Wall clock time and date at job start Tue Mar 31 2020 12:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46752 * 2 1 4 4 C 1.52990 * 109.47280 * 120.00146 * 2 1 3 5 5 C 1.53005 * 115.55300 * 34.32974 * 4 2 1 6 6 C 1.53009 * 117.51998 * 248.62665 * 4 2 1 7 7 C 1.52997 * 59.99910 * 252.52174 * 6 4 2 8 8 H 1.09002 * 117.52022 * 107.48469 * 7 6 4 9 9 N 1.46498 * 117.49621 * 252.50520 * 7 6 4 10 10 C 1.34779 * 120.00219 * 223.62395 * 9 7 6 11 11 O 1.21279 * 120.00132 * 0.02562 * 10 9 7 12 12 C 1.50702 * 119.99825 * 180.02562 * 10 9 7 13 13 C 1.50699 * 109.46623 * 179.97438 * 12 10 9 14 14 C 1.38304 * 119.92761 * 90.00796 * 13 12 10 15 15 C 1.38103 * 120.06897 * 180.02562 * 14 13 12 16 16 C 1.38878 * 119.93137 * 359.96651 * 15 14 13 17 17 O 1.35751 * 120.07119 * 180.02562 * 16 15 14 18 18 C 1.34838 * 116.99901 * 354.46592 * 17 16 15 19 19 H 1.07999 * 119.99562 * 5.05950 * 18 17 16 20 20 C 1.38647 * 120.00139 * 185.05303 * 18 17 16 21 21 N 1.31560 * 119.99842 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00237 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47007 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47328 * 119.99910 * 22 20 18 25 25 H 1.48502 * 109.47203 * 240.00460 * 22 20 18 26 26 C 1.38882 * 119.86309 * 0.28342 * 16 15 14 27 27 C 1.38110 * 119.92623 * 359.44523 * 26 16 15 28 28 H 1.09004 * 109.46721 * 299.99853 * 1 2 3 29 29 H 1.08995 * 109.47715 * 59.99981 * 1 2 3 30 30 H 1.09003 * 109.47106 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46987 * 240.00791 * 2 1 3 32 32 H 1.09004 * 109.47252 * 300.00429 * 3 2 1 33 33 H 1.08996 * 109.47144 * 60.00297 * 3 2 1 34 34 H 1.08998 * 109.47048 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47238 * 205.66562 * 5 4 2 36 36 H 1.08999 * 109.46844 * 325.66747 * 5 4 2 37 37 H 1.09001 * 109.46737 * 85.66699 * 5 4 2 38 38 H 1.09000 * 117.49970 * 145.02978 * 6 4 2 39 39 H 1.09004 * 117.49541 * 0.02562 * 6 4 2 40 40 H 0.97003 * 119.99994 * 43.63016 * 9 7 6 41 41 H 1.09004 * 109.46907 * 60.00591 * 12 10 9 42 42 H 1.08993 * 109.47251 * 300.00207 * 12 10 9 43 43 H 1.08000 * 119.97005 * 359.97438 * 14 13 12 44 44 H 1.07999 * 120.03486 * 179.97438 * 15 14 13 45 45 H 0.96998 * 119.99733 * 180.02562 * 21 20 18 46 46 H 1.07996 * 120.03406 * 179.72142 * 26 16 15 47 47 H 1.07998 * 119.96231 * 180.27511 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 1.1853 -1.8965 1.7278 6 6 2.7420 0.1222 2.3154 7 6 3.5551 -0.8280 1.4341 8 1 4.1884 -0.3844 0.6659 9 7 4.0763 -2.0477 2.0560 10 6 5.3406 -2.4434 1.8078 11 8 6.0469 -1.7895 1.0700 12 6 5.8765 -3.6985 2.4471 13 6 7.3021 -3.9156 2.0095 14 6 8.3400 -3.3737 2.7457 15 6 9.6475 -3.5704 2.3471 16 6 9.9198 -4.3139 1.2061 17 8 11.2040 -4.5095 0.8120 18 6 12.1623 -3.8612 1.5045 19 1 11.9003 -3.2869 2.3808 20 6 13.4840 -3.9322 1.0917 21 7 13.8030 -4.6315 0.0241 22 14 14.8117 -3.0348 2.0515 23 1 14.1970 -2.3264 3.2029 24 1 15.8103 -4.0145 2.5497 25 1 15.4833 -2.0503 1.1655 26 6 8.8752 -4.8524 0.4661 27 6 7.5700 -4.6568 0.8730 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8900 32 1 1.6765 1.9564 -0.8900 33 1 1.6766 1.9563 0.8900 34 1 3.1299 1.4426 -0.0005 35 1 1.3353 -2.0430 2.7975 36 1 0.1340 -1.6838 1.5341 37 1 1.4778 -2.8001 1.1928 38 1 2.5948 -0.1601 3.3579 39 1 2.8401 1.1914 2.1272 40 1 3.5115 -2.5707 2.6463 41 1 5.2691 -4.5502 2.1407 42 1 5.8402 -3.5978 3.5317 43 1 8.1278 -2.7954 3.6328 44 1 10.4576 -3.1467 2.9222 45 1 14.7278 -4.6814 -0.2645 46 1 9.0835 -5.4271 -0.4242 47 1 6.7574 -5.0790 0.3005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838035284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:10 Heat of formation + Delta-G solvation = -48.287879 kcal Electronic energy + Delta-G solvation = -25552.387962 eV Core-core repulsion = 21893.374323 eV Total energy + Delta-G solvation = -3659.013640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.26386 -40.66577 -39.62646 -38.13663 -35.36506 -34.40206 -33.27222 -32.29280 -31.77278 -30.21854 -28.26341 -27.18571 -26.89623 -23.96196 -23.63994 -23.39273 -22.02464 -21.28897 -19.85006 -19.25791 -18.83671 -18.09851 -17.26484 -16.62012 -16.47912 -16.30760 -15.85009 -15.82418 -15.51534 -15.39157 -15.11235 -14.82262 -14.41839 -14.22145 -14.10615 -13.89088 -13.62016 -13.57558 -13.32459 -12.98611 -12.85128 -12.80830 -12.49326 -12.43587 -12.37588 -12.27535 -12.24700 -12.10450 -11.96706 -11.66476 -11.50817 -11.18010 -10.95030 -10.77637 -10.58960 -9.76517 -9.56533 -8.90251 -8.47977 -6.16090 0.61298 0.66743 1.33223 1.42031 1.52181 1.67644 2.16361 2.18774 2.84175 2.88983 3.16742 3.52322 3.71472 3.81757 3.84921 3.90338 4.01777 4.06052 4.13853 4.20771 4.24180 4.44660 4.49229 4.59394 4.62443 4.70762 4.79167 4.80757 4.81513 4.91587 4.95213 4.99267 5.05217 5.06599 5.10463 5.14682 5.19370 5.23286 5.30528 5.36646 5.46128 5.55579 5.56247 5.61043 5.71476 5.77827 6.02624 6.22967 6.63330 6.96614 7.37433 7.78099 8.75759 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.024924 B = 0.002164 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.142127 B =12938.367764 C =13254.438158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.063 4.063 3 C -0.152 4.152 4 C -0.113 4.113 5 C -0.125 4.125 6 C -0.178 4.178 7 C 0.062 3.938 8 H 0.102 0.898 9 N -0.688 5.688 10 C 0.512 3.488 11 O -0.581 6.581 12 C -0.076 4.076 13 C -0.145 4.145 14 C -0.061 4.061 15 C -0.244 4.244 16 C 0.111 3.889 17 O -0.234 6.234 18 C -0.413 4.413 19 H 0.100 0.900 20 C -0.026 4.026 21 N -0.921 5.921 22 Si 1.021 2.979 23 H -0.252 1.252 24 H -0.265 1.265 25 H -0.269 1.269 26 C -0.206 4.206 27 C -0.058 4.058 28 H 0.062 0.938 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.060 0.940 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.417 0.583 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.138 0.862 44 H 0.117 0.883 45 H 0.273 0.727 46 H 0.112 0.888 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.591 7.475 7.821 32.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.209 4.209 4 C -0.114 4.114 5 C -0.182 4.182 6 C -0.216 4.216 7 C -0.044 4.044 8 H 0.120 0.880 9 N -0.340 5.340 10 C 0.300 3.700 11 O -0.460 6.460 12 C -0.116 4.116 13 C -0.146 4.146 14 C -0.079 4.079 15 C -0.263 4.263 16 C 0.061 3.939 17 O -0.141 6.141 18 C -0.489 4.489 19 H 0.117 0.883 20 C -0.223 4.223 21 N -0.560 5.560 22 Si 0.840 3.160 23 H -0.176 1.176 24 H -0.190 1.190 25 H -0.194 1.194 26 C -0.226 4.226 27 C -0.076 4.076 28 H 0.081 0.919 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.255 0.745 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.156 0.844 44 H 0.135 0.865 45 H 0.082 0.918 46 H 0.130 0.870 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -29.818 7.729 7.010 31.591 hybrid contribution 1.138 0.159 0.064 1.151 sum -28.680 7.887 7.074 30.574 Atomic orbital electron populations 1.21864 0.93442 1.02406 1.02142 1.20610 0.96847 0.95335 0.95382 1.21983 1.00354 0.96055 1.02479 1.22144 0.91900 0.99694 0.97706 1.21505 1.00127 0.95304 1.01252 1.23889 1.02385 0.98385 0.96986 1.21672 0.93096 0.89127 1.00499 0.88015 1.45233 1.13195 1.26060 1.49488 1.21237 0.81238 0.86928 0.80559 1.90747 1.58837 1.57492 1.38933 1.20531 0.92128 0.95756 1.03140 1.19254 0.94849 1.02852 0.97657 1.20940 0.90938 0.96707 0.99272 1.21228 0.98474 1.06962 0.99668 1.19938 0.85551 0.94542 0.93832 1.83939 1.11954 1.63083 1.55085 1.21859 0.86437 1.30283 1.10350 0.88281 1.26630 0.99702 0.98119 0.97830 1.70198 1.19827 1.40706 1.25261 0.84506 0.76229 0.77592 0.77699 1.17572 1.18987 1.19391 1.20447 0.91988 1.07990 1.02150 1.20880 0.94479 0.96785 0.95433 0.91926 0.92472 0.91535 0.92095 0.92154 0.91311 0.93903 0.91164 0.89968 0.92128 0.87309 0.87514 0.74538 0.85000 0.85219 0.84411 0.86521 0.91835 0.86997 0.83581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.20 71.98 0.59 -0.68 16 2 C -0.06 -0.80 3.15 -10.80 -0.03 -0.83 16 3 C -0.15 -1.95 7.79 71.98 0.56 -1.39 16 4 C -0.11 -1.41 2.47 -52.18 -0.13 -1.54 16 5 C -0.13 -1.03 8.49 71.98 0.61 -0.42 16 6 C -0.18 -2.33 9.14 30.60 0.28 -2.05 16 7 C 0.06 1.15 5.77 44.99 0.26 1.41 16 8 H 0.10 2.61 6.87 -2.39 -0.02 2.59 16 9 N -0.69 -11.72 5.34 -442.54 -2.36 -14.08 16 10 C 0.51 12.86 7.82 87.66 0.69 13.55 16 11 O -0.58 -21.85 15.60 -3.03 -0.05 -21.90 16 12 C -0.08 -1.54 5.83 29.10 0.17 -1.37 16 13 C -0.15 -4.73 4.38 -19.83 -0.09 -4.82 16 14 C -0.06 -2.25 9.69 22.25 0.22 -2.03 16 15 C -0.24 -11.46 9.17 22.39 0.21 -11.26 16 16 C 0.11 5.95 6.65 22.58 0.15 6.10 16 17 O -0.23 -14.84 9.76 -22.83 -0.22 -15.06 16 18 C -0.41 -25.25 9.49 67.92 0.64 -24.60 16 19 H 0.10 5.61 5.20 -2.91 -0.02 5.59 16 20 C -0.03 -1.52 5.49 84.83 0.47 -1.06 16 21 N -0.92 -58.50 13.67 21.61 0.30 -58.21 16 22 Si 1.02 44.63 29.55 68.60 2.03 46.65 16 23 H -0.25 -10.24 7.11 99.48 0.71 -9.53 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 26 C -0.21 -9.50 9.99 22.39 0.22 -9.27 16 27 C -0.06 -2.09 9.69 22.25 0.22 -1.87 16 28 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.07 0.52 6.45 -2.39 -0.02 0.50 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 33 H 0.07 0.75 6.98 -2.39 -0.02 0.73 16 34 H 0.04 0.68 7.08 -2.39 -0.02 0.66 16 35 H 0.07 0.40 7.61 -2.39 -0.02 0.38 16 36 H 0.08 0.54 5.58 -2.39 -0.01 0.53 16 37 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.11 1.13 8.05 -2.39 -0.02 1.11 16 39 H 0.11 1.39 5.85 -2.38 -0.01 1.37 16 40 H 0.42 3.96 7.70 -92.71 -0.71 3.25 16 41 H 0.13 1.76 8.08 -2.38 -0.02 1.74 16 42 H 0.13 1.79 8.08 -2.39 -0.02 1.77 16 43 H 0.14 4.13 8.06 -2.91 -0.02 4.10 16 44 H 0.12 5.56 5.64 -2.91 -0.02 5.54 16 45 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 46 H 0.11 5.08 8.06 -2.91 -0.02 5.06 16 47 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 Total: -1.00 -83.00 380.81 4.99 -78.01 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: 0.27 Total: 26.72 kcal Atomic # 6 Polarization: -47.16 SS G_CDS: 5.03 Total: -42.13 kcal Atomic # 7 Polarization: -70.22 SS G_CDS: -2.07 Total: -72.29 kcal Atomic # 8 Polarization: -36.69 SS G_CDS: -0.27 Total: -36.96 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -83.00 4.99 -78.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838035284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.725 kcal (2) G-P(sol) polarization free energy of solvation -82.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds