Wall clock time and date at job start Tue Mar 31 2020 12:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.46912 * 2 1 4 4 C 1.52996 * 109.47537 * 239.99714 * 2 1 3 5 5 C 1.53009 * 115.54722 * 34.32956 * 4 2 1 6 6 C 1.52996 * 117.49959 * 248.62611 * 4 2 1 7 7 C 1.52989 * 117.50167 * 179.97438 * 4 2 1 8 8 H 1.08997 * 117.50219 * 214.97925 * 7 4 2 9 9 N 1.46502 * 117.50130 * 359.97438 * 7 4 2 10 10 C 1.34780 * 119.99983 * 205.00177 * 9 7 4 11 11 O 1.21280 * 120.00184 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99490 * 179.97438 * 10 9 7 13 13 C 1.50699 * 109.46826 * 179.97438 * 12 10 9 14 14 C 1.38325 * 119.96865 * 269.72844 * 13 12 10 15 15 C 1.38282 * 120.14128 * 179.76818 * 14 13 12 16 16 C 1.38126 * 120.06373 * 0.50398 * 15 14 13 17 17 C 1.38852 * 119.93271 * 359.74910 * 16 15 14 18 18 O 1.35748 * 120.06826 * 180.02562 * 17 16 15 19 19 C 1.34832 * 117.00275 * 354.44722 * 18 17 16 20 20 H 1.08001 * 119.99799 * 5.04529 * 19 18 17 21 21 C 1.38657 * 120.00148 * 185.05654 * 19 18 17 22 22 N 1.31556 * 120.00071 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 119.99829 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47468 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47248 * 119.99654 * 23 21 19 26 26 H 1.48507 * 109.47135 * 240.00045 * 23 21 19 27 27 C 1.38081 * 119.96365 * 90.00278 * 13 12 10 28 28 H 1.09003 * 109.47106 * 60.00627 * 1 2 3 29 29 H 1.09002 * 109.47438 * 299.99944 * 1 2 3 30 30 H 1.09000 * 109.47119 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47106 * 119.99373 * 2 1 3 32 32 H 1.09002 * 109.47024 * 59.99802 * 3 2 1 33 33 H 1.09004 * 109.46756 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.46725 * 299.99619 * 3 2 1 35 35 H 1.08999 * 109.46546 * 85.58159 * 5 4 2 36 36 H 1.09002 * 109.46696 * 205.58318 * 5 4 2 37 37 H 1.09000 * 109.46922 * 325.58166 * 5 4 2 38 38 H 1.08994 * 117.50061 * 359.97438 * 6 4 2 39 39 H 1.09005 * 117.50009 * 145.02156 * 6 4 2 40 40 H 0.96998 * 119.99702 * 24.99222 * 9 7 4 41 41 H 1.08999 * 109.47884 * 299.99903 * 12 10 9 42 42 H 1.09005 * 109.47125 * 60.00136 * 12 10 9 43 43 H 1.07998 * 119.93251 * 359.97438 * 14 13 12 44 44 H 1.08001 * 119.96857 * 180.22977 * 15 14 13 45 45 H 1.08004 * 120.02743 * 179.72476 * 16 15 14 46 46 H 0.97000 * 119.99814 * 180.02562 * 22 21 19 47 47 H 1.07995 * 120.03544 * 359.95885 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.1853 -0.5482 -2.5063 6 6 2.7419 -2.0663 -1.0512 7 6 3.5550 -0.8276 -1.4344 8 1 3.9425 -0.7750 -2.4518 9 7 4.4063 -0.2304 -0.4025 10 6 5.6586 0.1640 -0.7071 11 8 6.0809 0.0242 -1.8354 12 6 6.5340 0.7788 0.3544 13 6 7.8738 1.1286 -0.2401 14 6 8.9023 0.2039 -0.2181 15 6 10.1317 0.5194 -0.7669 16 6 10.3394 1.7635 -1.3297 17 6 9.3107 2.6959 -1.3487 18 8 9.5117 3.9193 -1.9016 19 6 10.7636 4.2079 -2.3109 20 1 11.5337 3.4520 -2.2674 21 6 11.0623 5.4753 -2.7875 22 7 10.1242 6.3960 -2.8408 23 14 12.7968 5.8752 -3.3539 24 1 13.6589 4.6769 -3.1929 25 1 12.7704 6.2781 -4.7830 26 1 13.3404 6.9889 -2.5356 27 6 8.0753 2.3741 -0.8013 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 0.8901 32 1 1.6766 1.9564 0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.4768 0.3676 -3.0205 36 1 1.3365 -1.4007 -3.1686 37 1 0.1338 -0.4883 -2.2253 38 1 2.8406 -2.4371 -0.0310 39 1 2.5948 -2.8283 -1.8166 40 1 4.0686 -0.1188 0.5000 41 1 6.0597 1.6819 0.7386 42 1 6.6727 0.0669 1.1682 43 1 8.7437 -0.7679 0.2257 44 1 10.9315 -0.2062 -0.7515 45 1 11.3013 2.0109 -1.7542 46 1 10.3331 7.2825 -3.1745 47 1 7.2732 3.0971 -0.8148 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838037077.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:58:31 Heat of formation + Delta-G solvation = -23.939354 kcal Electronic energy + Delta-G solvation = -25964.510211 eV Core-core repulsion = 22306.552402 eV Total energy + Delta-G solvation = -3657.957808 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -40.33072 -39.12813 -38.33942 -36.38590 -34.21056 -33.00257 -32.29103 -31.78585 -29.18390 -28.63521 -27.18478 -26.96744 -25.19666 -22.94544 -22.58694 -21.58417 -21.05581 -20.19771 -18.78560 -17.59257 -17.04243 -16.89165 -16.42547 -15.38673 -15.14802 -14.90091 -14.49496 -14.32638 -14.20456 -14.07638 -13.81813 -13.56813 -13.36591 -13.33223 -13.03340 -12.75695 -12.58203 -12.36181 -12.14592 -11.90897 -11.82628 -11.59364 -11.46920 -11.39227 -11.23203 -10.98892 -10.86533 -10.79740 -10.71983 -10.56130 -10.38901 -10.02135 -9.69102 -9.27393 -8.78604 -8.68531 -8.00355 -7.15418 -6.38803 -3.97585 2.14510 2.45476 2.70593 3.09902 3.17459 3.17705 3.23139 3.59391 4.01588 4.30753 4.44535 4.56046 4.60129 4.66392 4.91542 4.93346 5.07275 5.11549 5.15463 5.16416 5.27075 5.39520 5.47849 5.52468 5.54291 5.54993 5.58996 5.63487 5.69610 5.73873 5.78472 5.79917 5.83672 5.94607 5.99478 6.07290 6.15716 6.23890 6.40052 6.45159 6.72098 6.98105 7.13673 7.32832 7.42800 7.46458 7.50595 7.89305 8.06650 8.33635 9.07204 9.78703 10.79671 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.002508 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.845329 B =11160.371139 C =11869.736927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.059 4.059 3 C -0.157 4.157 4 C -0.129 4.129 5 C -0.121 4.121 6 C -0.187 4.187 7 C 0.095 3.905 8 H 0.136 0.864 9 N -0.708 5.708 10 C 0.516 3.484 11 O -0.515 6.515 12 C -0.094 4.094 13 C -0.033 4.033 14 C -0.196 4.196 15 C -0.075 4.075 16 C -0.231 4.231 17 C 0.155 3.845 18 O -0.180 6.180 19 C -0.390 4.390 20 H 0.092 0.908 21 C 0.038 3.962 22 N -0.865 5.865 23 Si 0.940 3.060 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.174 4.174 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.100 0.900 40 H 0.400 0.600 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.126 0.874 46 H 0.268 0.732 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.110 -14.331 7.941 23.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C -0.214 4.214 4 C -0.131 4.131 5 C -0.178 4.178 6 C -0.226 4.226 7 C -0.012 4.012 8 H 0.153 0.847 9 N -0.361 5.361 10 C 0.303 3.697 11 O -0.389 6.389 12 C -0.134 4.134 13 C -0.034 4.034 14 C -0.215 4.215 15 C -0.093 4.093 16 C -0.250 4.250 17 C 0.101 3.899 18 O -0.084 6.084 19 C -0.466 4.466 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.500 5.500 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.193 4.193 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.235 0.765 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.120 0.880 44 H 0.125 0.875 45 H 0.144 0.856 46 H 0.078 0.922 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -16.918 -13.972 6.988 23.027 hybrid contribution 0.706 0.116 0.142 0.730 sum -16.212 -13.856 7.130 22.487 Atomic orbital electron populations 1.21896 0.94881 1.01687 1.01866 1.20614 0.95944 0.95972 0.95176 1.22016 1.02203 0.95299 1.01908 1.22044 0.93897 0.99481 0.97665 1.21469 0.99465 1.02066 0.94804 1.23738 1.04183 0.91626 1.03019 1.21707 0.87477 0.97786 0.94191 0.84665 1.45586 1.13934 1.63670 1.12877 1.20789 0.81145 0.77647 0.90097 1.90755 1.72709 1.53296 1.22113 1.20596 0.93770 1.02046 0.96939 1.18639 0.92658 0.93566 0.98494 1.20347 0.94109 0.98786 1.08278 1.20677 0.96277 0.95616 0.96749 1.21177 1.00597 0.94865 1.08356 1.19272 0.93168 0.86543 0.90873 1.83977 1.31433 1.26647 1.66346 1.21366 0.84725 0.97835 1.42670 0.89086 1.25274 0.99746 0.94501 0.97072 1.70053 1.32680 1.03883 1.43390 0.85656 0.80438 0.78882 0.78490 1.19134 1.20196 1.20199 1.19942 0.96366 0.97227 1.05775 0.92035 0.92747 0.92656 0.91425 0.92679 0.91594 0.92413 0.91989 0.92383 0.91243 0.88695 0.88204 0.76472 0.88226 0.88377 0.87964 0.87494 0.85624 0.92181 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 8.20 37.16 0.30 -0.60 16 2 C -0.06 -0.41 2.35 -90.62 -0.21 -0.63 16 3 C -0.16 -1.26 8.86 37.16 0.33 -0.93 16 4 C -0.13 -1.04 1.91 -154.51 -0.29 -1.34 16 5 C -0.12 -0.91 9.49 37.16 0.35 -0.56 16 6 C -0.19 -1.51 9.75 -26.71 -0.26 -1.77 16 7 C 0.09 0.99 5.94 -67.91 -0.40 0.59 16 8 H 0.14 1.74 7.40 -51.93 -0.38 1.35 16 9 N -0.71 -7.49 3.78 -53.79 -0.20 -7.70 16 10 C 0.52 7.53 7.82 -10.98 -0.09 7.45 16 11 O -0.52 -10.15 15.60 5.56 0.09 -10.06 16 12 C -0.09 -1.25 5.83 -29.04 -0.17 -1.42 16 13 C -0.03 -0.61 4.37 -104.65 -0.46 -1.07 16 14 C -0.20 -3.61 9.70 -39.53 -0.38 -4.00 16 15 C -0.07 -1.47 10.04 -39.61 -0.40 -1.87 16 16 C -0.23 -5.30 9.17 -39.40 -0.36 -5.66 16 17 C 0.15 3.93 6.65 -39.11 -0.26 3.67 16 18 O -0.18 -5.33 9.76 0.05 0.00 -5.33 16 19 C -0.39 -11.23 9.49 30.89 0.29 -10.93 16 20 H 0.09 2.44 5.20 -52.49 -0.27 2.17 16 21 C 0.04 1.07 5.49 -17.51 -0.10 0.97 16 22 N -0.86 -25.93 13.67 55.48 0.76 -25.17 16 23 Si 0.94 21.05 29.55 -169.99 -5.02 16.03 16 24 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 C -0.17 -3.87 9.65 -39.39 -0.38 -4.25 16 28 H 0.06 0.38 6.45 -51.93 -0.33 0.05 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.44 7.61 -51.93 -0.40 0.04 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.59 5.38 -51.93 -0.28 0.31 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 37 H 0.07 0.45 5.59 -51.93 -0.29 0.16 16 38 H 0.09 0.69 8.05 -51.93 -0.42 0.27 16 39 H 0.10 0.75 8.05 -51.93 -0.42 0.33 16 40 H 0.40 3.12 6.81 -40.82 -0.28 2.84 16 41 H 0.10 1.13 8.08 -51.93 -0.42 0.71 16 42 H 0.10 1.01 8.08 -51.93 -0.42 0.59 16 43 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 44 H 0.11 1.77 8.06 -52.49 -0.42 1.34 16 45 H 0.13 2.87 5.64 -52.48 -0.30 2.57 16 46 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.11 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 381.83 15.07 5.75 5.75 Total: -1.00 -34.32 381.83 -8.24 -42.57 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -7.13 Total: 6.27 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -2.48 Total: -22.35 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: 0.56 Total: -32.87 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.09 Total: -15.39 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.32 -8.24 -42.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838037077.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.627 kcal (2) G-P(sol) polarization free energy of solvation -34.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds