Wall clock time and date at job start Tue Mar 31 2020 13:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47451 * 2 1 4 4 C 1.53001 * 109.46978 * 120.00363 * 2 1 3 5 5 C 1.50700 * 109.47225 * 174.51819 * 4 2 1 6 6 C 1.37984 * 120.07171 * 271.35663 * 5 4 2 7 7 C 1.38332 * 120.14076 * 180.27830 * 6 5 4 8 8 C 1.38389 * 120.29614 * 359.69545 * 7 6 5 9 9 C 1.37931 * 120.14279 * 0.02562 * 8 7 6 10 10 C 1.39558 * 120.07463 * 91.05483 * 5 4 2 11 11 C 1.47847 * 120.14186 * 0.02600 * 10 5 4 12 12 O 1.21546 * 120.00355 * 52.39384 * 11 10 5 13 13 N 1.34781 * 119.99705 * 232.38766 * 11 10 5 14 14 C 1.47424 * 125.64895 * 355.28827 * 13 11 10 15 15 C 1.55383 * 104.87615 * 204.16555 * 14 13 11 16 16 C 1.55161 * 101.36301 * 323.01656 * 15 14 13 17 17 O 1.42900 * 110.72090 * 277.04066 * 16 15 14 18 18 C 1.50700 * 110.71862 * 153.94684 * 16 15 14 19 19 H 1.07999 * 120.00297 * 2.43845 * 18 16 15 20 20 C 1.37877 * 120.00133 * 182.44188 * 18 16 15 21 21 N 1.31519 * 119.99873 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00059 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47088 * 60.00433 * 22 20 18 24 24 H 1.48507 * 109.47075 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47526 * 299.99889 * 22 20 18 26 26 C 1.47019 * 125.64904 * 175.32740 * 13 11 10 27 27 H 1.08996 * 109.47242 * 300.00202 * 1 2 3 28 28 H 1.08999 * 109.46847 * 59.99613 * 1 2 3 29 29 H 1.08996 * 109.47205 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47242 * 239.99798 * 2 1 3 31 31 H 1.09002 * 109.47017 * 65.73928 * 3 2 1 32 32 H 1.08997 * 109.47323 * 185.73876 * 3 2 1 33 33 H 1.08999 * 109.47393 * 305.73924 * 3 2 1 34 34 H 1.08993 * 109.47525 * 54.51251 * 4 2 1 35 35 H 1.09006 * 109.46909 * 294.51340 * 4 2 1 36 36 H 1.07987 * 119.92834 * 359.97438 * 6 5 4 37 37 H 1.08001 * 119.85622 * 179.71679 * 7 6 5 38 38 H 1.08005 * 119.92594 * 180.02562 * 8 7 6 39 39 H 1.08002 * 120.07271 * 179.97438 * 9 8 7 40 40 H 1.08999 * 110.36754 * 323.00268 * 14 13 11 41 41 H 1.09000 * 110.36719 * 85.21338 * 14 13 11 42 42 H 1.08999 * 111.19212 * 204.98482 * 15 14 13 43 43 H 1.08999 * 111.02275 * 80.97828 * 15 14 13 44 44 H 0.96696 * 113.99969 * 177.56305 * 17 16 15 45 45 H 0.96998 * 120.00049 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.88303 * 59.48471 * 26 13 11 47 47 H 1.09004 * 109.88330 * 298.32500 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5408 -0.8400 1.1833 6 6 4.1219 -1.9292 0.5668 7 6 5.4994 -2.0424 0.5105 8 6 6.3037 -1.0626 1.0656 9 6 5.7356 0.0341 1.6797 10 6 4.3462 0.1546 1.7400 11 6 3.7303 1.3273 2.3967 12 8 2.8933 1.1686 3.2636 13 7 4.0972 2.5725 2.0341 14 6 5.1638 2.9085 1.0735 15 6 5.6095 4.3463 1.4590 16 6 4.2557 4.9882 1.8623 17 8 3.5514 5.4502 0.7079 18 6 4.4701 6.1148 2.8399 19 1 5.4720 6.3952 3.1296 20 6 3.3871 6.7878 3.3646 21 7 2.1669 6.4468 3.0115 22 14 3.6528 8.1838 4.5770 23 1 4.4609 9.2509 3.9338 24 1 2.3383 8.7383 4.9893 25 1 4.3703 7.6719 5.7721 26 6 3.5006 3.8207 2.5317 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.7631 1.9257 0.9369 32 1 3.1252 1.4441 -0.1028 33 1 1.5953 1.9851 -0.8341 34 1 1.5987 -1.7167 1.2997 35 1 1.7590 -0.1539 2.1365 36 1 3.4999 -2.6972 0.1317 37 1 5.9493 -2.8991 0.0309 38 1 7.3786 -1.1568 1.0179 39 1 6.3644 0.7979 2.1130 40 1 5.9975 2.2136 1.1739 41 1 4.7764 2.8904 0.0548 42 1 6.0490 4.8644 0.6067 43 1 6.3001 4.3287 2.3022 44 1 2.6820 5.8263 0.9020 45 1 1.4050 6.9199 3.3809 46 1 3.6123 3.8791 3.6144 47 1 2.4448 3.8597 2.2633 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844017018.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:16:30 Heat of formation + Delta-G solvation = -70.857001 kcal Electronic energy + Delta-G solvation = -28257.043521 eV Core-core repulsion = 24597.051211 eV Total energy + Delta-G solvation = -3659.992310 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.39046 -38.48142 -37.04767 -36.03006 -34.32712 -32.20454 -31.42359 -31.35146 -29.89157 -27.80699 -26.93047 -26.55509 -25.20532 -23.62750 -22.21754 -21.71057 -19.95900 -19.60757 -18.94771 -17.22835 -16.91610 -16.14902 -15.71479 -15.39753 -15.17853 -14.75506 -14.52841 -14.15533 -13.93291 -13.87487 -13.55912 -13.05414 -12.96979 -12.89582 -12.58359 -12.42456 -12.15507 -11.92451 -11.71855 -11.70725 -11.52755 -11.33145 -11.17397 -11.03357 -10.78570 -10.75731 -10.71547 -10.52260 -10.46981 -10.42362 -10.17145 -9.38345 -9.29592 -8.87173 -8.67656 -8.63494 -8.31600 -7.86885 -6.29952 -4.38422 1.11967 1.36541 3.12998 3.21712 3.27546 3.29357 3.56919 3.86319 4.26121 4.74635 4.77295 4.88240 4.95816 4.99426 5.07936 5.11453 5.29713 5.35627 5.38627 5.51513 5.67889 5.73204 5.76960 5.80571 5.86817 5.87634 5.96529 6.03744 6.08342 6.12955 6.16560 6.20117 6.32738 6.36858 6.43789 6.46700 6.50996 6.61091 6.70637 6.75994 6.85249 6.92417 6.98080 7.25786 7.36144 7.71959 7.99340 8.19586 8.63028 8.70834 9.29513 9.39223 10.77761 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.004319 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.985280 B = 6481.724125 C = 7273.960273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.086 4.086 3 C -0.150 4.150 4 C -0.099 4.099 5 C -0.031 4.031 6 C -0.126 4.126 7 C -0.106 4.106 8 C -0.131 4.131 9 C -0.092 4.092 10 C -0.111 4.111 11 C 0.569 3.431 12 O -0.544 6.544 13 N -0.601 5.601 14 C 0.095 3.905 15 C -0.118 4.118 16 C 0.250 3.750 17 O -0.584 6.584 18 C -0.539 4.539 19 H 0.066 0.934 20 C 0.072 3.928 21 N -0.895 5.895 22 Si 0.903 3.097 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.105 3.895 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.124 0.876 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.129 0.871 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.384 0.616 45 H 0.271 0.729 46 H 0.066 0.934 47 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 -14.289 -6.872 16.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.207 4.207 4 C -0.136 4.136 5 C -0.032 4.032 6 C -0.144 4.144 7 C -0.124 4.124 8 C -0.149 4.149 9 C -0.110 4.110 10 C -0.114 4.114 11 C 0.358 3.642 12 O -0.424 6.424 13 N -0.333 5.333 14 C -0.028 4.028 15 C -0.156 4.156 16 C 0.209 3.791 17 O -0.394 6.394 18 C -0.577 4.577 19 H 0.084 0.916 20 C -0.131 4.131 21 N -0.534 5.534 22 Si 0.730 3.270 23 H -0.200 1.200 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.017 4.017 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.118 0.882 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.084 0.916 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.235 0.765 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.560 -14.571 -6.657 16.411 hybrid contribution -0.339 0.922 0.959 1.373 sum 3.222 -13.650 -5.698 15.138 Atomic orbital electron populations 1.21825 0.95092 1.01229 1.02116 1.21053 0.95592 0.96843 0.96975 1.21995 1.01100 0.95107 1.02517 1.21015 0.90236 1.01691 1.00664 1.19865 0.95919 0.92583 0.94834 1.20953 0.94910 0.97946 1.00545 1.21217 0.93664 0.98661 0.98904 1.21032 0.99869 0.94464 0.99525 1.21339 0.93546 0.98046 0.98064 1.19941 0.93861 0.96141 1.01452 1.17811 0.82126 0.81963 0.82341 1.90722 1.34161 1.85397 1.32119 1.48706 1.36147 1.05752 1.42713 1.22585 0.89760 0.97462 0.92991 1.22837 0.98528 0.92901 1.01288 1.19460 0.86421 0.89573 0.83608 1.86094 1.36188 1.82403 1.34685 1.21487 0.93564 1.16825 1.25859 0.91627 1.25054 0.94987 0.97068 0.96026 1.69629 0.98078 1.41394 1.44266 0.86471 0.77540 0.81854 0.81109 1.19991 1.21067 1.20041 1.23028 0.98098 0.81220 0.99327 0.92357 0.92677 0.93031 0.91713 0.91895 0.92635 0.92840 0.91139 0.88187 0.85815 0.86018 0.85756 0.85288 0.91578 0.91697 0.90495 0.90560 0.76546 0.91914 0.91575 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.19 37.16 0.34 -1.43 16 2 C -0.09 -1.16 2.90 -90.62 -0.26 -1.43 16 3 C -0.15 -2.43 7.45 37.16 0.28 -2.15 16 4 C -0.10 -1.42 4.59 -27.88 -0.13 -1.55 16 5 C -0.03 -0.45 4.72 -104.22 -0.49 -0.94 16 6 C -0.13 -1.47 9.70 -39.64 -0.38 -1.85 16 7 C -0.11 -1.12 10.04 -39.49 -0.40 -1.51 16 8 C -0.13 -1.45 10.03 -39.64 -0.40 -1.85 16 9 C -0.09 -1.25 8.14 -39.19 -0.32 -1.57 16 10 C -0.11 -1.79 4.42 -104.97 -0.46 -2.25 16 11 C 0.57 11.21 4.14 -12.33 -0.05 11.16 16 12 O -0.54 -12.50 15.30 5.32 0.08 -12.42 16 13 N -0.60 -11.99 2.67 -171.34 -0.46 -12.45 16 14 C 0.09 1.65 6.22 -2.27 -0.01 1.64 16 15 C -0.12 -2.28 6.26 -24.32 -0.15 -2.44 16 16 C 0.25 5.88 0.85 -89.94 -0.08 5.81 16 17 O -0.58 -14.36 13.07 -35.23 -0.46 -14.82 16 18 C -0.54 -13.87 8.11 -34.44 -0.28 -14.15 16 19 H 0.07 1.66 7.77 -52.49 -0.41 1.25 16 20 C 0.07 1.85 5.27 -17.82 -0.09 1.76 16 21 N -0.89 -23.48 10.96 55.43 0.61 -22.87 16 22 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.10 2.46 5.38 -3.07 -0.02 2.45 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 1.20 7.04 -51.93 -0.37 0.84 16 32 H 0.05 0.93 5.16 -51.93 -0.27 0.66 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.10 1.76 5.58 -51.93 -0.29 1.47 16 36 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 39 H 0.13 1.67 6.57 -52.49 -0.35 1.32 16 40 H 0.07 0.96 4.92 -51.93 -0.26 0.71 16 41 H 0.06 1.13 7.50 -51.93 -0.39 0.74 16 42 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.08 1.42 8.04 -51.93 -0.42 1.00 16 44 H 0.38 9.74 7.23 45.56 0.33 10.07 16 45 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 46 H 0.07 1.72 7.81 -51.93 -0.41 1.31 16 47 H 0.07 1.69 8.00 -51.93 -0.42 1.27 16 LS Contribution 365.33 15.07 5.51 5.51 Total: -1.00 -28.42 365.33 -9.24 -37.66 By element: Atomic # 1 Polarization: 21.01 SS G_CDS: -6.59 Total: 14.42 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -2.91 Total: -10.30 kcal Atomic # 7 Polarization: -35.47 SS G_CDS: 0.15 Total: -35.32 kcal Atomic # 8 Polarization: -26.87 SS G_CDS: -0.38 Total: -27.24 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.42 -9.24 -37.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844017018.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.195 kcal (2) G-P(sol) polarization free energy of solvation -28.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.857 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds