Wall clock time and date at job start Tue Mar 31 2020 12:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46752 * 2 1 4 4 C 1.52990 * 109.47280 * 120.00146 * 2 1 3 5 5 C 1.53005 * 115.55300 * 34.32974 * 4 2 1 6 6 C 1.53009 * 117.51998 * 248.62665 * 4 2 1 7 7 C 1.52997 * 59.99910 * 252.52174 * 6 4 2 8 8 H 1.09002 * 117.52022 * 107.48469 * 7 6 4 9 9 N 1.46498 * 117.49621 * 252.50520 * 7 6 4 10 10 C 1.34779 * 120.00219 * 223.62395 * 9 7 6 11 11 O 1.21279 * 120.00132 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99825 * 180.02562 * 10 9 7 13 13 C 1.50699 * 109.46623 * 179.97438 * 12 10 9 14 14 C 1.38304 * 119.92761 * 90.00796 * 13 12 10 15 15 C 1.38103 * 120.06897 * 180.02562 * 14 13 12 16 16 C 1.38878 * 119.93137 * 359.96651 * 15 14 13 17 17 O 1.35751 * 120.07119 * 180.02562 * 16 15 14 18 18 C 1.34838 * 116.99901 * 354.46592 * 17 16 15 19 19 H 1.07999 * 119.99562 * 5.05950 * 18 17 16 20 20 C 1.38647 * 120.00139 * 185.05303 * 18 17 16 21 21 N 1.31560 * 119.99842 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00237 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47007 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47328 * 119.99910 * 22 20 18 25 25 H 1.48502 * 109.47203 * 240.00460 * 22 20 18 26 26 C 1.38882 * 119.86309 * 0.28342 * 16 15 14 27 27 C 1.38110 * 119.92623 * 359.44523 * 26 16 15 28 28 H 1.09004 * 109.46721 * 299.99853 * 1 2 3 29 29 H 1.08995 * 109.47715 * 59.99981 * 1 2 3 30 30 H 1.09003 * 109.47106 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46987 * 240.00791 * 2 1 3 32 32 H 1.09004 * 109.47252 * 300.00429 * 3 2 1 33 33 H 1.08996 * 109.47144 * 60.00297 * 3 2 1 34 34 H 1.08998 * 109.47048 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47238 * 205.66562 * 5 4 2 36 36 H 1.08999 * 109.46844 * 325.66747 * 5 4 2 37 37 H 1.09001 * 109.46737 * 85.66699 * 5 4 2 38 38 H 1.09000 * 117.49970 * 145.02978 * 6 4 2 39 39 H 1.09004 * 117.49541 * 0.02562 * 6 4 2 40 40 H 0.97003 * 119.99994 * 43.63016 * 9 7 6 41 41 H 1.09004 * 109.46907 * 60.00591 * 12 10 9 42 42 H 1.08993 * 109.47251 * 300.00207 * 12 10 9 43 43 H 1.08000 * 119.97005 * 359.97438 * 14 13 12 44 44 H 1.07999 * 120.03486 * 179.97438 * 15 14 13 45 45 H 0.96998 * 119.99733 * 180.02562 * 21 20 18 46 46 H 1.07996 * 120.03406 * 179.72142 * 26 16 15 47 47 H 1.07998 * 119.96231 * 180.27511 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.1853 -1.8965 1.7278 6 6 2.7420 0.1222 2.3154 7 6 3.5551 -0.8280 1.4341 8 1 4.1884 -0.3844 0.6659 9 7 4.0763 -2.0477 2.0560 10 6 5.3406 -2.4434 1.8078 11 8 6.0469 -1.7895 1.0700 12 6 5.8765 -3.6985 2.4471 13 6 7.3021 -3.9156 2.0095 14 6 8.3400 -3.3737 2.7457 15 6 9.6475 -3.5704 2.3471 16 6 9.9198 -4.3139 1.2061 17 8 11.2040 -4.5095 0.8120 18 6 12.1623 -3.8612 1.5045 19 1 11.9003 -3.2869 2.3808 20 6 13.4840 -3.9322 1.0917 21 7 13.8030 -4.6315 0.0241 22 14 14.8117 -3.0348 2.0515 23 1 14.1970 -2.3264 3.2029 24 1 15.8103 -4.0145 2.5497 25 1 15.4833 -2.0503 1.1655 26 6 8.8752 -4.8524 0.4661 27 6 7.5700 -4.6568 0.8730 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.3353 -2.0430 2.7975 36 1 0.1340 -1.6838 1.5341 37 1 1.4778 -2.8001 1.1928 38 1 2.5948 -0.1601 3.3579 39 1 2.8401 1.1914 2.1272 40 1 3.5115 -2.5707 2.6463 41 1 5.2691 -4.5502 2.1407 42 1 5.8402 -3.5978 3.5317 43 1 8.1278 -2.7954 3.6328 44 1 10.4576 -3.1467 2.9222 45 1 14.7278 -4.6814 -0.2645 46 1 9.0835 -5.4271 -0.4242 47 1 6.7574 -5.0790 0.3005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838035284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:11 Heat of formation + Delta-G solvation = -26.748298 kcal Electronic energy + Delta-G solvation = -25551.453936 eV Core-core repulsion = 21893.374323 eV Total energy + Delta-G solvation = -3658.079613 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.29520 -39.17115 -38.43896 -36.42409 -34.53744 -32.51878 -32.14439 -31.01333 -30.09256 -29.69239 -26.83151 -26.42701 -25.09259 -23.37828 -22.34035 -21.91280 -20.78402 -20.08732 -18.61398 -17.92646 -17.16925 -16.92249 -16.34804 -15.68777 -15.24107 -14.86311 -14.59297 -14.37577 -14.27404 -13.87786 -13.66926 -13.52187 -13.36833 -13.21791 -12.94187 -12.80588 -12.65886 -12.52214 -12.28474 -11.92968 -11.83697 -11.73330 -11.49216 -11.38067 -11.23098 -11.05790 -10.89317 -10.81350 -10.71296 -10.55399 -10.38155 -10.00233 -9.66991 -9.26960 -8.77829 -8.74298 -8.09260 -7.10919 -6.40092 -3.98492 2.29904 2.31278 2.71055 3.09366 3.16603 3.18619 3.22830 3.57663 4.01106 4.34638 4.40842 4.51799 4.58630 4.63540 4.77463 4.95999 5.05068 5.13274 5.13674 5.29086 5.30310 5.30908 5.37658 5.40922 5.43280 5.46761 5.52965 5.58599 5.67995 5.70233 5.73494 5.77697 5.80666 5.90439 5.91356 6.00887 6.04931 6.27313 6.44614 6.47523 6.75999 6.97131 7.11114 7.29537 7.42625 7.47523 7.51311 7.89689 8.05533 8.35250 9.05838 9.76811 10.78209 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024924 B = 0.002164 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.142127 B =12938.367764 C =13254.438158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.059 4.059 3 C -0.153 4.153 4 C -0.131 4.131 5 C -0.124 4.124 6 C -0.191 4.191 7 C 0.093 3.907 8 H 0.135 0.865 9 N -0.711 5.711 10 C 0.512 3.488 11 O -0.518 6.518 12 C -0.079 4.079 13 C -0.170 4.170 14 C -0.056 4.056 15 C -0.232 4.232 16 C 0.156 3.844 17 O -0.179 6.179 18 C -0.390 4.390 19 H 0.092 0.908 20 C 0.038 3.962 21 N -0.864 5.864 22 Si 0.941 3.059 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.191 4.191 27 C -0.059 4.059 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.398 0.602 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.126 0.874 45 H 0.269 0.731 46 H 0.116 0.884 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.654 6.813 5.201 27.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C -0.210 4.210 4 C -0.132 4.132 5 C -0.181 4.181 6 C -0.230 4.230 7 C -0.013 4.013 8 H 0.152 0.848 9 N -0.363 5.363 10 C 0.299 3.701 11 O -0.391 6.391 12 C -0.119 4.119 13 C -0.171 4.171 14 C -0.075 4.075 15 C -0.251 4.251 16 C 0.103 3.897 17 O -0.082 6.082 18 C -0.466 4.466 19 H 0.110 0.890 20 C -0.166 4.166 21 N -0.499 5.499 22 Si 0.766 3.234 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.211 4.211 27 C -0.078 4.078 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.112 0.888 39 H 0.124 0.876 40 H 0.232 0.768 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.122 0.878 44 H 0.144 0.856 45 H 0.079 0.921 46 H 0.135 0.865 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -25.761 7.076 4.345 27.066 hybrid contribution 0.350 0.329 0.866 0.991 sum -25.411 7.405 5.212 26.976 Atomic orbital electron populations 1.21896 0.94943 1.01802 1.01654 1.20564 0.95648 0.95549 0.95951 1.21995 1.01384 0.95788 1.01809 1.22072 0.93857 0.99453 0.97854 1.21442 0.99887 0.96344 1.00406 1.23838 1.04157 0.98584 0.96374 1.21727 0.91814 0.88269 0.99519 0.84751 1.45503 1.14268 1.26231 1.50250 1.21091 0.80594 0.87068 0.81347 1.90741 1.57016 1.55473 1.35884 1.20405 0.95566 0.94975 1.00951 1.18621 0.92079 1.06699 0.99704 1.20509 0.92162 0.96840 0.97968 1.21106 0.96787 1.07014 1.00240 1.19382 0.86081 0.92296 0.91955 1.83979 1.10307 1.60736 1.53220 1.21376 0.85687 1.29764 1.09773 0.89041 1.25289 0.97376 0.97304 0.96662 1.70054 1.19037 1.38042 1.22747 0.85646 0.79931 0.78828 0.79006 1.19122 1.20195 1.20159 1.20157 0.90870 1.07865 1.02161 1.20399 0.95172 0.97304 0.94905 0.92578 0.92740 0.92214 0.90753 0.92566 0.92209 0.92302 0.92618 0.91085 0.92025 0.88802 0.87601 0.76773 0.88958 0.89002 0.87846 0.85592 0.92138 0.86549 0.87401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 8.20 37.16 0.30 -0.54 16 2 C -0.06 -0.42 3.15 -90.62 -0.29 -0.70 16 3 C -0.15 -1.06 7.79 37.16 0.29 -0.77 16 4 C -0.13 -0.98 2.47 -154.51 -0.38 -1.36 16 5 C -0.12 -0.76 8.49 37.16 0.32 -0.44 16 6 C -0.19 -1.50 9.14 -26.73 -0.24 -1.75 16 7 C 0.09 0.94 5.77 -67.93 -0.39 0.55 16 8 H 0.13 1.68 6.87 -51.93 -0.36 1.32 16 9 N -0.71 -7.25 5.34 -53.81 -0.29 -7.54 16 10 C 0.51 7.21 7.82 -10.98 -0.09 7.13 16 11 O -0.52 -9.95 15.60 5.56 0.09 -9.86 16 12 C -0.08 -1.00 5.83 -29.03 -0.17 -1.17 16 13 C -0.17 -3.02 4.38 -104.58 -0.46 -3.47 16 14 C -0.06 -1.10 9.69 -39.61 -0.38 -1.48 16 15 C -0.23 -5.32 9.17 -39.39 -0.36 -5.68 16 16 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 17 O -0.18 -5.28 9.76 0.02 0.00 -5.28 16 18 C -0.39 -11.22 9.49 30.88 0.29 -10.93 16 19 H 0.09 2.45 5.20 -52.49 -0.27 2.18 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -25.90 13.67 55.48 0.76 -25.14 16 22 Si 0.94 21.07 29.55 -169.99 -5.02 16.05 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 26 C -0.19 -4.26 9.99 -39.39 -0.39 -4.66 16 27 C -0.06 -1.12 9.69 -39.61 -0.38 -1.51 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.32 6.45 -51.93 -0.33 -0.01 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.38 6.98 -51.93 -0.36 0.02 16 34 H 0.06 0.46 7.08 -51.93 -0.37 0.09 16 35 H 0.05 0.30 7.61 -51.93 -0.40 -0.10 16 36 H 0.07 0.38 5.58 -51.93 -0.29 0.09 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.68 8.05 -51.93 -0.42 0.26 16 39 H 0.11 0.79 5.85 -51.93 -0.30 0.49 16 40 H 0.40 2.87 7.70 -40.82 -0.31 2.55 16 41 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 42 H 0.09 0.94 8.08 -51.93 -0.42 0.52 16 43 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.13 2.88 5.64 -52.49 -0.30 2.58 16 45 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 47 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 380.81 15.07 5.74 5.74 Total: -1.00 -34.26 380.81 -8.49 -42.74 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -7.07 Total: 5.42 kcal Atomic # 6 Polarization: -19.44 SS G_CDS: -2.69 Total: -22.13 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.47 Total: -32.68 kcal Atomic # 8 Polarization: -15.23 SS G_CDS: 0.09 Total: -15.14 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.26 -8.49 -42.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838035284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.993 kcal (2) G-P(sol) polarization free energy of solvation -34.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds