 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.126 0.874 44 H 0.134 0.866 45 H 0.079 0.921 46 H 0.144 0.856 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 11.969 23.408 -5.778 26.918 hybrid contribution -0.720 0.378 0.008 0.813 sum 11.250 23.786 -5.770 26.937 Atomic orbital electron populations 1.21920 0.94618 1.02613 1.01766 1.20603 0.95884 0.95947 0.95238 1.21859 1.01085 0.95603 1.01664 1.22042 1.02782 0.90924 0.97412 1.21421 1.02102 0.99651 0.94428 1.23721 0.92410 1.03231 1.03221 1.21697 0.93579 0.92623 0.93258 0.84754 1.45578 1.51726 1.26606 1.12296 1.21089 0.78638 0.79570 0.90838 1.90746 1.61007 1.62384 1.24910 1.20409 0.99114 0.96429 0.95973 1.18614 0.95853 0.92799 1.09845 1.20400 0.97728 0.91681 0.97971 1.20155 0.94172 0.98771 1.07969 1.19380 0.91511 0.86916 0.91908 1.83975 1.32559 1.26839 1.64825 1.21323 0.93272 0.97082 1.34980 0.89100 1.25286 0.99826 0.94464 0.97013 1.70041 1.38212 0.99586 1.42040 0.85716 0.80368 0.78578 0.78789 1.19916 1.20278 1.19209 1.21102 1.02076 0.92664 1.09314 1.20501 0.93901 0.96910 0.96140 0.91914 0.92508 0.92706 0.91443 0.92545 0.92768 0.92256 0.92342 0.91437 0.92088 0.88202 0.88690 0.76681 0.89016 0.88973 0.87405 0.86556 0.92084 0.85601 0.87858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.94 37.16 0.33 -0.71 16 2 C -0.06 -0.37 2.24 -90.62 -0.20 -0.57 16 3 C -0.14 -0.80 8.17 37.15 0.30 -0.49 16 4 C -0.13 -0.97 1.78 -154.51 -0.27 -1.24 16 5 C -0.12 -0.82 9.62 37.16 0.36 -0.47 16 6 C -0.19 -1.46 9.75 -26.73 -0.26 -1.72 16 7 C 0.09 0.94 5.96 -67.93 -0.41 0.54 16 8 H 0.13 1.66 7.41 -51.93 -0.38 1.27 16 9 N -0.71 -7.10 4.03 -53.81 -0.22 -7.32 16 10 C 0.51 7.11 7.82 -10.99 -0.09 7.03 16 11 O -0.52 -9.86 15.61 5.55 0.09 -9.78 16 12 C -0.08 -1.00 5.83 -29.04 -0.17 -1.17 16 13 C -0.17 -3.01 4.38 -104.58 -0.46 -3.46 16 14 C -0.06 -1.12 9.69 -39.60 -0.38 -1.51 16 15 C -0.19 -4.26 9.99 -39.39 -0.39 -4.66 16 16 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 17 O -0.18 -5.27 9.76 0.06 0.00 -5.27 16 18 C -0.39 -11.23 9.49 30.89 0.29 -10.93 16 19 H 0.09 2.43 5.20 -52.49 -0.27 2.15 16 20 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 21 N -0.86 -25.88 13.67 55.48 0.76 -25.12 16 22 Si 0.94 21.03 29.55 -169.99 -5.02 16.01 16 23 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 24 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 C -0.23 -5.30 9.17 -39.39 -0.36 -5.66 16 27 C -0.06 -1.09 9.69 -39.61 -0.38 -1.47 16 28 H 0.06 0.49 6.10 -51.93 -0.32 0.18 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.40 7.37 -51.93 -0.38 0.01 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 34 H 0.06 0.32 6.80 -51.93 -0.35 -0.03 16 35 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 36 H 0.07 0.40 5.78 -51.93 -0.30 0.10 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.10 0.73 8.05 -51.93 -0.42 0.32 16 39 H 0.09 0.68 8.09 -51.93 -0.42 0.26 16 40 H 0.40 2.89 6.92 -40.82 -0.28 2.61 16 41 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 42 H 0.09 0.92 8.08 -51.93 -0.42 0.51 16 43 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 44 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 45 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.13 2.86 5.64 -52.49 -0.30 2.57 16 47 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 LS Contribution 383.21 15.07 5.77 5.77 Total: -1.00 -34.05 383.21 -8.26 -42.31 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.19 Total: 5.22 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -2.45 Total: -21.83 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.54 Total: -32.44 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.09 Total: -15.04 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.05 -8.26 -42.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838035282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.385 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds