Wall clock time and date at job start Tue Mar 31 2020 12:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52995 * 109.47212 * 2 1 4 4 C 1.53002 * 109.47072 * 120.00298 * 2 1 3 5 5 C 1.52999 * 115.55759 * 280.37090 * 4 2 1 6 6 C 1.52997 * 117.49764 * 134.68462 * 4 2 1 7 7 C 1.53001 * 117.49911 * 66.06129 * 4 2 1 8 8 H 1.08999 * 117.49542 * 214.97708 * 7 4 2 9 9 N 1.46497 * 117.50185 * 359.97438 * 7 4 2 10 10 C 1.34770 * 120.00268 * 203.96686 * 9 7 4 11 11 O 1.21289 * 119.99875 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00223 * 179.97438 * 10 9 7 13 13 C 1.50698 * 109.46975 * 180.02562 * 12 10 9 14 14 C 1.38302 * 119.92783 * 269.72584 * 13 12 10 15 15 C 1.38112 * 120.06583 * 179.72985 * 14 13 12 16 16 C 1.38878 * 119.92859 * 0.52372 * 15 14 13 17 17 O 1.35749 * 120.06726 * 179.73305 * 16 15 14 18 18 C 1.34827 * 116.99957 * 174.55476 * 17 16 15 19 19 H 1.07997 * 120.00348 * 5.00644 * 18 17 16 20 20 C 1.38654 * 120.00070 * 185.01227 * 18 17 16 21 21 N 1.31559 * 120.00047 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00349 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47355 * 89.99595 * 22 20 18 24 24 H 1.48500 * 109.47283 * 210.00065 * 22 20 18 25 25 H 1.48506 * 109.46923 * 329.99920 * 22 20 18 26 26 C 1.38875 * 119.86412 * 359.74749 * 16 15 14 27 27 C 1.38103 * 119.92879 * 0.02562 * 26 16 15 28 28 H 1.08999 * 109.46886 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46602 * 299.99551 * 1 2 3 30 30 H 1.09001 * 109.47032 * 59.99971 * 1 2 3 31 31 H 1.09005 * 109.46450 * 240.00203 * 2 1 3 32 32 H 1.08995 * 109.47152 * 172.99980 * 3 2 1 33 33 H 1.09008 * 109.47169 * 292.99866 * 3 2 1 34 34 H 1.09003 * 109.47086 * 52.99218 * 3 2 1 35 35 H 1.09006 * 109.46924 * 205.69054 * 5 4 2 36 36 H 1.09001 * 109.47380 * 325.69093 * 5 4 2 37 37 H 1.08995 * 109.46827 * 85.69572 * 5 4 2 38 38 H 1.09000 * 117.50008 * 145.01331 * 6 4 2 39 39 H 1.09000 * 117.50003 * 359.97438 * 6 4 2 40 40 H 0.97004 * 119.99744 * 23.96945 * 9 7 4 41 41 H 1.08997 * 109.47157 * 299.99826 * 12 10 9 42 42 H 1.08999 * 109.47212 * 59.99987 * 12 10 9 43 43 H 1.07994 * 119.96914 * 359.97438 * 14 13 12 44 44 H 1.07998 * 120.03548 * 180.27659 * 15 14 13 45 45 H 0.96999 * 120.00387 * 180.02562 * 21 20 18 46 46 H 1.08002 * 120.03629 * 180.02562 * 26 16 15 47 47 H 1.08001 * 119.96324 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 2.0258 0.1019 2.5388 6 6 3.1753 -1.7309 1.0680 7 6 1.7564 -2.2204 1.3647 8 1 1.5596 -2.6201 2.3595 9 7 1.0167 -2.8551 0.2710 10 6 0.3254 -3.9902 0.4947 11 8 0.3153 -4.4860 1.6016 12 6 -0.4359 -4.6428 -0.6303 13 6 -1.1173 -5.8865 -0.1204 14 6 -0.4620 -7.1033 -0.1734 15 6 -1.0816 -8.2440 0.2982 16 6 -2.3682 -8.1700 0.8159 17 8 -2.9820 -9.2904 1.2752 18 6 -4.1829 -9.1315 1.8670 19 1 -4.6509 -8.1584 1.8864 20 6 -4.8172 -10.2175 2.4508 21 7 -4.2474 -11.4030 2.4269 22 14 -6.4808 -9.9973 3.2715 23 1 -7.5582 -10.2202 2.2741 24 1 -6.6204 -10.9774 4.3783 25 1 -6.5863 -8.6191 3.8144 26 6 -3.0257 -6.9477 0.8625 27 6 -2.3989 -5.8099 0.3937 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 3.1228 1.4450 0.1252 33 1 1.7826 1.9189 -0.9460 34 1 1.5780 1.9912 0.8207 35 1 2.7820 -0.2824 3.2235 36 1 2.2422 1.1447 2.3067 37 1 1.0433 0.0297 3.0050 38 1 3.9121 -1.8087 1.8675 39 1 3.5586 -1.8815 0.0588 40 1 1.0246 -2.4584 -0.6141 41 1 -1.1850 -3.9493 -1.0124 42 1 0.2549 -4.9086 -1.4304 43 1 0.5367 -7.1609 -0.5802 44 1 -0.5678 -9.1931 0.2608 45 1 -4.6913 -12.1628 2.8350 46 1 -4.0261 -6.8869 1.2649 47 1 -2.9098 -4.8590 0.4292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838035282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:04 Heat of formation + Delta-G solvation = -48.573281 kcal Electronic energy + Delta-G solvation = -25769.550960 eV Core-core repulsion = 22110.524944 eV Total energy + Delta-G solvation = -3659.026016 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.27938 -40.65667 -39.51456 -38.11654 -35.02884 -34.40384 -33.75070 -32.58841 -31.77272 -29.28947 -28.12292 -27.80875 -26.97562 -23.63771 -23.58431 -23.43756 -22.23303 -21.28882 -19.84552 -19.41087 -18.83552 -17.99497 -17.37269 -16.61316 -16.39306 -16.05284 -15.83779 -15.78936 -15.49785 -15.19082 -14.83881 -14.70129 -14.57220 -14.39356 -14.19056 -14.09959 -13.70929 -13.59894 -13.31356 -12.96764 -12.86689 -12.77517 -12.49765 -12.47794 -12.31696 -12.28445 -12.21500 -12.12926 -11.97087 -11.70423 -11.42937 -11.17872 -10.97495 -10.78444 -10.60291 -9.76138 -9.54475 -8.89916 -8.47520 -6.15684 0.61673 0.67259 1.33350 1.43121 1.51522 1.68103 2.16642 2.18717 2.84522 2.87991 3.17232 3.52606 3.65309 3.81529 3.84697 3.90281 4.04038 4.06357 4.14010 4.21169 4.38413 4.45274 4.49333 4.59399 4.60191 4.70616 4.79794 4.81013 4.87243 4.91844 4.94623 5.00334 5.05174 5.07912 5.10503 5.14712 5.17657 5.24235 5.30851 5.37775 5.49819 5.56295 5.56827 5.62055 5.71771 5.78132 6.02760 6.23279 6.62275 6.96922 7.37175 7.78429 8.75959 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024064 B = 0.002274 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.302332 B =12312.182741 C =12662.272397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.174 4.174 7 C 0.065 3.935 8 H 0.103 0.897 9 N -0.687 5.687 10 C 0.513 3.487 11 O -0.580 6.580 12 C -0.077 4.077 13 C -0.145 4.145 14 C -0.058 4.058 15 C -0.207 4.207 16 C 0.111 3.889 17 O -0.233 6.233 18 C -0.414 4.414 19 H 0.100 0.900 20 C -0.025 4.025 21 N -0.921 5.921 22 Si 1.020 2.980 23 H -0.260 1.260 24 H -0.270 1.270 25 H -0.256 1.256 26 C -0.244 4.244 27 C -0.060 4.060 28 H 0.052 0.948 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.102 0.898 39 H 0.109 0.891 40 H 0.416 0.584 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.147 0.853 44 H 0.112 0.888 45 H 0.273 0.727 46 H 0.117 0.883 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.992 28.364 -8.654 32.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.115 4.115 5 C -0.179 4.179 6 C -0.213 4.213 7 C -0.041 4.041 8 H 0.121 0.879 9 N -0.338 5.338 10 C 0.301 3.699 11 O -0.459 6.459 12 C -0.117 4.117 13 C -0.146 4.146 14 C -0.076 4.076 15 C -0.226 4.226 16 C 0.061 3.939 17 O -0.140 6.140 18 C -0.490 4.490 19 H 0.117 0.883 20 C -0.222 4.222 21 N -0.560 5.560 22 Si 0.839 3.161 23 H -0.184 1.184 24 H -0.195 1.195 25 H -0.179 1.179 26 C -0.263 4.263 27 C -0.078 4.078 28 H 0.071 0.929 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.254 0.746 41 H 0.147 0.853 42 H 0.150 0.850 43 H 0.164 0.836 44 H 0.130 0.870 45 H 0.082 0.918 46 H 0.135 0.865 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.006 27.564 -7.817 31.465 hybrid contribution -0.745 -0.567 0.478 1.051 sum 12.261 26.997 -7.339 30.546 Atomic orbital electron populations 1.21915 0.94958 1.01998 1.01994 1.20652 0.95512 0.96567 0.94828 1.21844 1.01223 0.94850 1.02146 1.22111 1.01650 0.89513 0.98212 1.21466 1.01637 1.00491 0.94317 1.23782 0.91387 1.02018 1.04088 1.21642 0.95733 0.94654 0.92060 0.87898 1.45299 1.50194 1.25205 1.13141 1.21207 0.78580 0.80077 0.90038 1.90752 1.63523 1.64347 1.27279 1.20538 1.00494 0.94443 0.96177 1.19244 0.94893 0.94617 1.05846 1.20882 0.99112 0.90852 0.96720 1.20446 0.93509 1.00263 1.08374 1.19938 0.93020 0.87222 0.93686 1.83935 1.33527 1.29110 1.67462 1.21815 0.93748 0.97888 1.35565 0.88304 1.26626 1.04351 0.93805 0.97442 1.70189 1.40705 1.00740 1.44336 0.84573 0.74646 0.79070 0.77800 1.18436 1.19501 1.17927 1.21226 1.02013 0.93175 1.09920 1.20928 0.94817 0.96949 0.95121 0.92861 0.93412 0.91451 0.90204 0.92244 0.91908 0.92385 0.92339 0.89998 0.93016 0.87936 0.87253 0.74603 0.85308 0.85013 0.83556 0.87003 0.91834 0.86515 0.84450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 8.94 71.99 0.64 -0.96 16 2 C -0.06 -0.52 2.24 -10.79 -0.02 -0.54 16 3 C -0.14 -1.07 8.17 71.98 0.59 -0.49 16 4 C -0.11 -1.41 1.78 -52.18 -0.09 -1.50 16 5 C -0.12 -1.48 9.62 71.98 0.69 -0.79 16 6 C -0.17 -2.24 9.75 30.59 0.30 -1.94 16 7 C 0.07 1.19 5.96 44.99 0.27 1.45 16 8 H 0.10 2.58 7.41 -2.39 -0.02 2.56 16 9 N -0.69 -11.50 4.03 -442.53 -1.78 -13.28 16 10 C 0.51 12.71 7.82 87.66 0.69 13.39 16 11 O -0.58 -21.59 15.61 -3.06 -0.05 -21.64 16 12 C -0.08 -1.56 5.83 29.10 0.17 -1.39 16 13 C -0.14 -4.71 4.38 -19.84 -0.09 -4.79 16 14 C -0.06 -2.07 9.69 22.25 0.22 -1.86 16 15 C -0.21 -9.48 9.99 22.39 0.22 -9.26 16 16 C 0.11 5.94 6.65 22.58 0.15 6.09 16 17 O -0.23 -14.81 9.76 -22.70 -0.22 -15.03 16 18 C -0.41 -25.27 9.49 67.92 0.64 -24.63 16 19 H 0.10 5.58 5.20 -2.91 -0.02 5.56 16 20 C -0.03 -1.48 5.49 84.83 0.47 -1.02 16 21 N -0.92 -58.44 13.67 21.61 0.30 -58.15 16 22 Si 1.02 44.53 29.55 68.60 2.03 46.56 16 23 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 26 C -0.24 -11.43 9.17 22.39 0.21 -11.23 16 27 C -0.06 -2.22 9.69 22.25 0.22 -2.01 16 28 H 0.05 0.66 6.10 -2.39 -0.01 0.64 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.08 0.56 7.37 -2.38 -0.02 0.55 16 32 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.39 8.14 -2.38 -0.02 0.37 16 34 H 0.06 0.46 6.80 -2.39 -0.02 0.44 16 35 H 0.06 0.71 7.90 -2.38 -0.02 0.69 16 36 H 0.08 0.77 5.78 -2.39 -0.01 0.75 16 37 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.10 1.28 8.05 -2.39 -0.02 1.26 16 39 H 0.11 1.12 8.09 -2.39 -0.02 1.10 16 40 H 0.42 4.09 6.92 -92.71 -0.64 3.45 16 41 H 0.13 1.78 8.08 -2.39 -0.02 1.76 16 42 H 0.13 1.75 8.08 -2.39 -0.02 1.73 16 43 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 44 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 45 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 46 H 0.12 5.54 5.64 -2.91 -0.02 5.53 16 47 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -82.32 383.21 5.87 -76.45 By element: Atomic # 1 Polarization: 26.21 SS G_CDS: 0.33 Total: 26.54 kcal Atomic # 6 Polarization: -46.72 SS G_CDS: 5.26 Total: -41.46 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -1.49 Total: -71.43 kcal Atomic # 8 Polarization: -36.40 SS G_CDS: -0.27 Total: -36.67 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal Total: -82.32 5.87 -76.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838035282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.876 kcal (2) G-P(sol) polarization free energy of solvation -82.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds